Wall clock time and date at job start Mon Mar 30 2020 01:38:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 5 5 C 1.53005 * 109.46867 * 175.00027 * 4 2 1 6 6 C 1.50697 * 109.46774 * 180.02562 * 5 4 2 7 7 H 1.08004 * 120.00429 * 0.02562 * 6 5 4 8 8 C 1.37879 * 119.99805 * 180.02562 * 6 5 4 9 9 N 1.31520 * 119.99930 * 179.97438 * 8 6 5 10 10 Si 1.86803 * 120.00189 * 359.97438 * 8 6 5 11 11 H 1.48498 * 109.46757 * 90.00257 * 10 8 6 12 12 H 1.48498 * 109.47220 * 210.00166 * 10 8 6 13 13 H 1.48502 * 109.46679 * 330.00220 * 10 8 6 14 14 N 1.46901 * 109.46860 * 120.00150 * 2 1 3 15 15 C 1.46900 * 110.99890 * 274.99873 * 14 2 1 16 16 C 1.52996 * 109.47450 * 180.02562 * 15 14 2 17 17 O 1.42902 * 109.52151 * 300.12613 * 16 15 14 18 18 C 1.53121 * 109.52489 * 180.02562 * 16 15 14 19 19 C 1.53043 * 109.27558 * 182.44109 * 18 16 15 20 20 N 1.46839 * 109.52495 * 59.17778 * 19 18 16 21 21 C 1.46852 * 111.19913 * 298.25206 * 20 19 18 22 22 C 1.53041 * 109.51694 * 61.74407 * 21 20 19 23 23 H 1.09004 * 109.50147 * 180.87469 * 22 21 20 24 24 F 1.39902 * 109.50552 * 60.76620 * 22 21 20 25 25 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 26 26 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 28 28 H 1.08990 * 109.47170 * 295.00238 * 4 2 1 29 29 H 1.09001 * 109.46952 * 55.00315 * 4 2 1 30 30 H 1.09000 * 109.47443 * 300.00098 * 5 4 2 31 31 H 1.09001 * 109.47099 * 60.00379 * 5 4 2 32 32 H 0.97002 * 120.00052 * 179.97438 * 9 8 6 33 33 H 1.00901 * 111.00276 * 151.05158 * 14 2 1 34 34 H 1.09002 * 109.47391 * 300.00224 * 15 14 2 35 35 H 1.09005 * 109.47266 * 59.99895 * 15 14 2 36 36 H 0.96700 * 114.00175 * 59.99713 * 17 16 15 37 37 H 1.09003 * 109.50154 * 302.37603 * 18 16 15 38 38 H 1.08996 * 109.50320 * 62.49773 * 18 16 15 39 39 H 1.08997 * 109.45961 * 179.19204 * 19 18 16 40 40 H 1.09000 * 109.46025 * 299.16013 * 19 18 16 41 41 H 1.00903 * 110.99932 * 174.15953 * 20 19 18 42 42 H 1.08998 * 109.46413 * 181.76022 * 21 20 19 43 43 H 1.08997 * 109.46102 * 301.73463 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5649 -0.6133 -1.3136 6 6 4.0672 -1.3233 -2.5443 7 1 3.3687 -1.8031 -3.2138 8 6 5.4185 -1.3602 -2.8155 9 7 5.8570 -1.9802 -3.8894 10 14 6.6267 -0.5297 -1.6579 11 1 7.0614 -1.4973 -0.6187 12 1 7.8090 -0.0645 -2.4267 13 1 5.9700 0.6330 -1.0081 14 7 2.0196 -0.6925 1.1994 15 6 2.0824 0.2225 2.3469 16 6 2.5961 -0.5328 3.5742 17 8 1.7121 -1.6150 3.8735 18 6 2.6614 0.4198 4.7712 19 6 3.2331 -0.3255 5.9795 20 7 4.5747 -0.8273 5.6567 21 6 4.5308 -1.7807 4.5406 22 6 3.9979 -1.0788 3.2894 23 1 3.9508 -1.7906 2.4651 24 9 4.8498 -0.0231 2.9474 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.7517 -1.7715 -1.2055 29 1 1.6055 -0.2618 -2.1369 30 1 3.8533 0.4369 -1.3572 31 1 3.9995 -1.0728 -0.4258 32 1 6.8076 -2.0059 -4.0804 33 1 2.9173 -1.1205 1.0288 34 1 2.7588 1.0462 2.1183 35 1 1.0870 0.6163 2.5525 36 1 1.6236 -2.2599 3.1584 37 1 3.3041 1.2660 4.5281 38 1 1.6593 0.7787 5.0057 39 1 3.2943 0.3540 6.8295 40 1 2.5825 -1.1633 6.2304 41 1 5.0112 -1.2398 6.4676 42 1 5.5346 -2.1581 4.3456 43 1 3.8741 -2.6116 4.7983 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001246089479.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:47 Heat of formation + Delta-G solvation = -112.473535 kcal Electronic energy + Delta-G solvation = -22997.498249 eV Core-core repulsion = 19605.096699 eV Total energy + Delta-G solvation = -3392.401550 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 274.180 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -47.57570 -39.40922 -37.19949 -35.64819 -33.28332 -32.12604 -31.03397 -30.19466 -29.21309 -26.04027 -24.98473 -23.40049 -21.95258 -21.06095 -19.86810 -19.69469 -17.48327 -17.21687 -16.65941 -15.80325 -15.45046 -15.30618 -15.17955 -14.87136 -14.25452 -14.20423 -14.00503 -13.37985 -13.18147 -12.83238 -12.70275 -12.50052 -12.41935 -12.16445 -11.91228 -11.82552 -11.68002 -11.52576 -11.37332 -11.13697 -10.94678 -10.71765 -10.22390 -10.01725 -9.79183 -9.77334 -9.48376 -9.20383 -8.65508 -8.56246 -8.28882 -6.06275 -4.04666 3.30042 3.38381 3.43636 3.87380 4.03694 4.14636 4.30700 4.39242 4.43877 4.70806 4.82883 4.91191 5.15564 5.19734 5.27145 5.32112 5.40061 5.51205 5.51597 5.58186 5.61317 5.68692 5.75880 5.79109 5.85192 6.04761 6.13847 6.19031 6.32880 6.37681 6.67742 6.73634 6.80046 7.08276 7.15997 7.22985 7.42242 7.53075 7.59172 7.76919 8.51686 8.98764 9.56394 11.06980 Molecular weight = 274.18amu Principal moments of inertia in cm(-1) A = 0.017706 B = 0.006056 C = 0.004848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.997633 B = 4622.054203 C = 5774.703989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.082 3.918 3 H 0.040 0.960 4 C -0.106 4.106 5 C -0.014 4.014 6 C -0.520 4.520 7 H 0.072 0.928 8 C 0.068 3.932 9 N -0.903 5.903 10 Si 0.876 3.124 11 H -0.276 1.276 12 H -0.287 1.287 13 H -0.266 1.266 14 N -0.690 5.690 15 C 0.030 3.970 16 C 0.118 3.882 17 O -0.546 6.546 18 C -0.104 4.104 19 C 0.060 3.940 20 N -0.686 5.686 21 C 0.036 3.964 22 C 0.066 3.934 23 H 0.090 0.910 24 F -0.195 7.195 25 H 0.053 0.947 26 H 0.059 0.941 27 H 0.044 0.956 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.013 0.987 31 H 0.006 0.994 32 H 0.263 0.737 33 H 0.345 0.655 34 H 0.044 0.956 35 H 0.082 0.918 36 H 0.386 0.614 37 H 0.087 0.913 38 H 0.078 0.922 39 H 0.075 0.925 40 H 0.042 0.958 41 H 0.346 0.654 42 H 0.085 0.915 43 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.245 2.696 19.527 21.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.028 4.028 3 H 0.058 0.942 4 C -0.144 4.144 5 C -0.051 4.051 6 C -0.558 4.558 7 H 0.090 0.910 8 C -0.133 4.133 9 N -0.541 5.541 10 Si 0.704 3.296 11 H -0.202 1.202 12 H -0.213 1.213 13 H -0.190 1.190 14 N -0.325 5.325 15 C -0.100 4.100 16 C 0.076 3.924 17 O -0.353 6.353 18 C -0.142 4.142 19 C -0.069 4.069 20 N -0.318 5.318 21 C -0.094 4.094 22 C 0.029 3.971 23 H 0.108 0.892 24 F -0.176 7.176 25 H 0.072 0.928 26 H 0.078 0.922 27 H 0.063 0.937 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.031 0.969 31 H 0.024 0.976 32 H 0.073 0.927 33 H 0.167 0.833 34 H 0.062 0.938 35 H 0.100 0.900 36 H 0.236 0.764 37 H 0.105 0.895 38 H 0.097 0.903 39 H 0.094 0.906 40 H 0.060 0.940 41 H 0.164 0.836 42 H 0.104 0.896 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -7.582 3.283 19.733 21.392 hybrid contribution 1.355 -0.099 0.058 1.360 sum -6.227 3.184 19.790 20.989 Atomic orbital electron populations 1.21768 0.95197 1.01940 1.00401 1.21647 0.94950 0.96132 0.90033 0.94202 1.21675 0.98088 1.00047 0.94621 1.19598 0.91843 0.96648 0.97026 1.21107 0.92913 1.34362 1.07381 0.90967 1.25029 0.98411 0.94840 0.95055 1.69917 1.14633 1.43349 1.26245 0.86833 0.80927 0.80699 0.81173 1.20202 1.21337 1.19034 1.60640 1.33912 1.32927 1.04983 1.22642 1.01521 0.94976 0.90815 1.21665 0.87533 0.88167 0.95037 1.86436 1.65966 1.37390 1.45529 1.21580 1.01877 0.97545 0.93197 1.21868 0.88933 0.98756 0.97343 1.60211 1.21005 1.40476 1.10076 1.22425 1.01944 0.93755 0.91295 1.22298 0.89413 0.87615 0.97761 0.89187 1.92841 1.72040 1.59227 1.93484 0.92786 0.92177 0.93698 0.91842 0.91914 0.96894 0.97603 0.92729 0.83322 0.93811 0.89979 0.76430 0.89476 0.90322 0.90620 0.93991 0.83630 0.89632 0.92622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 9.41 37.16 0.35 -1.48 16 2 C 0.08 1.30 2.65 -67.71 -0.18 1.12 16 3 H 0.04 0.67 7.80 -51.93 -0.40 0.26 16 4 C -0.11 -2.05 4.74 -26.73 -0.13 -2.18 16 5 C -0.01 -0.32 3.87 -27.88 -0.11 -0.43 16 6 C -0.52 -14.77 9.66 -34.44 -0.33 -15.10 16 7 H 0.07 2.20 7.99 -52.48 -0.42 1.78 16 8 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 9 N -0.90 -27.94 13.96 55.43 0.77 -27.16 16 10 Si 0.88 22.13 27.47 -169.99 -4.67 17.46 16 11 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 13 H -0.27 -6.57 6.54 56.52 0.37 -6.20 16 14 N -0.69 -10.13 5.71 -106.72 -0.61 -10.74 16 15 C 0.03 0.40 4.56 -3.83 -0.02 0.39 16 16 C 0.12 1.43 0.65 -90.50 -0.06 1.37 16 17 O -0.55 -6.36 11.84 -35.23 -0.42 -6.77 16 18 C -0.10 -1.14 4.98 -26.65 -0.13 -1.28 16 19 C 0.06 0.60 6.42 -3.84 -0.02 0.57 16 20 N -0.69 -7.23 6.78 -113.82 -0.77 -8.01 16 21 C 0.04 0.40 6.17 -3.83 -0.02 0.38 16 22 C 0.07 0.88 2.91 -26.65 -0.08 0.80 16 23 H 0.09 1.20 6.71 -51.93 -0.35 0.85 16 24 F -0.20 -3.23 16.01 2.25 0.04 -3.20 16 25 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.04 0.56 7.45 -51.93 -0.39 0.17 16 28 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 29 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 30 H 0.01 0.31 7.20 -51.93 -0.37 -0.06 16 31 H 0.01 0.14 5.85 -51.93 -0.30 -0.17 16 32 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 33 H 0.35 5.61 4.58 -39.29 -0.18 5.43 16 34 H 0.04 0.65 7.65 -51.93 -0.40 0.25 16 35 H 0.08 1.04 7.44 -51.93 -0.39 0.66 16 36 H 0.39 4.04 8.50 45.56 0.39 4.42 16 37 H 0.09 1.03 7.91 -51.93 -0.41 0.62 16 38 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.04 0.43 7.76 -51.93 -0.40 0.02 16 41 H 0.35 2.86 8.90 -39.29 -0.35 2.51 16 42 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.06 0.57 7.76 -51.93 -0.40 0.17 16 LS Contribution 332.83 15.07 5.02 5.02 Total: -1.00 -31.25 332.83 -7.98 -39.22 By element: Atomic # 1 Polarization: 14.63 SS G_CDS: -6.51 Total: 8.13 kcal Atomic # 6 Polarization: -13.12 SS G_CDS: -0.83 Total: -13.95 kcal Atomic # 7 Polarization: -45.30 SS G_CDS: -0.61 Total: -45.91 kcal Atomic # 8 Polarization: -6.36 SS G_CDS: -0.42 Total: -6.77 kcal Atomic # 9 Polarization: -3.23 SS G_CDS: 0.04 Total: -3.20 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -4.67 Total: 17.46 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -31.25 -7.98 -39.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246089479.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.250 kcal (2) G-P(sol) polarization free energy of solvation -31.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds