Wall clock time and date at job start Mon Mar 30 2020 01:55:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86798 * 120.00150 * 2 1 4 4 H 1.48499 * 109.46809 * 270.00229 * 3 2 1 5 5 H 1.48500 * 109.47066 * 30.00086 * 3 2 1 6 6 H 1.48493 * 109.47361 * 150.00149 * 3 2 1 7 7 C 1.37880 * 119.99739 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99719 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00102 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.47365 * 299.99221 * 9 7 2 11 11 C 1.53001 * 109.47658 * 59.99941 * 9 7 2 12 12 Cl 1.80293 * 109.47532 * 185.00040 * 11 9 7 13 13 O 1.42901 * 109.47074 * 179.97438 * 9 7 2 14 14 C 1.35743 * 117.00205 * 145.89660 * 13 9 7 15 15 C 1.39282 * 120.84931 * 176.56057 * 14 13 9 16 16 C 1.37943 * 119.09499 * 180.02562 * 15 14 13 17 17 N 1.31979 * 120.82400 * 359.97438 * 16 15 14 18 18 C 1.31943 * 121.86314 * 0.02562 * 17 16 15 19 19 C 1.50699 * 119.59230 * 180.02562 * 18 17 16 20 20 Cl 1.80300 * 109.46876 * 269.99724 * 19 18 17 21 21 C 1.37993 * 120.82033 * 359.71189 * 18 17 16 22 22 H 0.97003 * 120.00032 * 359.97438 * 1 2 3 23 23 H 1.09008 * 109.46400 * 304.99893 * 11 9 7 24 24 H 1.09000 * 109.47237 * 64.99569 * 11 9 7 25 25 H 1.08009 * 120.45239 * 0.02562 * 15 14 13 26 26 H 1.08006 * 119.59142 * 179.97438 * 16 15 14 27 27 H 1.08994 * 109.47100 * 29.99091 * 19 18 17 28 28 H 1.08995 * 109.47487 * 149.99621 * 19 18 17 29 29 H 1.08004 * 120.45590 * 180.30975 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2509 -2.4991 0.0005 10 1 0.6240 -2.5567 0.8903 11 6 0.3717 -2.5805 -1.2490 12 17 -0.6388 -4.0719 -1.1768 13 8 2.1795 -3.5853 0.0005 14 6 1.8188 -4.7045 0.6787 15 6 2.6306 -5.8363 0.6722 16 6 2.2286 -6.9541 1.3734 17 7 1.0920 -6.9591 2.0442 18 6 0.2963 -5.9070 2.0743 19 6 -0.9897 -5.9687 2.8573 20 17 -2.3144 -6.5677 1.7909 21 6 0.6304 -4.7486 1.4029 22 1 -0.4850 0.8401 0.0004 23 1 -0.2757 -1.7048 -1.2952 24 1 1.0037 -2.6125 -2.1365 25 1 3.5622 -5.8387 0.1256 26 1 2.8517 -7.8363 1.3735 27 1 -0.8687 -6.6468 3.7020 28 1 -1.2403 -4.9732 3.2236 29 1 -0.0229 -3.8891 1.4356 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001223131200.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:53 Heat of formation + Delta-G solvation = -33.265972 kcal Electronic energy + Delta-G solvation = -16965.287775 eV Core-core repulsion = 13940.148517 eV Total energy + Delta-G solvation = -3025.139258 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 275.022 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.14382 -37.83700 -35.80871 -34.94319 -33.64511 -32.21301 -30.92343 -29.31296 -27.13321 -25.44142 -23.55714 -21.77279 -20.79473 -17.59509 -17.13887 -16.12261 -15.32807 -15.09274 -14.72136 -14.44430 -14.14497 -13.75962 -13.48378 -13.13486 -12.87209 -12.62380 -12.22216 -12.00910 -11.35715 -11.20047 -11.13964 -10.85075 -10.48466 -10.30140 -10.23864 -9.88920 -9.55990 -9.35969 -9.21062 -8.79343 -8.69189 -7.98055 -6.53748 -4.62520 1.26577 1.82257 2.63003 3.06140 3.14626 3.17978 3.32419 3.86083 4.20332 4.27545 4.36552 4.82122 4.84817 5.24781 5.39286 5.43046 5.60787 5.81354 6.01901 6.05725 6.13896 6.23310 6.47875 6.73494 6.92511 7.04058 7.42609 7.62565 8.09541 8.31966 8.52428 9.05832 10.53252 Molecular weight = 275.02amu Principal moments of inertia in cm(-1) A = 0.021896 B = 0.006132 C = 0.005578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.439236 B = 4565.255951 C = 5018.910556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.066 3.934 3 Si 0.917 3.083 4 H -0.275 1.275 5 H -0.281 1.281 6 H -0.269 1.269 7 C -0.526 4.526 8 H 0.077 0.923 9 C 0.204 3.796 10 H 0.052 0.948 11 C -0.039 4.039 12 Cl -0.234 7.234 13 O -0.303 6.303 14 C 0.196 3.804 15 C -0.215 4.215 16 C 0.124 3.876 17 N -0.508 5.508 18 C 0.130 3.870 19 C 0.024 3.976 20 Cl -0.170 7.170 21 C -0.221 4.221 22 H 0.274 0.726 23 H 0.135 0.865 24 H 0.075 0.925 25 H 0.136 0.864 26 H 0.156 0.844 27 H 0.107 0.893 28 H 0.107 0.893 29 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.145 -7.558 2.942 8.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.138 4.138 3 Si 0.744 3.256 4 H -0.201 1.201 5 H -0.207 1.207 6 H -0.194 1.194 7 C -0.564 4.564 8 H 0.095 0.905 9 C 0.150 3.850 10 H 0.070 0.930 11 C -0.102 4.102 12 Cl -0.208 7.208 13 O -0.213 6.213 14 C 0.140 3.860 15 C -0.237 4.237 16 C -0.032 4.032 17 N -0.223 5.223 18 C -0.006 4.006 19 C -0.039 4.039 20 Cl -0.143 7.143 21 C -0.242 4.242 22 H 0.084 0.916 23 H 0.153 0.847 24 H 0.093 0.907 25 H 0.154 0.846 26 H 0.173 0.827 27 H 0.125 0.875 28 H 0.125 0.875 29 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -0.265 -8.206 3.185 8.806 hybrid contribution 0.343 1.673 -0.644 1.825 sum 0.078 -6.534 2.541 7.011 Atomic orbital electron populations 1.69788 1.06008 1.28287 1.48247 1.24979 0.95202 0.99878 0.93757 0.86155 0.79668 0.81192 0.78621 1.20072 1.20669 1.19364 1.20998 0.94376 0.87763 1.53232 0.90476 1.20643 0.87373 0.82699 0.94289 0.93012 1.25739 0.95541 0.87216 1.01714 1.98664 1.75576 1.47542 1.98997 1.86148 1.46900 1.21885 1.66347 1.19395 0.91252 0.87604 0.87736 1.21461 1.02669 0.92939 1.06588 1.22318 0.92378 0.96636 0.91889 1.67341 1.05285 1.28529 1.21146 1.20490 0.94452 0.89522 0.96133 1.22973 0.84612 1.03218 0.93119 1.98727 1.53501 1.90465 1.71618 1.22186 0.99213 1.01020 1.01788 0.91641 0.84702 0.90661 0.84626 0.82706 0.87508 0.87475 0.83466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.24 11.29 55.43 0.63 -21.62 15 2 C 0.07 1.61 5.29 -17.82 -0.09 1.52 15 3 Si 0.92 19.25 29.54 -169.99 -5.02 14.23 15 4 H -0.28 -5.72 7.11 56.52 0.40 -5.32 15 5 H -0.28 -5.86 7.11 56.52 0.40 -5.46 15 6 H -0.27 -5.64 7.11 56.52 0.40 -5.24 15 7 C -0.53 -13.17 8.89 -34.44 -0.31 -13.47 15 8 H 0.08 1.95 7.81 -52.49 -0.41 1.54 15 9 C 0.20 4.75 2.19 -27.89 -0.06 4.69 15 10 H 0.05 1.26 5.40 -51.93 -0.28 0.98 15 11 C -0.04 -0.87 6.17 37.16 0.23 -0.64 15 12 Cl -0.23 -4.77 25.86 -51.86 -1.34 -6.11 15 13 O -0.30 -6.68 9.74 -18.94 -0.18 -6.86 15 14 C 0.20 3.82 6.00 -38.82 -0.23 3.59 15 15 C -0.22 -3.57 10.08 -39.30 -0.40 -3.97 15 16 C 0.12 1.87 11.17 -17.60 -0.20 1.68 15 17 N -0.51 -8.42 10.27 -9.55 -0.10 -8.51 15 18 C 0.13 2.18 6.15 -82.64 -0.51 1.67 15 19 C 0.02 0.34 6.94 36.01 0.25 0.59 15 20 Cl -0.17 -2.59 29.13 -51.86 -1.51 -4.10 15 21 C -0.22 -4.13 6.87 -39.30 -0.27 -4.40 15 22 H 0.27 6.52 8.31 -40.82 -0.34 6.18 15 23 H 0.14 3.20 5.95 -51.92 -0.31 2.89 15 24 H 0.07 1.63 8.14 -51.93 -0.42 1.20 15 25 H 0.14 1.97 8.06 -52.48 -0.42 1.55 15 26 H 0.16 1.75 8.06 -52.48 -0.42 1.33 15 27 H 0.11 1.27 8.14 -51.93 -0.42 0.85 15 28 H 0.11 1.32 8.07 -51.93 -0.42 0.90 15 29 H 0.15 2.92 5.34 -52.48 -0.28 2.64 15 LS Contribution 280.19 15.07 4.22 4.22 Total: -1.00 -26.05 280.19 -7.42 -33.46 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: -2.52 Total: 4.04 kcal Atomic # 6 Polarization: -7.16 SS G_CDS: -1.59 Total: -8.75 kcal Atomic # 7 Polarization: -30.66 SS G_CDS: 0.53 Total: -30.13 kcal Atomic # 8 Polarization: -6.68 SS G_CDS: -0.18 Total: -6.86 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -5.02 Total: 14.23 kcal Atomic # 17 Polarization: -7.36 SS G_CDS: -2.85 Total: -10.21 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -26.05 -7.42 -33.46 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223131200.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.198 kcal (2) G-P(sol) polarization free energy of solvation -26.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds