Wall clock time and date at job start Mon Mar 30 2020 01:54:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86807 * 119.99734 * 2 1 4 4 H 1.48498 * 109.47074 * 270.00149 * 3 2 1 5 5 H 1.48505 * 109.46996 * 29.99858 * 3 2 1 6 6 H 1.48497 * 109.46952 * 149.99879 * 3 2 1 7 7 C 1.37874 * 120.00430 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00119 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99831 * 359.97438 * 7 2 1 10 10 H 1.09008 * 109.47107 * 299.99995 * 9 7 2 11 11 C 1.53003 * 109.47186 * 60.00225 * 9 7 2 12 12 Cl 1.80303 * 109.47042 * 185.00212 * 11 9 7 13 13 O 1.42896 * 109.47260 * 180.02562 * 9 7 2 14 14 C 1.35677 * 117.00575 * 149.99976 * 13 9 7 15 15 C 1.38922 * 119.68825 * 180.25438 * 14 13 9 16 16 C 1.38375 * 119.10973 * 180.27659 * 15 14 13 17 17 C 1.38830 * 118.48323 * 359.47636 * 16 15 14 18 18 C 1.50704 * 120.35230 * 180.30216 * 17 16 15 19 19 Cl 1.80303 * 109.47338 * 89.99964 * 18 17 16 20 20 C 1.38038 * 119.29492 * 0.27495 * 17 16 15 21 21 N 1.31969 * 120.83428 * 359.97438 * 20 17 16 22 22 H 0.96998 * 120.00534 * 0.02562 * 1 2 3 23 23 H 1.09005 * 109.46996 * 304.99667 * 11 9 7 24 24 H 1.08997 * 109.47020 * 65.00164 * 11 9 7 25 25 H 1.07999 * 120.44049 * 0.02562 * 15 14 13 26 26 H 1.08002 * 120.75913 * 179.75613 * 16 15 14 27 27 H 1.09001 * 109.46984 * 209.99988 * 18 17 16 28 28 H 1.08998 * 109.47216 * 329.99658 * 18 17 16 29 29 H 1.08003 * 119.58496 * 179.97438 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6528 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 1 0.6248 -2.5571 0.8897 11 6 0.3711 -2.5800 -1.2495 12 17 -0.6394 -4.0715 -1.1772 13 8 2.1798 -3.5852 -0.0005 14 6 1.7844 -4.7338 0.6039 15 6 2.6454 -5.8234 0.6410 16 6 2.2278 -6.9907 1.2555 17 6 0.9614 -7.0235 1.8235 18 6 0.4665 -8.2708 2.5094 19 17 0.9150 -8.2153 4.2548 20 6 0.1607 -5.9012 1.7540 21 7 0.5850 -4.8036 1.1566 22 1 -0.4851 0.8400 -0.0004 23 1 -0.2765 -1.7043 -1.2950 24 1 1.0024 -2.6115 -2.1374 25 1 3.6260 -5.7614 0.1928 26 1 2.8739 -7.8552 1.2963 27 1 -0.6177 -8.3316 2.4146 28 1 0.9214 -9.1457 2.0450 29 1 -0.8254 -5.9217 2.1939 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206674231.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:40 Heat of formation + Delta-G solvation = -30.863736 kcal Electronic energy + Delta-G solvation = -16727.714751 eV Core-core repulsion = 13702.679661 eV Total energy + Delta-G solvation = -3025.035089 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 275.022 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.09238 -37.53970 -35.91118 -34.70924 -33.47657 -32.52754 -31.35102 -29.27725 -26.23068 -25.26788 -23.63725 -21.91226 -20.77534 -17.66207 -17.08355 -16.06424 -15.33471 -15.06276 -14.82317 -14.27264 -14.17044 -13.73562 -13.33796 -13.04053 -12.78680 -12.43095 -12.00276 -11.90723 -11.61303 -11.12994 -10.99974 -10.69361 -10.54857 -10.42939 -10.33939 -9.81532 -9.50038 -9.35664 -8.99134 -8.92879 -8.57867 -7.76529 -6.38406 -4.46815 1.33853 1.62969 2.56917 3.14774 3.22038 3.25968 3.52290 3.90998 4.26381 4.29922 4.65109 4.77040 4.87614 4.97208 5.14861 5.29795 5.60060 5.63981 6.06411 6.19813 6.28858 6.39569 6.44680 6.72699 7.03649 7.29991 7.54414 7.79328 8.24373 8.41691 8.69124 9.20068 10.68395 Molecular weight = 275.02amu Principal moments of inertia in cm(-1) A = 0.026469 B = 0.004899 C = 0.004590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.593784 B = 5713.779983 C = 6098.289700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.065 3.935 3 Si 0.915 3.085 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.270 1.270 7 C -0.526 4.526 8 H 0.074 0.926 9 C 0.212 3.788 10 H 0.068 0.932 11 C -0.030 4.030 12 Cl -0.235 7.235 13 O -0.301 6.301 14 C 0.356 3.644 15 C -0.210 4.210 16 C -0.025 4.025 17 C -0.230 4.230 18 C 0.031 3.969 19 Cl -0.192 7.192 20 C 0.167 3.833 21 N -0.508 5.508 22 H 0.271 0.729 23 H 0.132 0.868 24 H 0.067 0.933 25 H 0.136 0.864 26 H 0.132 0.868 27 H 0.098 0.902 28 H 0.096 0.904 29 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.775 -12.961 1.955 13.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.139 4.139 3 Si 0.742 3.258 4 H -0.202 1.202 5 H -0.208 1.208 6 H -0.195 1.195 7 C -0.564 4.564 8 H 0.092 0.908 9 C 0.157 3.843 10 H 0.086 0.914 11 C -0.093 4.093 12 Cl -0.210 7.210 13 O -0.206 6.206 14 C 0.177 3.823 15 C -0.231 4.231 16 C -0.051 4.051 17 C -0.234 4.234 18 C -0.032 4.032 19 Cl -0.166 7.166 20 C 0.008 3.992 21 N -0.230 5.230 22 H 0.081 0.919 23 H 0.150 0.850 24 H 0.086 0.914 25 H 0.154 0.846 26 H 0.150 0.850 27 H 0.117 0.883 28 H 0.115 0.885 29 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 0.298 -12.064 1.884 12.214 hybrid contribution 0.656 0.168 0.018 0.678 sum 0.954 -11.896 1.902 12.085 Atomic orbital electron populations 1.69822 1.05943 1.27922 1.48522 1.24958 0.95164 0.99694 0.94064 0.86198 0.79673 0.81487 0.78457 1.20200 1.20755 1.19451 1.21024 0.94221 0.88109 1.53006 0.90772 1.20503 0.87185 0.81508 0.95125 0.91412 1.25591 0.95422 0.86966 1.01294 1.98628 1.75608 1.47710 1.99018 1.86307 1.45196 1.19771 1.69373 1.20110 0.87921 0.87386 0.86899 1.21019 1.01830 0.92541 1.07742 1.21060 0.94149 0.96895 0.92988 1.20339 0.97637 0.97604 1.07782 1.22894 1.02365 0.97221 0.80726 1.98731 1.94580 1.99153 1.24108 1.22258 0.98518 0.86718 0.91672 1.67707 1.15106 1.27841 1.12351 0.91878 0.85041 0.91405 0.84589 0.85009 0.88308 0.88535 0.83322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.57 11.29 55.43 0.63 -22.94 15 2 C 0.06 1.67 5.29 -17.82 -0.09 1.58 15 3 Si 0.92 20.13 29.54 -169.99 -5.02 15.11 15 4 H -0.28 -5.97 7.11 56.52 0.40 -5.57 15 5 H -0.28 -6.15 7.11 56.52 0.40 -5.75 15 6 H -0.27 -5.91 7.11 56.52 0.40 -5.51 15 7 C -0.53 -13.94 8.89 -34.44 -0.31 -14.25 15 8 H 0.07 1.96 7.81 -52.49 -0.41 1.55 15 9 C 0.21 5.31 2.25 -27.88 -0.06 5.25 15 10 H 0.07 1.86 6.98 -51.92 -0.36 1.50 15 11 C -0.03 -0.71 6.17 37.16 0.23 -0.48 15 12 Cl -0.24 -5.03 25.91 -51.86 -1.34 -6.37 15 13 O -0.30 -7.01 9.73 -18.73 -0.18 -7.19 15 14 C 0.36 7.23 6.64 -17.12 -0.11 7.11 15 15 C -0.21 -3.44 10.04 -39.28 -0.39 -3.84 15 16 C -0.03 -0.34 9.85 -39.31 -0.39 -0.73 15 17 C -0.23 -3.07 5.28 -104.47 -0.55 -3.62 15 18 C 0.03 0.31 6.80 36.01 0.25 0.55 15 19 Cl -0.19 -2.26 29.13 -51.86 -1.51 -3.77 15 20 C 0.17 2.68 10.85 -17.57 -0.19 2.49 15 21 N -0.51 -10.15 6.36 -13.33 -0.08 -10.24 15 22 H 0.27 6.83 8.31 -40.82 -0.34 6.49 15 23 H 0.13 3.32 5.95 -51.93 -0.31 3.01 15 24 H 0.07 1.54 8.14 -51.93 -0.42 1.12 15 25 H 0.14 1.99 8.06 -52.49 -0.42 1.57 15 26 H 0.13 1.33 8.06 -52.49 -0.42 0.91 15 27 H 0.10 0.82 8.09 -51.93 -0.42 0.40 15 28 H 0.10 0.75 8.09 -51.93 -0.42 0.33 15 29 H 0.15 2.05 8.06 -52.48 -0.42 1.63 15 LS Contribution 282.91 15.07 4.26 4.26 Total: -1.00 -27.76 282.91 -7.63 -35.39 By element: Atomic # 1 Polarization: 4.42 SS G_CDS: -2.75 Total: 1.67 kcal Atomic # 6 Polarization: -4.30 SS G_CDS: -1.63 Total: -5.93 kcal Atomic # 7 Polarization: -33.72 SS G_CDS: 0.54 Total: -33.18 kcal Atomic # 8 Polarization: -7.01 SS G_CDS: -0.18 Total: -7.19 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.02 Total: 15.11 kcal Atomic # 17 Polarization: -7.29 SS G_CDS: -2.85 Total: -10.14 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -27.76 -7.63 -35.39 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206674231.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.527 kcal (2) G-P(sol) polarization free energy of solvation -27.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds