Wall clock time and date at job start Mon Mar 30 2020 01:38:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 5 5 C 1.53005 * 109.46867 * 175.00027 * 4 2 1 6 6 C 1.50697 * 109.46774 * 180.02562 * 5 4 2 7 7 H 1.08004 * 120.00429 * 0.02562 * 6 5 4 8 8 C 1.37879 * 119.99805 * 180.02562 * 6 5 4 9 9 N 1.31520 * 119.99930 * 179.97438 * 8 6 5 10 10 Si 1.86803 * 120.00189 * 359.97438 * 8 6 5 11 11 H 1.48498 * 109.46757 * 90.00257 * 10 8 6 12 12 H 1.48498 * 109.47220 * 210.00166 * 10 8 6 13 13 H 1.48502 * 109.46679 * 330.00220 * 10 8 6 14 14 N 1.46901 * 109.46860 * 120.00150 * 2 1 3 15 15 C 1.46900 * 110.99890 * 274.99873 * 14 2 1 16 16 C 1.52996 * 109.47450 * 180.02562 * 15 14 2 17 17 O 1.42902 * 109.52151 * 300.12613 * 16 15 14 18 18 C 1.53121 * 109.52489 * 180.02562 * 16 15 14 19 19 C 1.53043 * 109.27558 * 182.44109 * 18 16 15 20 20 N 1.46839 * 109.52495 * 59.17778 * 19 18 16 21 21 C 1.46852 * 111.19913 * 298.25206 * 20 19 18 22 22 C 1.53041 * 109.51694 * 61.74407 * 21 20 19 23 23 H 1.09004 * 109.50147 * 180.87469 * 22 21 20 24 24 F 1.39902 * 109.50552 * 60.76620 * 22 21 20 25 25 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 26 26 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 28 28 H 1.08990 * 109.47170 * 295.00238 * 4 2 1 29 29 H 1.09001 * 109.46952 * 55.00315 * 4 2 1 30 30 H 1.09000 * 109.47443 * 300.00098 * 5 4 2 31 31 H 1.09001 * 109.47099 * 60.00379 * 5 4 2 32 32 H 0.97002 * 120.00052 * 179.97438 * 9 8 6 33 33 H 1.00901 * 111.00276 * 151.05158 * 14 2 1 34 34 H 1.09002 * 109.47391 * 300.00224 * 15 14 2 35 35 H 1.09005 * 109.47266 * 59.99895 * 15 14 2 36 36 H 0.96700 * 114.00175 * 59.99713 * 17 16 15 37 37 H 1.09003 * 109.50154 * 302.37603 * 18 16 15 38 38 H 1.08996 * 109.50320 * 62.49773 * 18 16 15 39 39 H 1.08997 * 109.45961 * 179.19204 * 19 18 16 40 40 H 1.09000 * 109.46025 * 299.16013 * 19 18 16 41 41 H 1.00903 * 110.99932 * 174.15953 * 20 19 18 42 42 H 1.08998 * 109.46413 * 181.76022 * 21 20 19 43 43 H 1.08997 * 109.46102 * 301.73463 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5649 -0.6133 -1.3136 6 6 4.0672 -1.3233 -2.5443 7 1 3.3687 -1.8031 -3.2138 8 6 5.4185 -1.3602 -2.8155 9 7 5.8570 -1.9802 -3.8894 10 14 6.6267 -0.5297 -1.6579 11 1 7.0614 -1.4973 -0.6187 12 1 7.8090 -0.0645 -2.4267 13 1 5.9700 0.6330 -1.0081 14 7 2.0196 -0.6925 1.1994 15 6 2.0824 0.2225 2.3469 16 6 2.5961 -0.5328 3.5742 17 8 1.7121 -1.6150 3.8735 18 6 2.6614 0.4198 4.7712 19 6 3.2331 -0.3255 5.9795 20 7 4.5747 -0.8273 5.6567 21 6 4.5308 -1.7807 4.5406 22 6 3.9979 -1.0788 3.2894 23 1 3.9508 -1.7906 2.4651 24 9 4.8498 -0.0231 2.9474 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.7517 -1.7715 -1.2055 29 1 1.6055 -0.2618 -2.1369 30 1 3.8533 0.4369 -1.3572 31 1 3.9995 -1.0728 -0.4258 32 1 6.8076 -2.0059 -4.0804 33 1 2.9173 -1.1205 1.0288 34 1 2.7588 1.0462 2.1183 35 1 1.0870 0.6163 2.5525 36 1 1.6236 -2.2599 3.1584 37 1 3.3041 1.2660 4.5281 38 1 1.6593 0.7787 5.0057 39 1 3.2943 0.3540 6.8295 40 1 2.5825 -1.1633 6.2304 41 1 5.0112 -1.2398 6.4676 42 1 5.5346 -2.1581 4.3456 43 1 3.8741 -2.6116 4.7983 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001246089479.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:46 Heat of formation + Delta-G solvation = -137.241014 kcal Electronic energy + Delta-G solvation = -22998.572247 eV Core-core repulsion = 19605.096699 eV Total energy + Delta-G solvation = -3393.475548 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 274.180 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -48.72287 -40.37243 -38.43837 -36.59457 -35.19625 -33.53769 -32.15293 -31.52283 -30.36554 -27.41462 -26.45092 -24.29602 -23.15629 -22.58532 -21.16920 -20.76790 -19.03380 -18.39607 -18.02173 -16.87563 -16.67962 -16.45829 -16.31974 -16.18226 -15.80489 -15.18635 -15.01279 -14.96423 -14.45613 -14.32909 -14.10871 -13.78788 -13.51770 -13.25440 -13.20902 -13.05168 -12.90751 -12.85211 -12.56331 -12.44111 -12.15851 -12.00095 -11.89044 -11.59753 -11.44230 -11.30606 -11.04442 -10.80980 -10.74749 -9.50626 -9.43090 -8.33339 -6.36569 1.29942 1.32651 1.43294 2.30313 2.95964 3.02130 3.09566 3.19782 3.35610 3.45208 3.75910 3.81526 3.99023 4.02123 4.24122 4.29099 4.36900 4.39425 4.50461 4.61592 4.62656 4.68554 4.70159 4.77736 4.83406 4.87318 4.97255 5.00169 5.02186 5.09217 5.25238 5.39884 5.46874 5.50885 5.63120 5.93918 6.03539 6.24863 6.26892 6.42146 6.69407 6.71700 7.28100 8.83436 Molecular weight = 274.18amu Principal moments of inertia in cm(-1) A = 0.017706 B = 0.006056 C = 0.004848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.997633 B = 4622.054203 C = 5774.703989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.087 3.913 3 H 0.034 0.966 4 C -0.098 4.098 5 C -0.008 4.008 6 C -0.529 4.529 7 H 0.035 0.965 8 C 0.011 3.989 9 N -0.948 5.948 10 Si 0.942 3.058 11 H -0.264 1.264 12 H -0.283 1.283 13 H -0.256 1.256 14 N -0.683 5.683 15 C 0.034 3.966 16 C 0.127 3.873 17 O -0.545 6.545 18 C -0.105 4.105 19 C 0.063 3.937 20 N -0.696 5.696 21 C 0.039 3.961 22 C 0.055 3.945 23 H 0.085 0.915 24 F -0.216 7.216 25 H 0.060 0.940 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.057 0.943 30 H 0.008 0.992 31 H 0.015 0.985 32 H 0.266 0.734 33 H 0.335 0.665 34 H 0.029 0.971 35 H 0.093 0.907 36 H 0.391 0.609 37 H 0.076 0.924 38 H 0.091 0.909 39 H 0.093 0.907 40 H 0.042 0.958 41 H 0.359 0.641 42 H 0.086 0.914 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.805 3.389 22.043 23.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.022 4.022 3 H 0.052 0.948 4 C -0.136 4.136 5 C -0.046 4.046 6 C -0.567 4.567 7 H 0.054 0.946 8 C -0.186 4.186 9 N -0.589 5.589 10 Si 0.766 3.234 11 H -0.189 1.189 12 H -0.208 1.208 13 H -0.180 1.180 14 N -0.317 5.317 15 C -0.096 4.096 16 C 0.084 3.916 17 O -0.352 6.352 18 C -0.144 4.144 19 C -0.066 4.066 20 N -0.329 5.329 21 C -0.091 4.091 22 C 0.018 3.982 23 H 0.103 0.897 24 F -0.197 7.197 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.026 0.974 31 H 0.033 0.967 32 H 0.075 0.925 33 H 0.156 0.844 34 H 0.047 0.953 35 H 0.111 0.889 36 H 0.242 0.758 37 H 0.095 0.905 38 H 0.109 0.891 39 H 0.111 0.889 40 H 0.060 0.940 41 H 0.178 0.822 42 H 0.104 0.896 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -8.163 3.974 22.267 24.046 hybrid contribution 1.481 -0.359 -0.791 1.717 sum -6.682 3.615 21.475 22.780 Atomic orbital electron populations 1.21693 0.92878 1.02387 1.01559 1.21553 0.96693 0.95152 0.88799 0.94780 1.21541 0.95214 1.00348 0.96530 1.19515 0.94736 0.95395 0.94906 1.21465 0.92597 1.34129 1.08505 0.94616 1.25903 1.00482 0.95559 0.96663 1.70054 1.15302 1.45170 1.28336 0.85788 0.78443 0.80026 0.79176 1.18942 1.20840 1.18034 1.60698 1.33138 1.32979 1.04883 1.22676 1.01807 0.94412 0.90703 1.21556 0.86807 0.88294 0.94911 1.86436 1.65648 1.37343 1.45801 1.21614 1.02527 0.97049 0.93169 1.21881 0.88489 0.98941 0.97297 1.60189 1.21606 1.40584 1.10549 1.22364 1.02114 0.93884 0.90725 1.22541 0.89901 0.87117 0.98668 0.89685 1.92792 1.72834 1.60288 1.93764 0.92099 0.92073 0.92104 0.92271 0.92389 0.97394 0.96703 0.92459 0.84423 0.95291 0.88878 0.75845 0.90519 0.89066 0.88850 0.93976 0.82151 0.89602 0.91538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.13 9.41 71.98 0.68 -2.45 16 2 C 0.09 2.65 2.65 44.92 0.12 2.77 16 3 H 0.03 1.09 7.80 -2.39 -0.02 1.07 16 4 C -0.10 -3.76 4.74 30.60 0.15 -3.61 16 5 C -0.01 -0.37 3.87 29.85 0.12 -0.26 16 6 C -0.53 -30.67 9.66 25.60 0.25 -30.42 16 7 H 0.04 2.27 7.99 -2.91 -0.02 2.24 16 8 C 0.01 0.66 5.47 84.65 0.46 1.12 16 9 N -0.95 -59.89 13.96 21.45 0.30 -59.59 16 10 Si 0.94 45.62 27.47 68.60 1.88 47.51 16 11 H -0.26 -12.26 7.11 99.48 0.71 -11.55 16 12 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 13 H -0.26 -11.93 6.54 99.48 0.65 -11.28 16 14 N -0.68 -18.98 5.71 -491.56 -2.81 -21.79 16 15 C 0.03 0.84 4.56 86.30 0.39 1.23 16 16 C 0.13 2.81 0.65 -10.72 -0.01 2.81 16 17 O -0.54 -11.36 11.84 -148.98 -1.76 -13.12 16 18 C -0.11 -2.08 4.98 30.65 0.15 -1.93 16 19 C 0.06 1.08 6.42 86.33 0.55 1.63 16 20 N -0.70 -13.13 6.78 -514.01 -3.49 -16.62 16 21 C 0.04 0.80 6.17 86.33 0.53 1.34 16 22 C 0.05 1.38 2.91 30.65 0.09 1.47 16 23 H 0.09 2.18 6.71 -2.39 -0.02 2.16 16 24 F -0.22 -6.92 16.01 44.97 0.72 -6.20 16 25 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 26 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 27 H 0.06 1.32 7.45 -2.39 -0.02 1.30 16 28 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 29 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 30 H 0.01 0.37 7.20 -2.39 -0.02 0.35 16 31 H 0.01 0.67 5.85 -2.39 -0.01 0.66 16 32 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 33 H 0.34 10.52 4.58 -89.69 -0.41 10.11 16 34 H 0.03 0.82 7.65 -2.39 -0.02 0.80 16 35 H 0.09 2.11 7.44 -2.38 -0.02 2.09 16 36 H 0.39 7.33 8.50 -74.06 -0.63 6.70 16 37 H 0.08 1.69 7.91 -2.39 -0.02 1.67 16 38 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.04 0.73 7.76 -2.39 -0.02 0.72 16 41 H 0.36 5.09 8.90 -89.69 -0.80 4.29 16 42 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 43 H 0.07 1.21 7.76 -2.39 -0.02 1.20 16 Total: -1.00 -66.94 332.83 -2.55 -69.49 By element: Atomic # 1 Polarization: 27.51 SS G_CDS: -0.88 Total: 26.63 kcal Atomic # 6 Polarization: -29.80 SS G_CDS: 3.48 Total: -26.31 kcal Atomic # 7 Polarization: -92.00 SS G_CDS: -5.99 Total: -98.00 kcal Atomic # 8 Polarization: -11.36 SS G_CDS: -1.76 Total: -13.12 kcal Atomic # 9 Polarization: -6.92 SS G_CDS: 0.72 Total: -6.20 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 1.88 Total: 47.51 kcal Total: -66.94 -2.55 -69.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246089479.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.749 kcal (2) G-P(sol) polarization free energy of solvation -66.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds