Wall clock time and date at job start Mon Mar 30 2020 01:20:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46853 * 110.99950 * 2 1 4 4 C 1.53036 * 109.52131 * 174.15766 * 3 2 1 5 5 C 1.53121 * 109.27680 * 59.18437 * 4 3 2 6 6 C 1.53123 * 109.16179 * 302.33756 * 5 4 3 7 7 H 1.08996 * 109.53858 * 297.70087 * 6 5 4 8 8 N 1.46896 * 109.50447 * 177.59714 * 6 5 4 9 9 C 1.46903 * 110.99947 * 155.20243 * 8 6 5 10 10 C 1.50693 * 109.46892 * 179.97438 * 9 8 6 11 11 C 1.38629 * 119.75270 * 269.72163 * 10 9 8 12 12 C 1.37622 * 120.25073 * 179.72445 * 11 10 9 13 13 C 1.40711 * 119.74255 * 0.57160 * 12 11 10 14 14 C 1.41400 * 120.24519 * 179.67986 * 13 12 11 15 15 H 1.07993 * 120.00417 * 204.40825 * 14 13 12 16 16 C 1.39949 * 119.99722 * 24.41101 * 14 13 12 17 17 N 1.30829 * 120.00062 * 17.84366 * 16 14 13 18 18 Si 1.86798 * 120.00043 * 197.84420 * 16 14 13 19 19 H 1.48505 * 109.46835 * 60.00206 * 18 16 14 20 20 H 1.48500 * 109.47096 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47401 * 300.00354 * 18 16 14 22 22 C 1.40712 * 119.51307 * 359.70710 * 13 12 11 23 23 C 1.37613 * 119.74639 * 359.97438 * 22 13 12 24 24 C 1.46850 * 111.00283 * 235.79054 * 2 1 3 25 25 H 1.09002 * 109.47040 * 184.20855 * 1 2 3 26 26 H 1.08994 * 109.47140 * 304.20791 * 1 2 3 27 27 H 1.09002 * 109.46987 * 64.21070 * 1 2 3 28 28 H 1.08997 * 109.46258 * 294.17597 * 3 2 1 29 29 H 1.09003 * 109.45693 * 54.14617 * 3 2 1 30 30 H 1.09003 * 109.50341 * 179.11516 * 4 3 2 31 31 H 1.08999 * 109.50723 * 299.20214 * 4 3 2 32 32 H 1.09007 * 109.52051 * 182.43740 * 5 4 3 33 33 H 1.09001 * 109.52522 * 62.24728 * 5 4 3 34 34 H 1.00898 * 111.00320 * 31.24612 * 8 6 5 35 35 H 1.09001 * 109.46874 * 59.99932 * 9 8 6 36 36 H 1.09000 * 109.46583 * 299.99488 * 9 8 6 37 37 H 1.08007 * 119.87515 * 359.97438 * 11 10 9 38 38 H 1.08002 * 120.12595 * 180.28405 * 12 11 10 39 39 H 0.96994 * 119.99970 * 179.97438 * 17 16 14 40 40 H 1.08007 * 120.12669 * 180.02562 * 22 13 12 41 41 H 1.08000 * 119.87953 * 180.02562 * 23 22 13 42 42 H 1.08997 * 109.45955 * 65.82232 * 24 2 1 43 43 H 1.09003 * 109.46207 * 305.85542 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3710 0.0000 4 6 3.5181 1.3342 0.1468 5 6 4.1188 0.5371 -1.0144 6 6 3.5182 -0.8715 -1.0208 7 1 3.7814 -1.3842 -0.0957 8 7 4.0462 -1.6245 -2.1663 9 6 3.9953 -3.0708 -1.9140 10 6 4.5432 -3.8086 -3.1084 11 6 3.6890 -4.1950 -4.1295 12 6 4.1793 -4.8643 -5.2276 13 6 5.5514 -5.1665 -5.3056 14 6 6.0654 -5.8597 -6.4258 15 1 6.9785 -6.4293 -6.3360 16 6 5.3908 -5.8074 -7.6509 17 7 4.5066 -4.8687 -7.8713 18 14 5.7530 -7.0781 -8.9714 19 1 5.4462 -8.4345 -8.4505 20 1 4.9134 -6.8042 -10.1653 21 1 7.1875 -7.0053 -9.3483 22 6 6.4081 -4.7745 -4.2605 23 6 5.8969 -4.1004 -3.1751 24 6 1.9953 -0.7708 -1.1337 25 1 -0.3633 -1.0249 0.0754 26 1 -0.3633 0.5777 0.8498 27 1 -0.3633 0.4471 -0.9253 28 1 1.7325 1.8609 -0.9375 29 1 1.5634 1.9257 0.8330 30 1 3.9099 2.3513 0.1310 31 1 3.7813 0.8574 1.0910 32 1 5.1998 0.4715 -0.8904 33 1 3.8887 1.0355 -1.9560 34 1 4.9845 -1.3296 -2.3915 35 1 2.9622 -3.3736 -1.7429 36 1 4.5938 -3.3075 -1.0344 37 1 2.6354 -3.9665 -4.0650 38 1 3.5128 -5.1604 -6.0241 39 1 4.0394 -4.8323 -8.7205 40 1 7.4630 -5.0010 -4.3103 41 1 6.5526 -3.7981 -2.3719 42 1 1.7325 -0.2708 -2.0660 43 1 1.5635 -1.7716 -1.1242 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206441665.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:45 Heat of formation + Delta-G solvation = 10.462724 kcal Electronic energy + Delta-G solvation = -20618.815348 eV Core-core repulsion = 17662.513939 eV Total energy + Delta-G solvation = -2956.301409 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.22633 -37.64621 -35.49925 -33.74760 -32.77437 -30.62568 -29.27282 -28.61192 -26.90394 -25.91055 -23.46876 -22.71615 -21.73388 -20.91482 -19.93668 -19.55175 -17.26582 -16.10121 -15.48821 -15.30708 -15.03857 -14.70966 -14.59468 -14.04864 -13.76548 -13.73840 -13.15418 -13.00689 -12.67831 -12.46186 -12.29946 -12.05639 -11.88472 -11.69797 -11.54119 -11.33746 -11.06028 -10.98001 -10.89852 -10.64717 -10.41994 -10.33196 -10.27216 -9.55187 -9.33633 -9.09528 -8.42009 -8.01098 -7.40815 -7.27319 -6.73266 -4.32380 2.78011 3.07390 3.10002 3.11282 3.20908 3.79442 3.94606 4.48212 4.72024 4.73705 4.85635 4.98845 5.17111 5.27571 5.34702 5.43213 5.53363 5.63643 5.69749 5.73029 5.76288 5.83520 5.85940 5.91586 5.95213 5.98761 6.15605 6.27784 6.33414 6.41025 6.48491 6.96065 6.97859 6.99131 7.09796 7.33198 7.39493 7.50925 7.64692 7.77638 7.93551 8.08569 8.18844 8.33423 8.67728 8.92419 9.01277 10.20984 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.034613 B = 0.003197 C = 0.003084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.753470 B = 8754.763027 C = 9077.825465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.547 5.547 3 C 0.055 3.945 4 C -0.114 4.114 5 C -0.124 4.124 6 C 0.090 3.910 7 H 0.047 0.953 8 N -0.682 5.682 9 C 0.126 3.874 10 C -0.213 4.213 11 C -0.079 4.079 12 C -0.168 4.168 13 C 0.112 3.888 14 C -0.465 4.465 15 H 0.076 0.924 16 C 0.076 3.924 17 N -0.792 5.792 18 Si 0.907 3.093 19 H -0.264 1.264 20 H -0.279 1.279 21 H -0.266 1.266 22 C -0.228 4.228 23 C -0.085 4.085 24 C 0.068 3.932 25 H 0.068 0.932 26 H 0.065 0.935 27 H 0.024 0.976 28 H 0.033 0.967 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.063 0.937 33 H 0.068 0.932 34 H 0.343 0.657 35 H 0.061 0.939 36 H 0.018 0.982 37 H 0.086 0.914 38 H 0.117 0.883 39 H 0.281 0.719 40 H 0.090 0.910 41 H 0.082 0.918 42 H 0.041 0.959 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.917 9.441 11.469 15.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.272 5.272 3 C -0.073 4.073 4 C -0.152 4.152 5 C -0.162 4.162 6 C -0.020 4.020 7 H 0.065 0.935 8 N -0.314 5.314 9 C -0.001 4.001 10 C -0.214 4.214 11 C -0.098 4.098 12 C -0.187 4.187 13 C 0.110 3.890 14 C -0.494 4.494 15 H 0.094 0.906 16 C -0.142 4.142 17 N -0.417 5.417 18 Si 0.732 3.268 19 H -0.188 1.188 20 H -0.204 1.204 21 H -0.191 1.191 22 C -0.247 4.247 23 C -0.104 4.104 24 C -0.060 4.060 25 H 0.087 0.913 26 H 0.084 0.916 27 H 0.043 0.957 28 H 0.051 0.949 29 H 0.089 0.911 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.081 0.919 33 H 0.087 0.913 34 H 0.162 0.838 35 H 0.079 0.921 36 H 0.037 0.963 37 H 0.104 0.896 38 H 0.134 0.866 39 H 0.091 0.909 40 H 0.108 0.892 41 H 0.101 0.899 42 H 0.059 0.941 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -5.518 9.319 11.365 15.699 hybrid contribution 0.564 -0.185 -0.870 1.053 sum -4.954 9.134 10.495 14.769 Atomic orbital electron populations 1.22321 0.87327 1.02273 1.00209 1.61872 1.07497 1.13541 1.44260 1.22092 0.95649 0.89361 1.00214 1.21542 0.94459 0.99997 0.99193 1.21780 0.99765 0.95666 0.98973 1.21445 0.94097 0.93539 0.92958 0.93540 1.60528 1.28696 1.04743 1.37419 1.20592 0.99130 0.85777 0.94628 1.18915 0.93878 1.10251 0.98404 1.20492 0.97001 0.98318 0.93982 1.21309 0.95702 1.04042 0.97645 1.17611 0.91362 0.88693 0.91340 1.19563 1.08687 1.27364 0.93797 0.90576 1.25907 0.93712 0.94857 0.99689 1.69830 1.20353 1.27032 1.24461 0.86390 0.79381 0.81715 0.79352 1.18849 1.20360 1.19055 1.20925 0.97698 1.08179 0.97925 1.20354 0.93878 0.99259 0.96921 1.22049 0.95076 0.98053 0.90864 0.91326 0.91613 0.95713 0.94924 0.91059 0.91465 0.91225 0.91859 0.91313 0.83828 0.92105 0.96342 0.89572 0.86557 0.90858 0.89208 0.89949 0.94098 0.90849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 9.59 60.06 0.58 0.84 16 2 N -0.55 -6.40 4.91 -242.95 -1.19 -7.59 16 3 C 0.05 0.56 5.46 -3.83 -0.02 0.54 16 4 C -0.11 -1.12 6.09 -26.65 -0.16 -1.28 16 5 C -0.12 -1.43 5.27 -26.61 -0.14 -1.57 16 6 C 0.09 1.23 2.66 -67.63 -0.18 1.05 16 7 H 0.05 0.67 7.80 -51.93 -0.41 0.26 16 8 N -0.68 -11.09 6.30 -107.91 -0.68 -11.77 16 9 C 0.13 2.25 5.60 -4.98 -0.03 2.23 16 10 C -0.21 -4.63 5.41 -104.33 -0.56 -5.19 16 11 C -0.08 -1.87 9.67 -39.66 -0.38 -2.25 16 12 C -0.17 -4.41 8.70 -38.87 -0.34 -4.75 16 13 C 0.11 3.03 5.57 -106.83 -0.60 2.43 16 14 C -0.46 -12.46 9.05 -37.74 -0.34 -12.80 16 15 H 0.08 1.96 7.91 -52.49 -0.41 1.54 16 16 C 0.08 1.93 5.14 -17.34 -0.09 1.84 16 17 N -0.79 -20.71 10.95 55.55 0.61 -20.10 16 18 Si 0.91 18.80 29.59 -169.99 -5.03 13.77 16 19 H -0.26 -5.43 7.11 56.52 0.40 -5.02 16 20 H -0.28 -5.62 7.11 56.52 0.40 -5.21 16 21 H -0.27 -5.44 7.11 56.52 0.40 -5.03 16 22 C -0.23 -5.64 9.80 -38.88 -0.38 -6.02 16 23 C -0.09 -1.90 9.67 -39.66 -0.38 -2.29 16 24 C 0.07 0.91 4.96 -3.83 -0.02 0.89 16 25 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 26 H 0.07 0.54 8.09 -51.93 -0.42 0.12 16 27 H 0.02 0.24 8.14 -51.93 -0.42 -0.18 16 28 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.07 0.62 8.09 -51.93 -0.42 0.20 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.34 5.58 8.36 -39.29 -0.33 5.25 16 35 H 0.06 1.07 7.39 -51.93 -0.38 0.68 16 36 H 0.02 0.32 8.00 -51.93 -0.42 -0.10 16 37 H 0.09 1.89 8.06 -52.48 -0.42 1.47 16 38 H 0.12 3.17 6.16 -52.49 -0.32 2.84 16 39 H 0.28 6.70 8.30 -40.82 -0.34 6.36 16 40 H 0.09 2.10 8.06 -52.48 -0.42 1.68 16 41 H 0.08 1.62 8.06 -52.49 -0.42 1.20 16 42 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.07 1.04 7.46 -51.93 -0.39 0.65 16 LS Contribution 342.58 15.07 5.16 5.16 Total: -1.00 -27.25 342.58 -11.47 -38.72 By element: Atomic # 1 Polarization: 15.42 SS G_CDS: -7.28 Total: 8.13 kcal Atomic # 6 Polarization: -23.28 SS G_CDS: -3.05 Total: -26.33 kcal Atomic # 7 Polarization: -38.19 SS G_CDS: -1.26 Total: -39.46 kcal Atomic # 14 Polarization: 18.80 SS G_CDS: -5.03 Total: 13.77 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -27.25 -11.47 -38.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206441665.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.182 kcal (2) G-P(sol) polarization free energy of solvation -27.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds