Wall clock time and date at job start Mon Mar 30 2020 01:35:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46902 * 111.00460 * 2 1 4 4 C 1.50700 * 109.47041 * 66.04370 * 3 2 1 5 5 H 1.08003 * 119.99920 * 0.02562 * 4 3 2 6 6 C 1.37874 * 120.00123 * 180.02562 * 4 3 2 7 7 N 1.31514 * 120.00097 * 359.97438 * 6 4 3 8 8 Si 1.86802 * 120.00173 * 180.02562 * 6 4 3 9 9 H 1.48506 * 109.46939 * 0.02562 * 8 6 4 10 10 H 1.48499 * 109.47040 * 119.99813 * 8 6 4 11 11 H 1.48500 * 109.47369 * 240.00105 * 8 6 4 12 12 C 1.46898 * 111.00107 * 236.04337 * 2 1 3 13 13 C 1.50694 * 109.47348 * 293.95730 * 12 2 1 14 14 C 1.38291 * 119.92697 * 269.72525 * 13 12 2 15 15 C 1.38103 * 120.07344 * 179.72421 * 14 13 12 16 16 C 1.38908 * 119.92599 * 0.54727 * 15 14 13 17 17 N 1.39678 * 120.07333 * 179.70552 * 16 15 14 18 18 C 1.48536 * 110.99987 * 116.84253 * 17 16 15 19 19 C 1.54937 * 103.22536 * 159.71952 * 18 17 16 20 20 C 1.54586 * 102.92273 * 322.58242 * 19 18 17 21 21 C 1.47907 * 110.99892 * 234.23325 * 17 16 15 22 22 C 1.38916 * 119.85365 * 359.72712 * 16 15 14 23 23 C 1.38105 * 119.91804 * 359.97438 * 22 16 15 24 24 H 1.08998 * 109.47495 * 183.95580 * 1 2 3 25 25 H 1.09004 * 109.46980 * 303.95567 * 1 2 3 26 26 H 1.08999 * 109.46781 * 63.95031 * 1 2 3 27 27 H 1.09001 * 109.47598 * 186.04624 * 3 2 1 28 28 H 1.08996 * 109.47126 * 306.04834 * 3 2 1 29 29 H 0.96997 * 120.00453 * 179.97438 * 7 6 4 30 30 H 1.09003 * 109.47114 * 53.95907 * 12 2 1 31 31 H 1.09003 * 109.47398 * 173.95697 * 12 2 1 32 32 H 1.07998 * 119.95645 * 359.97438 * 14 13 12 33 33 H 1.08004 * 120.03362 * 180.27101 * 15 14 13 34 34 H 1.08999 * 110.66238 * 278.15394 * 18 17 16 35 35 H 1.08996 * 110.66713 * 41.27964 * 18 17 16 36 36 H 1.08997 * 110.71831 * 204.22187 * 19 18 17 37 37 H 1.08998 * 110.72317 * 80.94337 * 19 18 17 38 38 H 1.08997 * 110.31041 * 263.04416 * 20 19 18 39 39 H 1.09001 * 110.31120 * 140.87373 * 20 19 18 40 40 H 1.09003 * 109.91424 * 333.51281 * 21 17 16 41 41 H 1.08998 * 109.90998 * 94.60288 * 21 17 16 42 42 H 1.07996 * 120.03992 * 180.02562 * 22 16 15 43 43 H 1.07999 * 119.95899 * 180.02562 * 23 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0471 1.2984 5 1 1.0746 1.5112 2.0488 6 6 2.0269 3.3494 1.5285 7 7 2.7122 4.0018 0.6150 8 14 1.5831 4.1868 3.1383 9 1 0.8168 3.2437 3.9919 10 1 2.8251 4.5943 3.8431 11 1 0.7552 5.3877 2.8598 12 6 1.9954 -0.7660 -1.1375 13 6 1.6369 -2.2204 -0.9728 14 6 2.4979 -3.0719 -0.3050 15 6 2.1697 -4.4041 -0.1473 16 6 0.9785 -4.8909 -0.6704 17 7 0.6464 -6.2390 -0.5181 18 6 -0.5887 -6.3947 0.2922 19 6 -1.0806 -7.8158 -0.0809 20 6 -0.7518 -7.9107 -1.5884 21 6 0.3518 -6.8634 -1.8261 22 6 0.1185 -4.0341 -1.3457 23 6 0.4500 -2.7017 -1.4943 24 1 -0.3634 -1.0252 0.0709 25 1 -0.3633 0.5740 0.8525 26 1 -0.3633 0.4513 -0.9233 27 1 3.0798 1.3444 -0.1082 28 1 1.5612 1.9273 -0.8309 29 1 2.9862 4.9181 0.7767 30 1 1.5612 -0.3873 -2.0628 31 1 3.0798 -0.6612 -1.1756 32 1 3.4261 -2.6937 0.0973 33 1 2.8406 -5.0675 0.3782 34 1 -0.3608 -6.3335 1.3564 35 1 -1.3292 -5.6454 0.0126 36 1 -2.1537 -7.9087 0.0865 37 1 -0.5345 -8.5730 0.4815 38 1 -1.6334 -7.6730 -2.1836 39 1 -0.3862 -8.9078 -1.8338 40 1 0.0009 -6.1068 -2.5280 41 1 1.2475 -7.3456 -2.2174 42 1 -0.8086 -4.4093 -1.7532 43 1 -0.2183 -2.0349 -2.0189 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001204319841.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:56 Heat of formation + Delta-G solvation = 18.862680 kcal Electronic energy + Delta-G solvation = -20680.549820 eV Core-core repulsion = 17724.612660 eV Total energy + Delta-G solvation = -2955.937159 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.23501 -39.35892 -37.67079 -34.81637 -33.55145 -31.91988 -30.67069 -29.81132 -28.99050 -27.55719 -25.45049 -23.88877 -23.06258 -22.12901 -21.77174 -21.13885 -18.57334 -18.17515 -17.15518 -16.86489 -16.34558 -16.24015 -15.98544 -15.42400 -15.24971 -15.02963 -14.69024 -14.34513 -14.11599 -13.90815 -13.59586 -13.41467 -13.14309 -12.97613 -12.76995 -12.60579 -12.59797 -12.45375 -12.24568 -12.16923 -12.06521 -11.99383 -11.77752 -11.43973 -11.26877 -10.63608 -9.83774 -9.61918 -9.41703 -9.01443 -8.21475 -6.31653 0.29557 0.48248 1.40355 1.41254 1.54957 2.39544 2.70199 2.93714 3.11015 3.50235 3.71549 3.89069 3.90934 3.94938 4.04904 4.09569 4.32275 4.34211 4.46662 4.52387 4.57744 4.60485 4.69374 4.71616 4.78592 4.88563 4.90519 4.97180 5.04207 5.05250 5.13073 5.15609 5.17752 5.25100 5.29301 5.38244 5.51762 5.63540 5.74917 5.81223 5.88314 6.03030 6.30038 6.44883 6.59028 6.84382 7.38052 8.89770 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.036841 B = 0.003179 C = 0.003090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.839130 B = 8804.667823 C = 9059.781117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 N -0.542 5.542 3 C 0.206 3.794 4 C -0.523 4.523 5 H 0.062 0.938 6 C 0.001 3.999 7 N -0.935 5.935 8 Si 0.970 3.030 9 H -0.264 1.264 10 H -0.278 1.278 11 H -0.277 1.277 12 C 0.092 3.908 13 C -0.079 4.079 14 C -0.101 4.101 15 C -0.101 4.101 16 C 0.072 3.928 17 N -0.493 5.493 18 C 0.033 3.967 19 C -0.118 4.118 20 C -0.126 4.126 21 C 0.032 3.968 22 C -0.148 4.148 23 C -0.107 4.107 24 H 0.073 0.927 25 H 0.056 0.944 26 H 0.013 0.987 27 H 0.006 0.994 28 H -0.036 1.036 29 H 0.265 0.735 30 H 0.033 0.967 31 H 0.071 0.929 32 H 0.125 0.875 33 H 0.136 0.864 34 H 0.079 0.921 35 H 0.047 0.953 36 H 0.088 0.912 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.084 0.916 40 H 0.048 0.952 41 H 0.079 0.921 42 H 0.133 0.867 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.512 -23.650 -4.680 25.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 N -0.266 5.266 3 C 0.080 3.920 4 C -0.561 4.561 5 H 0.080 0.920 6 C -0.197 4.197 7 N -0.575 5.575 8 Si 0.794 3.206 9 H -0.188 1.188 10 H -0.203 1.203 11 H -0.203 1.203 12 C -0.036 4.036 13 C -0.079 4.079 14 C -0.120 4.120 15 C -0.119 4.119 16 C -0.022 4.022 17 N -0.215 5.215 18 C -0.093 4.093 19 C -0.155 4.155 20 C -0.164 4.164 21 C -0.094 4.094 22 C -0.168 4.168 23 C -0.126 4.126 24 H 0.091 0.909 25 H 0.074 0.926 26 H 0.031 0.969 27 H 0.024 0.976 28 H -0.018 1.018 29 H 0.074 0.926 30 H 0.051 0.949 31 H 0.090 0.910 32 H 0.143 0.857 33 H 0.154 0.846 34 H 0.097 0.903 35 H 0.066 0.934 36 H 0.107 0.893 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.103 0.897 40 H 0.066 0.934 41 H 0.098 0.902 42 H 0.151 0.849 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -6.828 -23.975 -4.039 25.254 hybrid contribution -0.700 1.930 -0.583 2.134 sum -7.528 -22.045 -4.622 23.749 Atomic orbital electron populations 1.22214 0.87705 1.00958 0.99691 1.62048 1.08233 1.15125 1.41232 1.19423 0.93820 0.83564 0.95161 1.21480 1.34841 0.97482 1.02284 0.92014 1.25914 0.94990 0.98021 1.00734 1.70086 1.39372 1.11900 1.36166 0.85324 0.78113 0.78178 0.78945 1.18810 1.20318 1.20308 1.21033 1.00045 0.90517 0.91962 1.19806 0.95403 0.94326 0.98375 1.21085 0.99941 0.93160 0.97796 1.21072 0.96340 0.94775 0.99743 1.19057 0.94934 0.89595 0.98639 1.62442 1.34150 1.10685 1.14190 1.23412 0.89363 0.97991 0.98513 1.22489 1.01851 0.95316 0.95893 1.22411 0.97872 0.99429 0.96725 1.23075 0.99586 0.97117 0.89646 1.21607 1.00257 0.93700 1.01224 1.21004 0.96026 0.95617 0.99982 0.90875 0.92554 0.96895 0.97575 1.01813 0.92633 0.94881 0.91035 0.85668 0.84597 0.90265 0.93433 0.89345 0.90387 0.90399 0.89703 0.93351 0.90226 0.84929 0.85805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.71 8.95 127.69 1.14 2.85 16 2 N -0.54 -24.32 4.74 -931.66 -4.42 -28.74 16 3 C 0.21 11.26 4.72 85.56 0.40 11.66 16 4 C -0.52 -30.18 8.46 25.60 0.22 -29.97 16 5 H 0.06 3.52 7.12 -2.91 -0.02 3.50 16 6 C 0.00 0.08 5.46 84.65 0.46 0.54 16 7 N -0.93 -56.78 13.29 21.45 0.28 -56.50 16 8 Si 0.97 44.78 29.54 68.60 2.03 46.80 16 9 H -0.26 -11.75 7.11 99.48 0.71 -11.05 16 10 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 11 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 12 C 0.09 3.44 5.12 85.56 0.44 3.88 16 13 C -0.08 -2.49 4.89 -19.84 -0.10 -2.59 16 14 C -0.10 -3.00 9.69 22.25 0.22 -2.78 16 15 C -0.10 -2.66 9.97 22.40 0.22 -2.44 16 16 C 0.07 1.78 4.86 38.21 0.19 1.96 16 17 N -0.49 -10.33 5.28 -682.76 -3.60 -13.93 16 18 C 0.03 0.59 6.43 86.65 0.56 1.15 16 19 C -0.12 -1.46 7.06 31.80 0.22 -1.23 16 20 C -0.13 -1.50 6.93 31.47 0.22 -1.28 16 21 C 0.03 0.54 6.49 86.44 0.56 1.10 16 22 C -0.15 -3.58 7.90 22.40 0.18 -3.41 16 23 C -0.11 -2.96 7.95 22.25 0.18 -2.78 16 24 H 0.07 2.55 6.16 -2.39 -0.01 2.53 16 25 H 0.06 2.44 6.76 -2.39 -0.02 2.42 16 26 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 27 H 0.01 0.36 7.93 -2.39 -0.02 0.34 16 28 H -0.04 -2.10 8.12 -2.39 -0.02 -2.12 16 29 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 30 H 0.03 1.21 8.06 -2.39 -0.02 1.19 16 31 H 0.07 2.70 7.87 -2.39 -0.02 2.68 16 32 H 0.13 3.67 8.06 -2.91 -0.02 3.64 16 33 H 0.14 3.22 8.06 -2.91 -0.02 3.20 16 34 H 0.08 1.47 8.14 -2.39 -0.02 1.46 16 35 H 0.05 0.87 7.03 -2.39 -0.02 0.85 16 36 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.05 0.84 6.30 -2.39 -0.02 0.83 16 41 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 42 H 0.13 2.67 7.04 -2.91 -0.02 2.65 16 43 H 0.12 3.21 8.03 -2.91 -0.02 3.18 16 Total: -1.00 -64.86 340.88 0.36 -64.50 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: 0.96 Total: 11.20 kcal Atomic # 6 Polarization: -28.44 SS G_CDS: 5.11 Total: -23.34 kcal Atomic # 7 Polarization: -91.43 SS G_CDS: -7.74 Total: -99.17 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.80 kcal Total: -64.86 0.36 -64.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204319841.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.361 kcal (2) G-P(sol) polarization free energy of solvation -64.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.499 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds