Wall clock time and date at job start Mon Mar 30 2020 01:35:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46902 * 111.00460 * 2 1 4 4 C 1.50700 * 109.47041 * 66.04370 * 3 2 1 5 5 H 1.08003 * 119.99920 * 0.02562 * 4 3 2 6 6 C 1.37874 * 120.00123 * 180.02562 * 4 3 2 7 7 N 1.31514 * 120.00097 * 359.97438 * 6 4 3 8 8 Si 1.86802 * 120.00173 * 180.02562 * 6 4 3 9 9 H 1.48506 * 109.46939 * 0.02562 * 8 6 4 10 10 H 1.48499 * 109.47040 * 119.99813 * 8 6 4 11 11 H 1.48500 * 109.47369 * 240.00105 * 8 6 4 12 12 C 1.46898 * 111.00107 * 236.04337 * 2 1 3 13 13 C 1.50694 * 109.47348 * 293.95730 * 12 2 1 14 14 C 1.38291 * 119.92697 * 269.72525 * 13 12 2 15 15 C 1.38103 * 120.07344 * 179.72421 * 14 13 12 16 16 C 1.38908 * 119.92599 * 0.54727 * 15 14 13 17 17 N 1.39678 * 120.07333 * 179.70552 * 16 15 14 18 18 C 1.48536 * 110.99987 * 116.84253 * 17 16 15 19 19 C 1.54937 * 103.22536 * 159.71952 * 18 17 16 20 20 C 1.54586 * 102.92273 * 322.58242 * 19 18 17 21 21 C 1.47907 * 110.99892 * 234.23325 * 17 16 15 22 22 C 1.38916 * 119.85365 * 359.72712 * 16 15 14 23 23 C 1.38105 * 119.91804 * 359.97438 * 22 16 15 24 24 H 1.08998 * 109.47495 * 183.95580 * 1 2 3 25 25 H 1.09004 * 109.46980 * 303.95567 * 1 2 3 26 26 H 1.08999 * 109.46781 * 63.95031 * 1 2 3 27 27 H 1.09001 * 109.47598 * 186.04624 * 3 2 1 28 28 H 1.08996 * 109.47126 * 306.04834 * 3 2 1 29 29 H 0.96997 * 120.00453 * 179.97438 * 7 6 4 30 30 H 1.09003 * 109.47114 * 53.95907 * 12 2 1 31 31 H 1.09003 * 109.47398 * 173.95697 * 12 2 1 32 32 H 1.07998 * 119.95645 * 359.97438 * 14 13 12 33 33 H 1.08004 * 120.03362 * 180.27101 * 15 14 13 34 34 H 1.08999 * 110.66238 * 278.15394 * 18 17 16 35 35 H 1.08996 * 110.66713 * 41.27964 * 18 17 16 36 36 H 1.08997 * 110.71831 * 204.22187 * 19 18 17 37 37 H 1.08998 * 110.72317 * 80.94337 * 19 18 17 38 38 H 1.08997 * 110.31041 * 263.04416 * 20 19 18 39 39 H 1.09001 * 110.31120 * 140.87373 * 20 19 18 40 40 H 1.09003 * 109.91424 * 333.51281 * 21 17 16 41 41 H 1.08998 * 109.90998 * 94.60288 * 21 17 16 42 42 H 1.07996 * 120.03992 * 180.02562 * 22 16 15 43 43 H 1.07999 * 119.95899 * 180.02562 * 23 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0471 1.2984 5 1 1.0746 1.5112 2.0488 6 6 2.0269 3.3494 1.5285 7 7 2.7122 4.0018 0.6150 8 14 1.5831 4.1868 3.1383 9 1 0.8168 3.2437 3.9919 10 1 2.8251 4.5943 3.8431 11 1 0.7552 5.3877 2.8598 12 6 1.9954 -0.7660 -1.1375 13 6 1.6369 -2.2204 -0.9728 14 6 2.4979 -3.0719 -0.3050 15 6 2.1697 -4.4041 -0.1473 16 6 0.9785 -4.8909 -0.6704 17 7 0.6464 -6.2390 -0.5181 18 6 -0.5887 -6.3947 0.2922 19 6 -1.0806 -7.8158 -0.0809 20 6 -0.7518 -7.9107 -1.5884 21 6 0.3518 -6.8634 -1.8261 22 6 0.1185 -4.0341 -1.3457 23 6 0.4500 -2.7017 -1.4943 24 1 -0.3634 -1.0252 0.0709 25 1 -0.3633 0.5740 0.8525 26 1 -0.3633 0.4513 -0.9233 27 1 3.0798 1.3444 -0.1082 28 1 1.5612 1.9273 -0.8309 29 1 2.9862 4.9181 0.7767 30 1 1.5612 -0.3873 -2.0628 31 1 3.0798 -0.6612 -1.1756 32 1 3.4261 -2.6937 0.0973 33 1 2.8406 -5.0675 0.3782 34 1 -0.3608 -6.3335 1.3564 35 1 -1.3292 -5.6454 0.0126 36 1 -2.1537 -7.9087 0.0865 37 1 -0.5345 -8.5730 0.4815 38 1 -1.6334 -7.6730 -2.1836 39 1 -0.3862 -8.9078 -1.8338 40 1 0.0009 -6.1068 -2.5280 41 1 1.2475 -7.3456 -2.2174 42 1 -0.8086 -4.4093 -1.7532 43 1 -0.2183 -2.0349 -2.0189 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001204319841.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:56 Heat of formation + Delta-G solvation = 36.807778 kcal Electronic energy + Delta-G solvation = -20679.771662 eV Core-core repulsion = 17724.612660 eV Total energy + Delta-G solvation = -2955.159001 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.25837 -38.22551 -36.14400 -33.03574 -32.21416 -30.80873 -29.40095 -29.10561 -27.05735 -26.08876 -23.84543 -22.68274 -21.91612 -21.15081 -20.56295 -19.93674 -17.29000 -16.39946 -16.28041 -15.23686 -15.10954 -14.80810 -14.37238 -14.20493 -14.15196 -13.74662 -13.37617 -13.23290 -13.11029 -12.61064 -12.23783 -11.95009 -11.89459 -11.63612 -11.47384 -11.39619 -11.18607 -11.12371 -10.91175 -10.85801 -10.73085 -10.60225 -10.41023 -9.85371 -9.20821 -8.73566 -8.70897 -8.45400 -8.27538 -7.23439 -6.02770 -4.03893 1.42580 1.59301 3.31182 3.38545 3.43822 3.77679 3.85160 4.41076 4.43907 4.54930 4.69457 4.98250 5.05456 5.11278 5.14544 5.24092 5.28144 5.34768 5.40497 5.50181 5.55050 5.63372 5.65069 5.72910 5.77438 5.85829 5.91595 5.95929 6.11808 6.23630 6.26740 6.36415 6.50412 6.55629 6.60454 6.76039 6.93705 6.97470 7.28097 7.33345 7.43909 7.80280 8.07666 8.19687 8.54280 9.04172 9.60336 11.08196 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.036841 B = 0.003179 C = 0.003090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.839130 B = 8804.667823 C = 9059.781117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.534 5.534 3 C 0.192 3.808 4 C -0.505 4.505 5 H 0.064 0.936 6 C 0.054 3.946 7 N -0.899 5.899 8 Si 0.898 3.102 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.285 1.285 12 C 0.088 3.912 13 C -0.060 4.060 14 C -0.094 4.094 15 C -0.095 4.095 16 C 0.065 3.935 17 N -0.482 5.482 18 C 0.038 3.962 19 C -0.124 4.124 20 C -0.131 4.131 21 C 0.036 3.964 22 C -0.152 4.152 23 C -0.105 4.105 24 H 0.048 0.952 25 H 0.073 0.927 26 H 0.009 0.991 27 H 0.031 0.969 28 H -0.009 1.009 29 H 0.261 0.739 30 H 0.031 0.969 31 H 0.077 0.923 32 H 0.127 0.873 33 H 0.125 0.875 34 H 0.084 0.916 35 H 0.050 0.950 36 H 0.072 0.928 37 H 0.075 0.925 38 H 0.066 0.934 39 H 0.072 0.928 40 H 0.051 0.949 41 H 0.079 0.921 42 H 0.113 0.887 43 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.054 -21.783 -5.217 23.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.258 5.258 3 C 0.067 3.933 4 C -0.544 4.544 5 H 0.082 0.918 6 C -0.147 4.147 7 N -0.539 5.539 8 Si 0.726 3.274 9 H -0.196 1.196 10 H -0.210 1.210 11 H -0.211 1.211 12 C -0.040 4.040 13 C -0.060 4.060 14 C -0.113 4.113 15 C -0.114 4.114 16 C -0.029 4.029 17 N -0.203 5.203 18 C -0.088 4.088 19 C -0.162 4.162 20 C -0.170 4.170 21 C -0.091 4.091 22 C -0.172 4.172 23 C -0.125 4.125 24 H 0.066 0.934 25 H 0.092 0.908 26 H 0.028 0.972 27 H 0.049 0.951 28 H 0.009 0.991 29 H 0.070 0.930 30 H 0.049 0.951 31 H 0.096 0.904 32 H 0.145 0.855 33 H 0.143 0.857 34 H 0.102 0.898 35 H 0.068 0.932 36 H 0.090 0.910 37 H 0.094 0.906 38 H 0.085 0.915 39 H 0.091 0.909 40 H 0.069 0.931 41 H 0.098 0.902 42 H 0.131 0.869 43 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -5.361 -22.079 -4.567 23.175 hybrid contribution -1.161 1.467 -0.365 1.907 sum -6.523 -20.611 -4.932 22.174 Atomic orbital electron populations 1.22272 0.88954 0.99727 1.00346 1.62142 1.07039 1.17582 1.39026 1.19769 0.95429 0.81400 0.96723 1.21199 1.34682 0.96855 1.01654 0.91787 1.24993 0.95320 0.97353 0.97013 1.69966 1.38498 1.11395 1.34059 0.86444 0.78168 0.79287 0.83549 1.19639 1.20983 1.21135 1.21072 1.00507 0.89227 0.93223 1.20018 0.93981 0.95875 0.96167 1.21036 0.99982 0.92542 0.97725 1.20930 0.95683 0.95209 0.99563 1.18866 0.95464 0.88607 0.99951 1.62401 1.33037 1.11928 1.12927 1.23339 0.90053 0.96428 0.98992 1.22493 1.00874 0.96989 0.95824 1.22409 0.98249 0.99531 0.96773 1.22991 0.98671 0.96688 0.90701 1.21436 0.99620 0.94413 1.01728 1.20919 0.96586 0.94774 1.00183 0.93371 0.90791 0.97243 0.95142 0.99108 0.92982 0.95099 0.90426 0.85484 0.85735 0.89751 0.93166 0.90965 0.90633 0.91499 0.90931 0.93066 0.90245 0.86894 0.86503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.72 8.95 60.06 0.54 1.25 16 2 N -0.53 -11.73 4.74 -245.83 -1.17 -12.90 16 3 C 0.19 5.04 4.72 -4.97 -0.02 5.01 16 4 C -0.51 -14.32 8.46 -34.44 -0.29 -14.61 16 5 H 0.06 1.81 7.12 -52.48 -0.37 1.43 16 6 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 7 N -0.90 -26.85 13.29 55.43 0.74 -26.11 16 8 Si 0.90 21.77 29.54 -169.99 -5.02 16.75 16 9 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 10 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 12 C 0.09 1.61 5.12 -4.98 -0.03 1.58 16 13 C -0.06 -0.96 4.89 -104.59 -0.51 -1.47 16 14 C -0.09 -1.41 9.69 -39.61 -0.38 -1.79 16 15 C -0.10 -1.31 9.97 -39.38 -0.39 -1.70 16 16 C 0.07 0.86 4.86 -83.78 -0.41 0.45 16 17 N -0.48 -5.54 5.28 -167.16 -0.88 -6.43 16 18 C 0.04 0.38 6.43 -1.90 -0.01 0.37 16 19 C -0.12 -0.95 7.06 -24.88 -0.18 -1.13 16 20 C -0.13 -0.98 6.93 -25.38 -0.18 -1.16 16 21 C 0.04 0.35 6.49 -2.75 -0.02 0.33 16 22 C -0.15 -1.99 7.90 -39.38 -0.31 -2.30 16 23 C -0.11 -1.53 7.95 -39.61 -0.31 -1.84 16 24 H 0.05 0.86 6.16 -51.93 -0.32 0.54 16 25 H 0.07 1.59 6.76 -51.93 -0.35 1.24 16 26 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 27 H 0.03 0.85 7.93 -51.93 -0.41 0.43 16 28 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 29 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 30 H 0.03 0.55 8.06 -51.93 -0.42 0.14 16 31 H 0.08 1.40 7.87 -51.93 -0.41 0.99 16 32 H 0.13 1.83 8.06 -52.49 -0.42 1.41 16 33 H 0.12 1.55 8.06 -52.48 -0.42 1.12 16 34 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.05 0.52 7.03 -51.93 -0.36 0.16 16 36 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.05 0.51 6.30 -51.93 -0.33 0.18 16 41 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.11 1.30 7.04 -52.49 -0.37 0.93 16 43 H 0.12 1.60 8.03 -52.49 -0.42 1.18 16 LS Contribution 340.88 15.07 5.14 5.14 Total: -1.00 -30.25 340.88 -10.93 -41.18 By element: Atomic # 1 Polarization: 5.04 SS G_CDS: -7.13 Total: -2.09 kcal Atomic # 6 Polarization: -12.94 SS G_CDS: -2.60 Total: -15.54 kcal Atomic # 7 Polarization: -44.12 SS G_CDS: -1.31 Total: -45.43 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -30.25 -10.93 -41.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204319841.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.988 kcal (2) G-P(sol) polarization free energy of solvation -30.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.180 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds