Wall clock time and date at job start Mon Mar 30 2020 01:54:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86807 * 119.99734 * 2 1 4 4 H 1.48498 * 109.47074 * 270.00149 * 3 2 1 5 5 H 1.48505 * 109.46996 * 29.99858 * 3 2 1 6 6 H 1.48497 * 109.46952 * 149.99879 * 3 2 1 7 7 C 1.37874 * 120.00430 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00119 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99831 * 359.97438 * 7 2 1 10 10 H 1.09008 * 109.47107 * 299.99995 * 9 7 2 11 11 C 1.53003 * 109.47186 * 60.00225 * 9 7 2 12 12 Cl 1.80303 * 109.47042 * 185.00212 * 11 9 7 13 13 O 1.42896 * 109.47260 * 180.02562 * 9 7 2 14 14 C 1.35677 * 117.00575 * 149.99976 * 13 9 7 15 15 C 1.38922 * 119.68825 * 180.25438 * 14 13 9 16 16 C 1.38375 * 119.10973 * 180.27659 * 15 14 13 17 17 C 1.38830 * 118.48323 * 359.47636 * 16 15 14 18 18 C 1.50704 * 120.35230 * 180.30216 * 17 16 15 19 19 Cl 1.80303 * 109.47338 * 89.99964 * 18 17 16 20 20 C 1.38038 * 119.29492 * 0.27495 * 17 16 15 21 21 N 1.31969 * 120.83428 * 359.97438 * 20 17 16 22 22 H 0.96998 * 120.00534 * 0.02562 * 1 2 3 23 23 H 1.09005 * 109.46996 * 304.99667 * 11 9 7 24 24 H 1.08997 * 109.47020 * 65.00164 * 11 9 7 25 25 H 1.07999 * 120.44049 * 0.02562 * 15 14 13 26 26 H 1.08002 * 120.75913 * 179.75613 * 16 15 14 27 27 H 1.09001 * 109.46984 * 209.99988 * 18 17 16 28 28 H 1.08998 * 109.47216 * 329.99658 * 18 17 16 29 29 H 1.08003 * 119.58496 * 179.97438 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6528 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 1 0.6248 -2.5571 0.8897 11 6 0.3711 -2.5800 -1.2495 12 17 -0.6394 -4.0715 -1.1772 13 8 2.1798 -3.5852 -0.0005 14 6 1.7844 -4.7338 0.6039 15 6 2.6454 -5.8234 0.6410 16 6 2.2278 -6.9907 1.2555 17 6 0.9614 -7.0235 1.8235 18 6 0.4665 -8.2708 2.5094 19 17 0.9150 -8.2153 4.2548 20 6 0.1607 -5.9012 1.7540 21 7 0.5850 -4.8036 1.1566 22 1 -0.4851 0.8400 -0.0004 23 1 -0.2765 -1.7043 -1.2950 24 1 1.0024 -2.6115 -2.1374 25 1 3.6260 -5.7614 0.1928 26 1 2.8739 -7.8552 1.2963 27 1 -0.6177 -8.3316 2.4146 28 1 0.9214 -9.1457 2.0450 29 1 -0.8254 -5.9217 2.1939 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206674231.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:39 Heat of formation + Delta-G solvation = -46.682947 kcal Electronic energy + Delta-G solvation = -16728.400723 eV Core-core repulsion = 13702.679661 eV Total energy + Delta-G solvation = -3025.721062 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 275.022 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.44818 -39.07879 -36.85393 -36.47379 -35.36734 -33.76826 -32.66878 -31.05140 -27.42976 -27.15556 -24.99157 -23.27961 -22.36726 -19.23356 -18.83724 -17.63694 -16.73363 -16.50596 -16.37232 -15.55782 -15.30673 -15.25707 -14.66741 -14.36850 -14.03433 -14.01661 -13.68090 -13.36710 -13.15777 -12.93323 -12.78526 -12.43352 -12.13160 -11.56809 -11.48504 -11.28728 -11.15836 -10.96644 -10.68257 -10.56589 -10.15031 -9.17271 -8.35307 -6.52333 0.13273 0.43264 1.40743 1.41910 1.53951 1.64586 1.68142 2.24449 2.60346 2.97597 3.01889 3.50711 3.70076 3.93684 4.07075 4.27864 4.41820 4.48684 4.53295 4.60362 4.89317 4.92047 5.08922 5.26877 5.34079 5.51340 5.68722 5.85281 6.46986 6.74465 7.11524 7.21414 8.71298 Molecular weight = 275.02amu Principal moments of inertia in cm(-1) A = 0.026469 B = 0.004899 C = 0.004590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.593784 B = 5713.779983 C = 6098.289700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.025 3.975 3 Si 0.979 3.021 4 H -0.266 1.266 5 H -0.276 1.276 6 H -0.269 1.269 7 C -0.553 4.553 8 H 0.066 0.934 9 C 0.223 3.777 10 H 0.034 0.966 11 C -0.021 4.021 12 Cl -0.216 7.216 13 O -0.323 6.323 14 C 0.313 3.687 15 C -0.212 4.212 16 C -0.016 4.016 17 C -0.208 4.208 18 C 0.035 3.965 19 Cl -0.204 7.204 20 C 0.145 3.855 21 N -0.543 5.543 22 H 0.275 0.725 23 H 0.113 0.887 24 H 0.070 0.930 25 H 0.149 0.851 26 H 0.176 0.824 27 H 0.118 0.882 28 H 0.129 0.871 29 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.256 -14.774 2.232 14.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.177 4.177 3 Si 0.803 3.197 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.193 1.193 7 C -0.590 4.590 8 H 0.084 0.916 9 C 0.167 3.833 10 H 0.052 0.948 11 C -0.084 4.084 12 Cl -0.190 7.190 13 O -0.230 6.230 14 C 0.135 3.865 15 C -0.233 4.233 16 C -0.041 4.041 17 C -0.211 4.211 18 C -0.028 4.028 19 Cl -0.178 7.178 20 C -0.013 4.013 21 N -0.265 5.265 22 H 0.084 0.916 23 H 0.131 0.869 24 H 0.088 0.912 25 H 0.167 0.833 26 H 0.194 0.806 27 H 0.137 0.863 28 H 0.148 0.852 29 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 0.764 -13.917 2.173 14.107 hybrid contribution 0.448 0.512 0.011 0.680 sum 1.212 -13.405 2.184 13.636 Atomic orbital electron populations 1.69924 1.07169 1.28858 1.48628 1.25764 0.95953 1.02714 0.93224 0.85223 0.78323 0.77330 0.78854 1.19144 1.20151 1.19339 1.21284 0.94094 0.89576 1.54061 0.91582 1.20065 0.87067 0.82073 0.94062 0.94778 1.25237 0.95147 0.87171 1.00832 1.98616 1.74963 1.46355 1.99027 1.86224 1.45100 1.20590 1.71089 1.20444 0.89415 0.87456 0.89180 1.21297 1.01863 0.92327 1.07773 1.21563 0.94529 0.96968 0.91035 1.20695 0.96936 0.97814 1.05688 1.23113 1.03968 0.96313 0.79395 1.98741 1.94708 1.99137 1.25177 1.22664 0.99768 0.86838 0.92009 1.67552 1.15620 1.29988 1.13381 0.91577 0.86943 0.91162 0.83289 0.80642 0.86319 0.85245 0.81879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.52 11.29 21.45 0.24 -49.28 15 2 C 0.02 1.30 5.29 84.65 0.45 1.75 15 3 Si 0.98 41.58 29.54 68.60 2.03 43.60 15 4 H -0.27 -10.84 7.11 99.48 0.71 -10.13 15 5 H -0.28 -11.40 7.11 99.48 0.71 -10.69 15 6 H -0.27 -11.28 7.11 99.48 0.71 -10.57 15 7 C -0.55 -30.34 8.89 25.60 0.23 -30.11 15 8 H 0.07 3.62 7.81 -2.91 -0.02 3.60 15 9 C 0.22 11.68 2.25 29.85 0.07 11.74 15 10 H 0.03 1.99 6.98 -2.38 -0.02 1.97 15 11 C -0.02 -1.01 6.17 71.98 0.44 -0.57 15 12 Cl -0.22 -9.33 25.91 -2.72 -0.07 -9.40 15 13 O -0.32 -15.63 9.73 -89.95 -0.88 -16.50 15 14 C 0.31 12.91 6.64 84.79 0.56 13.47 15 15 C -0.21 -6.68 10.04 22.47 0.23 -6.46 15 16 C -0.02 -0.37 9.85 22.44 0.22 -0.15 15 17 C -0.21 -4.93 5.28 -19.77 -0.10 -5.04 15 18 C 0.03 0.54 6.80 71.24 0.48 1.02 15 19 Cl -0.20 -4.19 29.13 -2.72 -0.08 -4.26 15 20 C 0.15 4.49 10.85 84.62 0.92 5.41 15 21 N -0.54 -22.02 6.36 -308.94 -1.96 -23.99 15 22 H 0.27 14.03 8.31 -92.71 -0.77 13.26 15 23 H 0.11 5.91 5.95 -2.38 -0.01 5.89 15 24 H 0.07 3.30 8.14 -2.39 -0.02 3.28 15 25 H 0.15 4.17 8.06 -2.91 -0.02 4.15 15 26 H 0.18 2.60 8.06 -2.91 -0.02 2.57 15 27 H 0.12 1.46 8.09 -2.39 -0.02 1.44 15 28 H 0.13 1.28 8.09 -2.39 -0.02 1.26 15 29 H 0.16 4.34 8.06 -2.91 -0.02 4.32 15 Total: -1.00 -62.34 282.91 3.94 -58.39 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: 1.17 Total: 10.37 kcal Atomic # 6 Polarization: -12.42 SS G_CDS: 3.50 Total: -8.93 kcal Atomic # 7 Polarization: -71.55 SS G_CDS: -1.72 Total: -73.27 kcal Atomic # 8 Polarization: -15.63 SS G_CDS: -0.88 Total: -16.50 kcal Atomic # 14 Polarization: 41.58 SS G_CDS: 2.03 Total: 43.60 kcal Atomic # 17 Polarization: -13.52 SS G_CDS: -0.15 Total: -13.67 kcal Total: -62.34 3.94 -58.39 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206674231.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.711 kcal (2) G-P(sol) polarization free energy of solvation -62.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds