Wall clock time and date at job start Mon Mar 30 2020 01:20:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46853 * 110.99950 * 2 1 4 4 C 1.53036 * 109.52131 * 174.15766 * 3 2 1 5 5 C 1.53121 * 109.27680 * 59.18437 * 4 3 2 6 6 C 1.53123 * 109.16179 * 302.33756 * 5 4 3 7 7 H 1.08996 * 109.53858 * 297.70087 * 6 5 4 8 8 N 1.46896 * 109.50447 * 177.59714 * 6 5 4 9 9 C 1.46903 * 110.99947 * 155.20243 * 8 6 5 10 10 C 1.50693 * 109.46892 * 179.97438 * 9 8 6 11 11 C 1.38629 * 119.75270 * 269.72163 * 10 9 8 12 12 C 1.37622 * 120.25073 * 179.72445 * 11 10 9 13 13 C 1.40711 * 119.74255 * 0.57160 * 12 11 10 14 14 C 1.41400 * 120.24519 * 179.67986 * 13 12 11 15 15 H 1.07993 * 120.00417 * 204.40825 * 14 13 12 16 16 C 1.39949 * 119.99722 * 24.41101 * 14 13 12 17 17 N 1.30829 * 120.00062 * 17.84366 * 16 14 13 18 18 Si 1.86798 * 120.00043 * 197.84420 * 16 14 13 19 19 H 1.48505 * 109.46835 * 60.00206 * 18 16 14 20 20 H 1.48500 * 109.47096 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47401 * 300.00354 * 18 16 14 22 22 C 1.40712 * 119.51307 * 359.70710 * 13 12 11 23 23 C 1.37613 * 119.74639 * 359.97438 * 22 13 12 24 24 C 1.46850 * 111.00283 * 235.79054 * 2 1 3 25 25 H 1.09002 * 109.47040 * 184.20855 * 1 2 3 26 26 H 1.08994 * 109.47140 * 304.20791 * 1 2 3 27 27 H 1.09002 * 109.46987 * 64.21070 * 1 2 3 28 28 H 1.08997 * 109.46258 * 294.17597 * 3 2 1 29 29 H 1.09003 * 109.45693 * 54.14617 * 3 2 1 30 30 H 1.09003 * 109.50341 * 179.11516 * 4 3 2 31 31 H 1.08999 * 109.50723 * 299.20214 * 4 3 2 32 32 H 1.09007 * 109.52051 * 182.43740 * 5 4 3 33 33 H 1.09001 * 109.52522 * 62.24728 * 5 4 3 34 34 H 1.00898 * 111.00320 * 31.24612 * 8 6 5 35 35 H 1.09001 * 109.46874 * 59.99932 * 9 8 6 36 36 H 1.09000 * 109.46583 * 299.99488 * 9 8 6 37 37 H 1.08007 * 119.87515 * 359.97438 * 11 10 9 38 38 H 1.08002 * 120.12595 * 180.28405 * 12 11 10 39 39 H 0.96994 * 119.99970 * 179.97438 * 17 16 14 40 40 H 1.08007 * 120.12669 * 180.02562 * 22 13 12 41 41 H 1.08000 * 119.87953 * 180.02562 * 23 22 13 42 42 H 1.08997 * 109.45955 * 65.82232 * 24 2 1 43 43 H 1.09003 * 109.46207 * 305.85542 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3710 0.0000 4 6 3.5181 1.3342 0.1468 5 6 4.1188 0.5371 -1.0144 6 6 3.5182 -0.8715 -1.0208 7 1 3.7814 -1.3842 -0.0957 8 7 4.0462 -1.6245 -2.1663 9 6 3.9953 -3.0708 -1.9140 10 6 4.5432 -3.8086 -3.1084 11 6 3.6890 -4.1950 -4.1295 12 6 4.1793 -4.8643 -5.2276 13 6 5.5514 -5.1665 -5.3056 14 6 6.0654 -5.8597 -6.4258 15 1 6.9785 -6.4293 -6.3360 16 6 5.3908 -5.8074 -7.6509 17 7 4.5066 -4.8687 -7.8713 18 14 5.7530 -7.0781 -8.9714 19 1 5.4462 -8.4345 -8.4505 20 1 4.9134 -6.8042 -10.1653 21 1 7.1875 -7.0053 -9.3483 22 6 6.4081 -4.7745 -4.2605 23 6 5.8969 -4.1004 -3.1751 24 6 1.9953 -0.7708 -1.1337 25 1 -0.3633 -1.0249 0.0754 26 1 -0.3633 0.5777 0.8498 27 1 -0.3633 0.4471 -0.9253 28 1 1.7325 1.8609 -0.9375 29 1 1.5634 1.9257 0.8330 30 1 3.9099 2.3513 0.1310 31 1 3.7813 0.8574 1.0910 32 1 5.1998 0.4715 -0.8904 33 1 3.8887 1.0355 -1.9560 34 1 4.9845 -1.3296 -2.3915 35 1 2.9622 -3.3736 -1.7429 36 1 4.5938 -3.3075 -1.0344 37 1 2.6354 -3.9665 -4.0650 38 1 3.5128 -5.1604 -6.0241 39 1 4.0394 -4.8323 -8.7205 40 1 7.4630 -5.0010 -4.3103 41 1 6.5526 -3.7981 -2.3719 42 1 1.7325 -0.2708 -2.0660 43 1 1.5635 -1.7716 -1.1242 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206441665.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:44 Heat of formation + Delta-G solvation = -5.503542 kcal Electronic energy + Delta-G solvation = -20619.507697 eV Core-core repulsion = 17662.513939 eV Total energy + Delta-G solvation = -2956.993758 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.25416 -39.40811 -36.83065 -35.44473 -33.85529 -32.16414 -31.15076 -30.03336 -27.92978 -27.39961 -24.96669 -23.71370 -22.91479 -22.72039 -21.61156 -20.62970 -19.20441 -17.24613 -17.11495 -16.52465 -16.23623 -15.80942 -15.70774 -15.58736 -15.36182 -15.20407 -14.45542 -14.15947 -14.06490 -13.79695 -13.62681 -13.47689 -13.26974 -13.16005 -12.79023 -12.69054 -12.54890 -12.48176 -12.16330 -12.06684 -11.77183 -11.62256 -11.33112 -11.25215 -11.19907 -10.97170 -9.38412 -9.33100 -9.29870 -9.13115 -8.62182 -6.32073 0.96905 1.17058 1.37609 1.48877 1.53564 2.21008 2.67914 2.90231 3.48806 3.76801 3.83209 3.93264 4.10647 4.23947 4.31258 4.38753 4.39249 4.53807 4.56887 4.59693 4.60829 4.66938 4.75322 4.82105 4.83768 4.96392 4.98685 5.00023 5.08168 5.09393 5.17209 5.20964 5.38426 5.41149 5.48442 5.73005 5.94005 6.00714 6.11977 6.12994 6.24551 6.33813 6.40973 6.54583 6.72857 6.95858 7.06320 8.34381 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.034613 B = 0.003197 C = 0.003084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.753470 B = 8754.763027 C = 9077.825465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.553 5.553 3 C 0.052 3.948 4 C -0.108 4.108 5 C -0.121 4.121 6 C 0.094 3.906 7 H 0.046 0.954 8 N -0.691 5.691 9 C 0.135 3.865 10 C -0.200 4.200 11 C -0.086 4.086 12 C -0.192 4.192 13 C 0.079 3.921 14 C -0.504 4.504 15 H 0.074 0.926 16 C 0.034 3.966 17 N -0.826 5.826 18 Si 0.982 3.018 19 H -0.261 1.261 20 H -0.268 1.268 21 H -0.259 1.259 22 C -0.243 4.243 23 C -0.084 4.084 24 C 0.073 3.927 25 H 0.067 0.933 26 H 0.084 0.916 27 H 0.022 0.978 28 H 0.028 0.972 29 H 0.090 0.910 30 H 0.087 0.913 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.059 0.941 34 H 0.343 0.657 35 H 0.064 0.936 36 H 0.034 0.966 37 H 0.098 0.902 38 H 0.097 0.903 39 H 0.287 0.713 40 H 0.096 0.904 41 H 0.115 0.885 42 H 0.024 0.976 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.865 10.429 12.930 17.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.279 5.279 3 C -0.076 4.076 4 C -0.147 4.147 5 C -0.159 4.159 6 C -0.016 4.016 7 H 0.064 0.936 8 N -0.323 5.323 9 C 0.007 3.993 10 C -0.201 4.201 11 C -0.105 4.105 12 C -0.211 4.211 13 C 0.077 3.923 14 C -0.534 4.534 15 H 0.093 0.907 16 C -0.180 4.180 17 N -0.452 5.452 18 Si 0.802 3.198 19 H -0.185 1.185 20 H -0.192 1.192 21 H -0.183 1.183 22 C -0.263 4.263 23 C -0.102 4.102 24 C -0.056 4.056 25 H 0.086 0.914 26 H 0.103 0.897 27 H 0.041 0.959 28 H 0.046 0.954 29 H 0.109 0.891 30 H 0.106 0.894 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.078 0.922 34 H 0.162 0.838 35 H 0.082 0.918 36 H 0.052 0.948 37 H 0.117 0.883 38 H 0.115 0.885 39 H 0.098 0.902 40 H 0.114 0.886 41 H 0.133 0.867 42 H 0.043 0.957 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.470 10.325 12.849 17.367 hybrid contribution 0.499 -0.385 -1.173 1.332 sum -4.971 9.940 11.676 16.119 Atomic orbital electron populations 1.22387 0.86282 1.02634 1.00943 1.61913 1.08570 1.14381 1.42992 1.22197 0.96015 0.88569 1.00790 1.21537 0.94097 1.00829 0.98205 1.21760 1.00251 0.94403 0.99465 1.21459 0.94159 0.94357 0.91622 0.93639 1.60429 1.28886 1.03933 1.39085 1.20467 0.99315 0.86441 0.93070 1.19331 0.93536 1.08579 0.98684 1.20712 0.98065 0.97895 0.93840 1.21263 0.95572 1.05898 0.98397 1.17958 0.92033 0.89808 0.92488 1.19822 1.09645 1.28897 0.94986 0.90740 1.26769 0.93187 0.96466 1.01612 1.69891 1.21328 1.28491 1.25454 0.85262 0.79510 0.78589 0.76389 1.18527 1.19195 1.18320 1.21150 0.97962 1.08729 0.98410 1.20684 0.94624 0.98012 0.96915 1.21923 0.95027 0.97656 0.90978 0.91432 0.89703 0.95909 0.95383 0.89131 0.89408 0.91093 0.91084 0.92178 0.83768 0.91780 0.94781 0.88346 0.88477 0.90230 0.88617 0.86655 0.95723 0.92011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 9.59 127.69 1.22 1.68 16 2 N -0.55 -11.89 4.91 -922.57 -4.53 -16.42 16 3 C 0.05 0.92 5.46 86.32 0.47 1.39 16 4 C -0.11 -1.82 6.09 30.65 0.19 -1.63 16 5 C -0.12 -2.54 5.27 30.68 0.16 -2.38 16 6 C 0.09 2.39 2.66 44.97 0.12 2.51 16 7 H 0.05 1.20 7.80 -2.39 -0.02 1.18 16 8 N -0.69 -21.38 6.30 -495.31 -3.12 -24.50 16 9 C 0.14 4.56 5.60 85.55 0.48 5.04 16 10 C -0.20 -8.49 5.41 -19.68 -0.11 -8.59 16 11 C -0.09 -4.13 9.67 22.22 0.21 -3.91 16 12 C -0.19 -10.45 8.70 22.73 0.20 -10.25 16 13 C 0.08 4.42 5.57 -21.29 -0.12 4.30 16 14 C -0.50 -27.98 9.05 23.46 0.21 -27.77 16 15 H 0.07 3.98 7.91 -2.91 -0.02 3.95 16 16 C 0.03 1.78 5.14 85.26 0.44 2.22 16 17 N -0.83 -44.55 10.95 21.83 0.24 -44.32 16 18 Si 0.98 39.10 29.59 68.60 2.03 41.13 16 19 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 20 H -0.27 -10.06 7.11 99.48 0.71 -9.35 16 21 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 22 C -0.24 -12.14 9.80 22.73 0.22 -11.92 16 23 C -0.08 -3.64 9.67 22.22 0.21 -3.43 16 24 C 0.07 1.88 4.96 86.33 0.43 2.31 16 25 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 26 H 0.08 1.18 8.09 -2.39 -0.02 1.16 16 27 H 0.02 0.41 8.14 -2.39 -0.02 0.39 16 28 H 0.03 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.09 1.28 8.09 -2.39 -0.02 1.26 16 30 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.07 1.20 8.14 -2.39 -0.02 1.19 16 32 H 0.07 1.38 8.14 -2.38 -0.02 1.36 16 33 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.34 10.55 8.36 -89.70 -0.75 9.80 16 35 H 0.06 2.14 7.39 -2.39 -0.02 2.12 16 36 H 0.03 1.06 8.00 -2.39 -0.02 1.04 16 37 H 0.10 4.36 8.06 -2.91 -0.02 4.33 16 38 H 0.10 5.57 6.16 -2.91 -0.02 5.55 16 39 H 0.29 14.04 8.30 -92.71 -0.77 13.27 16 40 H 0.10 4.53 8.06 -2.91 -0.02 4.51 16 41 H 0.12 4.22 8.06 -2.91 -0.02 4.20 16 42 H 0.02 0.70 8.14 -2.39 -0.02 0.69 16 43 H 0.06 1.70 7.46 -2.39 -0.02 1.69 16 Total: -1.00 -59.90 342.58 -0.81 -60.71 By element: Atomic # 1 Polarization: 33.60 SS G_CDS: 0.22 Total: 33.82 kcal Atomic # 6 Polarization: -54.78 SS G_CDS: 4.35 Total: -50.43 kcal Atomic # 7 Polarization: -77.82 SS G_CDS: -7.41 Total: -85.24 kcal Atomic # 14 Polarization: 39.10 SS G_CDS: 2.03 Total: 41.13 kcal Total: -59.90 -0.81 -60.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206441665.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.208 kcal (2) G-P(sol) polarization free energy of solvation -59.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds