Wall clock time and date at job start Mon Mar 30 2020 01:55:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86798 * 120.00150 * 2 1 4 4 H 1.48499 * 109.46809 * 270.00229 * 3 2 1 5 5 H 1.48500 * 109.47066 * 30.00086 * 3 2 1 6 6 H 1.48493 * 109.47361 * 150.00149 * 3 2 1 7 7 C 1.37880 * 119.99739 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99719 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00102 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.47365 * 299.99221 * 9 7 2 11 11 C 1.53001 * 109.47658 * 59.99941 * 9 7 2 12 12 Cl 1.80293 * 109.47532 * 185.00040 * 11 9 7 13 13 O 1.42901 * 109.47074 * 179.97438 * 9 7 2 14 14 C 1.35743 * 117.00205 * 145.89660 * 13 9 7 15 15 C 1.39282 * 120.84931 * 176.56057 * 14 13 9 16 16 C 1.37943 * 119.09499 * 180.02562 * 15 14 13 17 17 N 1.31979 * 120.82400 * 359.97438 * 16 15 14 18 18 C 1.31943 * 121.86314 * 0.02562 * 17 16 15 19 19 C 1.50699 * 119.59230 * 180.02562 * 18 17 16 20 20 Cl 1.80300 * 109.46876 * 269.99724 * 19 18 17 21 21 C 1.37993 * 120.82033 * 359.71189 * 18 17 16 22 22 H 0.97003 * 120.00032 * 359.97438 * 1 2 3 23 23 H 1.09008 * 109.46400 * 304.99893 * 11 9 7 24 24 H 1.09000 * 109.47237 * 64.99569 * 11 9 7 25 25 H 1.08009 * 120.45239 * 0.02562 * 15 14 13 26 26 H 1.08006 * 119.59142 * 179.97438 * 16 15 14 27 27 H 1.08994 * 109.47100 * 29.99091 * 19 18 17 28 28 H 1.08995 * 109.47487 * 149.99621 * 19 18 17 29 29 H 1.08004 * 120.45590 * 180.30975 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2509 -2.4991 0.0005 10 1 0.6240 -2.5567 0.8903 11 6 0.3717 -2.5805 -1.2490 12 17 -0.6388 -4.0719 -1.1768 13 8 2.1795 -3.5853 0.0005 14 6 1.8188 -4.7045 0.6787 15 6 2.6306 -5.8363 0.6722 16 6 2.2286 -6.9541 1.3734 17 7 1.0920 -6.9591 2.0442 18 6 0.2963 -5.9070 2.0743 19 6 -0.9897 -5.9687 2.8573 20 17 -2.3144 -6.5677 1.7909 21 6 0.6304 -4.7486 1.4029 22 1 -0.4850 0.8401 0.0004 23 1 -0.2757 -1.7048 -1.2952 24 1 1.0037 -2.6125 -2.1365 25 1 3.5622 -5.8387 0.1256 26 1 2.8517 -7.8363 1.3735 27 1 -0.8687 -6.6468 3.7020 28 1 -1.2403 -4.9732 3.2236 29 1 -0.0229 -3.8891 1.4356 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001223131200.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:52 Heat of formation + Delta-G solvation = -46.948493 kcal Electronic energy + Delta-G solvation = -16965.881093 eV Core-core repulsion = 13940.148517 eV Total energy + Delta-G solvation = -3025.732577 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 275.022 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.54633 -39.37146 -36.99764 -36.64134 -35.45931 -33.50232 -32.40560 -31.02602 -28.35539 -27.31158 -25.02571 -23.15596 -22.40002 -19.16592 -18.82295 -17.62986 -16.89598 -16.56529 -16.23410 -15.83148 -15.52926 -15.31800 -14.84402 -14.49500 -14.29805 -14.03566 -13.88490 -13.62589 -13.04617 -12.88034 -12.75416 -12.50895 -12.06026 -11.68233 -11.53035 -11.39016 -11.28618 -11.10835 -10.66476 -10.49821 -9.98963 -9.51460 -8.40349 -6.56654 -0.03127 0.44733 1.38899 1.43160 1.45546 1.53343 1.58659 2.21349 2.56075 2.93610 2.96132 3.16831 3.63142 3.94487 4.12678 4.24317 4.32937 4.33973 4.40406 4.56712 4.71609 4.76204 4.98570 5.13361 5.28849 5.51225 5.66724 5.78502 6.38362 6.68727 7.02059 7.15844 8.66171 Molecular weight = 275.02amu Principal moments of inertia in cm(-1) A = 0.021896 B = 0.006132 C = 0.005578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.439236 B = 4565.255951 C = 5018.910556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.030 3.970 3 Si 0.976 3.024 4 H -0.269 1.269 5 H -0.276 1.276 6 H -0.269 1.269 7 C -0.551 4.551 8 H 0.068 0.932 9 C 0.212 3.788 10 H 0.036 0.964 11 C -0.030 4.030 12 Cl -0.218 7.218 13 O -0.319 6.319 14 C 0.164 3.836 15 C -0.215 4.215 16 C 0.133 3.867 17 N -0.512 5.512 18 C 0.129 3.871 19 C 0.026 3.974 20 Cl -0.181 7.181 21 C -0.232 4.232 22 H 0.277 0.723 23 H 0.119 0.881 24 H 0.075 0.925 25 H 0.155 0.845 26 H 0.199 0.801 27 H 0.131 0.869 28 H 0.119 0.881 29 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.739 -8.453 3.355 9.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.172 4.172 3 Si 0.800 3.200 4 H -0.194 1.194 5 H -0.201 1.201 6 H -0.193 1.193 7 C -0.588 4.588 8 H 0.086 0.914 9 C 0.157 3.843 10 H 0.053 0.947 11 C -0.093 4.093 12 Cl -0.192 7.192 13 O -0.230 6.230 14 C 0.110 3.890 15 C -0.236 4.236 16 C -0.024 4.024 17 N -0.226 5.226 18 C -0.007 4.007 19 C -0.037 4.037 20 Cl -0.155 7.155 21 C -0.253 4.253 22 H 0.086 0.914 23 H 0.136 0.864 24 H 0.094 0.906 25 H 0.173 0.827 26 H 0.216 0.784 27 H 0.149 0.851 28 H 0.137 0.863 29 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 0.323 -9.126 3.602 9.816 hybrid contribution 0.166 1.813 -0.733 1.963 sum 0.489 -7.312 2.869 7.870 Atomic orbital electron populations 1.69872 1.07030 1.29107 1.48328 1.25686 0.95912 1.02532 0.93054 0.85256 0.78431 0.77539 0.78768 1.19446 1.20144 1.19334 1.21222 0.94194 0.89198 1.54217 0.91412 1.20364 0.87283 0.82831 0.93866 0.94667 1.25419 0.95251 0.87308 1.01295 1.98657 1.75078 1.46448 1.99006 1.86084 1.46876 1.22520 1.67523 1.19796 0.92642 0.87748 0.88841 1.21799 1.02961 0.92226 1.06570 1.23029 0.91994 0.97343 0.89995 1.67482 1.05765 1.28108 1.21281 1.20811 0.95379 0.88823 0.95660 1.23156 0.82947 1.04715 0.92921 1.98727 1.53940 1.90585 1.72201 1.22091 0.99063 1.01285 1.02905 0.91374 0.86354 0.90619 0.82693 0.78390 0.85103 0.86251 0.85271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -45.96 11.29 21.45 0.24 -45.72 15 2 C 0.03 1.48 5.29 84.66 0.45 1.93 15 3 Si 0.98 39.31 29.54 68.60 2.03 41.34 15 4 H -0.27 -10.54 7.11 99.48 0.71 -9.83 15 5 H -0.28 -10.83 7.11 99.48 0.71 -10.13 15 6 H -0.27 -10.73 7.11 99.48 0.71 -10.02 15 7 C -0.55 -28.11 8.89 25.60 0.23 -27.89 15 8 H 0.07 3.49 7.81 -2.91 -0.02 3.47 15 9 C 0.21 10.07 2.19 29.85 0.07 10.14 15 10 H 0.04 1.79 5.40 -2.39 -0.01 1.78 15 11 C -0.03 -1.34 6.17 71.98 0.44 -0.89 15 12 Cl -0.22 -8.90 25.86 -2.72 -0.07 -8.97 15 13 O -0.32 -14.27 9.74 -90.68 -0.88 -15.16 15 14 C 0.16 6.37 6.00 22.76 0.14 6.50 15 15 C -0.21 -6.72 10.08 22.45 0.23 -6.50 15 16 C 0.13 3.59 11.17 84.60 0.95 4.54 15 17 N -0.51 -15.67 10.27 -184.13 -1.89 -17.56 15 18 C 0.13 4.16 6.15 42.48 0.26 4.42 15 19 C 0.03 0.67 6.94 71.24 0.49 1.16 15 20 Cl -0.18 -5.30 29.13 -2.72 -0.08 -5.38 15 21 C -0.23 -8.64 6.87 22.45 0.15 -8.49 15 22 H 0.28 13.23 8.31 -92.71 -0.77 12.46 15 23 H 0.12 5.75 5.95 -2.38 -0.01 5.73 15 24 H 0.08 3.33 8.14 -2.39 -0.02 3.31 15 25 H 0.16 4.15 8.06 -2.91 -0.02 4.13 15 26 H 0.20 3.56 8.06 -2.91 -0.02 3.54 15 27 H 0.13 2.78 8.14 -2.39 -0.02 2.76 15 28 H 0.12 2.81 8.07 -2.39 -0.02 2.79 15 29 H 0.13 5.26 5.34 -2.91 -0.02 5.25 15 Total: -1.00 -55.23 280.19 3.93 -51.30 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: 1.18 Total: 15.23 kcal Atomic # 6 Polarization: -18.48 SS G_CDS: 3.40 Total: -15.08 kcal Atomic # 7 Polarization: -61.63 SS G_CDS: -1.65 Total: -63.28 kcal Atomic # 8 Polarization: -14.27 SS G_CDS: -0.88 Total: -15.16 kcal Atomic # 14 Polarization: 39.31 SS G_CDS: 2.03 Total: 41.34 kcal Atomic # 17 Polarization: -14.20 SS G_CDS: -0.15 Total: -14.35 kcal Total: -55.23 3.93 -51.30 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223131200.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.351 kcal (2) G-P(sol) polarization free energy of solvation -55.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds