Wall clock time and date at job start Mon Mar 30 2020 01:22:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46963 * 110.99998 * 2 1 4 4 C 1.53049 * 109.36172 * 183.18786 * 3 2 1 5 5 N 1.46953 * 109.36301 * 301.59585 * 4 3 2 6 6 C 1.39684 * 110.99727 * 183.18829 * 5 4 3 7 7 C 1.38914 * 120.07328 * 180.02562 * 6 5 4 8 8 C 1.38098 * 119.92458 * 179.97438 * 7 6 5 9 9 C 1.38286 * 120.07639 * 0.02562 * 8 7 6 10 10 C 1.50699 * 119.92681 * 179.97438 * 9 8 7 11 11 C 1.53006 * 109.46866 * 89.99675 * 10 9 8 12 12 C 1.50699 * 109.46866 * 179.97438 * 11 10 9 13 13 H 1.08003 * 119.99962 * 359.97438 * 12 11 10 14 14 C 1.37874 * 120.00270 * 180.02562 * 12 11 10 15 15 N 1.31522 * 119.99834 * 359.97438 * 14 12 11 16 16 Si 1.86793 * 120.00496 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47574 * 89.99780 * 16 14 12 18 18 H 1.48500 * 109.47346 * 209.99892 * 16 14 12 19 19 H 1.48499 * 109.47067 * 329.99541 * 16 14 12 20 20 C 1.38291 * 120.14745 * 0.27021 * 9 8 7 21 21 C 1.38105 * 120.07502 * 359.44997 * 20 9 8 22 22 C 1.46957 * 110.88246 * 59.32734 * 5 4 3 23 23 C 1.46953 * 110.99681 * 123.79694 * 2 1 3 24 24 H 1.09000 * 109.47131 * 59.99887 * 1 2 3 25 25 H 1.08998 * 109.47373 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47411 * 300.00105 * 1 2 3 27 27 H 1.08998 * 109.48817 * 63.21594 * 3 2 1 28 28 H 1.08997 * 109.49973 * 303.16367 * 3 2 1 29 29 H 1.08997 * 109.48560 * 181.63093 * 4 3 2 30 30 H 1.09003 * 109.50819 * 61.57610 * 4 3 2 31 31 H 1.08004 * 120.03664 * 0.02562 * 7 6 5 32 32 H 1.07998 * 119.96456 * 180.02562 * 8 7 6 33 33 H 1.09000 * 109.47247 * 329.99844 * 10 9 8 34 34 H 1.09001 * 109.47358 * 209.99270 * 10 9 8 35 35 H 1.08993 * 109.46955 * 300.00219 * 11 10 9 36 36 H 1.09000 * 109.47050 * 60.00048 * 11 10 9 37 37 H 0.96992 * 120.00032 * 180.02562 * 15 14 12 38 38 H 1.08002 * 119.96182 * 179.71254 * 20 9 8 39 39 H 1.07997 * 120.03902 * 180.26789 * 21 20 9 40 40 H 1.08998 * 109.49222 * 60.64142 * 22 5 4 41 41 H 1.08997 * 109.48838 * 180.70995 * 22 5 4 42 42 H 1.09000 * 109.49348 * 296.77782 * 23 2 1 43 43 H 1.08997 * 109.48946 * 56.84701 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3720 0.0000 4 6 3.5234 1.3291 -0.0803 5 7 4.0500 0.5659 1.0598 6 6 5.4468 0.5659 1.0598 7 6 6.1429 -0.1033 2.0585 8 6 7.5239 -0.1018 2.0552 9 6 8.2138 0.5653 1.0595 10 6 9.7208 0.5652 1.0595 11 6 10.2307 -0.6333 0.2567 12 6 11.7377 -0.6330 0.2561 13 1 12.2777 0.1445 0.7760 14 6 12.4271 -1.6247 -0.4089 15 7 11.7694 -2.5712 -1.0425 16 14 14.2950 -1.6248 -0.4090 17 1 14.7901 -2.4046 0.7537 18 1 14.7900 -2.2419 -1.6658 19 1 14.7901 -0.2279 -0.3152 20 6 7.5240 1.2375 0.0673 21 6 6.1429 1.2352 0.0613 22 6 3.5234 -0.8061 1.0598 23 6 1.9955 -0.7632 1.1401 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.6937 1.8774 0.9173 28 1 1.6013 1.9131 -0.8601 29 1 3.9177 2.3448 -0.0512 30 1 3.8257 0.8481 -1.0106 31 1 5.6047 -0.6248 2.8362 32 1 8.0657 -0.6221 2.8311 33 1 10.0842 0.4967 2.0849 34 1 10.0842 1.4874 0.6061 35 1 9.8673 -1.5554 0.7101 36 1 9.8674 -0.5648 -0.7687 37 1 12.2544 -3.2690 -1.5101 38 1 8.0658 1.7614 -0.7063 39 1 5.6048 1.7568 -0.7163 40 1 3.8253 -1.3115 0.1425 41 1 3.9177 -1.3469 1.9201 42 1 1.6937 -0.2820 2.0704 43 1 1.6012 -1.7789 1.1111 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250060214.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:02 Heat of formation + Delta-G solvation = 29.666361 kcal Electronic energy + Delta-G solvation = -20579.220500 eV Core-core repulsion = 17623.751823 eV Total energy + Delta-G solvation = -2955.468677 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.31210 -38.36781 -35.79161 -33.55141 -31.66606 -31.64958 -30.27162 -29.28092 -27.23873 -24.82997 -24.35394 -23.71669 -21.70786 -21.52686 -20.33096 -19.52869 -17.41943 -16.33496 -15.65654 -15.44126 -15.34677 -15.16828 -14.67926 -14.48351 -14.39622 -13.90684 -13.48338 -13.27684 -12.68573 -12.64245 -12.55311 -12.43358 -12.04717 -11.90232 -11.56336 -11.41288 -11.29521 -11.05995 -10.93254 -10.86778 -10.54331 -10.48433 -9.77942 -9.68904 -9.19936 -9.05128 -8.66033 -8.54377 -8.32410 -7.41144 -5.97666 -4.00684 1.77554 1.80778 3.33116 3.39283 3.42655 3.59824 3.69610 4.22554 4.47986 4.59290 4.71817 4.82987 5.02968 5.05783 5.19015 5.21455 5.23729 5.29663 5.35152 5.37720 5.50917 5.52982 5.59793 5.65032 5.66926 5.76194 5.85727 5.89363 6.07635 6.24968 6.39720 6.58306 6.66407 6.70510 6.70817 6.80255 6.97458 7.09709 7.17654 7.22609 7.58065 7.70980 7.86098 8.02877 8.43517 9.06630 9.63212 11.13332 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.039640 B = 0.002979 C = 0.002937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.179821 B = 9395.963021 C = 9532.769386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.546 5.546 3 C 0.056 3.944 4 C 0.053 3.947 5 N -0.490 5.490 6 C 0.085 3.915 7 C -0.136 4.136 8 C -0.098 4.098 9 C -0.076 4.076 10 C -0.078 4.078 11 C 0.030 3.970 12 C -0.522 4.522 13 H 0.056 0.944 14 C 0.056 3.944 15 N -0.895 5.895 16 Si 0.892 3.108 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.274 1.274 20 C -0.097 4.097 21 C -0.165 4.165 22 C 0.058 3.942 23 C 0.056 3.944 24 H 0.068 0.932 25 H 0.068 0.932 26 H 0.025 0.975 27 H 0.042 0.958 28 H 0.081 0.919 29 H 0.086 0.914 30 H 0.054 0.946 31 H 0.117 0.883 32 H 0.122 0.878 33 H 0.058 0.942 34 H 0.057 0.943 35 H 0.017 0.983 36 H 0.016 0.984 37 H 0.260 0.740 38 H 0.120 0.880 39 H 0.120 0.880 40 H 0.052 0.948 41 H 0.086 0.914 42 H 0.043 0.957 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.855 6.411 3.613 23.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.271 5.271 3 C -0.072 4.072 4 C -0.075 4.075 5 N -0.207 5.207 6 C -0.011 4.011 7 C -0.156 4.156 8 C -0.116 4.116 9 C -0.077 4.077 10 C -0.116 4.116 11 C -0.007 4.007 12 C -0.560 4.560 13 H 0.074 0.926 14 C -0.145 4.145 15 N -0.534 5.534 16 Si 0.720 3.280 17 H -0.207 1.207 18 H -0.212 1.212 19 H -0.199 1.199 20 C -0.115 4.115 21 C -0.186 4.186 22 C -0.068 4.068 23 C -0.072 4.072 24 H 0.087 0.913 25 H 0.087 0.913 26 H 0.044 0.956 27 H 0.061 0.939 28 H 0.100 0.900 29 H 0.104 0.896 30 H 0.073 0.927 31 H 0.135 0.865 32 H 0.140 0.860 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.035 0.965 36 H 0.035 0.965 37 H 0.070 0.930 38 H 0.138 0.862 39 H 0.137 0.863 40 H 0.071 0.929 41 H 0.105 0.895 42 H 0.061 0.939 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -21.916 6.240 3.501 23.054 hybrid contribution 0.965 -0.064 -0.006 0.967 sum -20.952 6.176 3.494 22.121 Atomic orbital electron populations 1.22342 0.87082 1.02146 1.00677 1.62157 1.07896 1.14045 1.43034 1.22206 0.94501 0.89305 1.01170 1.22310 0.93922 0.99040 0.92196 1.59372 1.05597 1.13988 1.41711 1.18724 0.87224 0.99646 0.95519 1.20656 0.94043 1.02385 0.98514 1.20946 0.93233 0.98712 0.98748 1.20315 0.97514 0.95728 0.94122 1.20802 0.88038 1.01436 1.01278 1.19068 0.95281 0.91544 0.94795 1.21275 0.91786 1.10374 1.32549 0.92620 1.25030 0.98397 0.95596 0.95440 1.69975 1.35375 1.13821 1.34229 0.86600 0.85855 0.78185 0.77400 1.20668 1.21244 1.19869 1.20936 0.93272 0.99099 0.98221 1.21176 0.94764 1.04348 0.98305 1.22301 0.93858 0.88283 1.02333 1.22212 0.94506 0.98621 0.91868 0.91302 0.91298 0.95608 0.93929 0.90032 0.89569 0.92748 0.86508 0.86027 0.92365 0.92395 0.96505 0.96524 0.93014 0.86190 0.86259 0.92948 0.89545 0.93898 0.89974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.60 60.06 0.58 0.76 16 2 N -0.55 -5.25 4.97 -242.75 -1.21 -6.45 16 3 C 0.06 0.52 5.62 -3.76 -0.02 0.50 16 4 C 0.05 0.58 4.30 -3.77 -0.02 0.56 16 5 N -0.49 -6.21 4.76 -170.95 -0.81 -7.03 16 6 C 0.09 1.27 5.64 -83.78 -0.47 0.79 16 7 C -0.14 -2.08 9.19 -39.38 -0.36 -2.44 16 8 C -0.10 -1.68 9.69 -39.62 -0.38 -2.06 16 9 C -0.08 -1.43 5.14 -104.59 -0.54 -1.96 16 10 C -0.08 -1.65 5.28 -27.88 -0.15 -1.80 16 11 C 0.03 0.79 4.96 -27.88 -0.14 0.65 16 12 C -0.52 -14.89 9.11 -34.44 -0.31 -15.21 16 13 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 14 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 15 N -0.89 -27.25 13.29 55.43 0.74 -26.51 16 16 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16 17 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 18 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 19 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 20 C -0.10 -1.66 9.69 -39.61 -0.38 -2.05 16 21 C -0.17 -2.52 8.82 -39.38 -0.35 -2.87 16 22 C 0.06 0.67 5.38 -3.76 -0.02 0.64 16 23 C 0.06 0.53 5.62 -3.76 -0.02 0.51 16 24 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.07 0.45 8.13 -51.93 -0.42 0.03 16 26 H 0.03 0.18 8.14 -51.93 -0.42 -0.25 16 27 H 0.04 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.09 0.89 7.17 -51.93 -0.37 0.52 16 30 H 0.05 0.64 7.58 -51.93 -0.39 0.25 16 31 H 0.12 1.55 7.18 -52.48 -0.38 1.17 16 32 H 0.12 1.97 8.06 -52.49 -0.42 1.54 16 33 H 0.06 1.19 8.08 -51.93 -0.42 0.77 16 34 H 0.06 1.18 8.08 -51.93 -0.42 0.77 16 35 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 38 H 0.12 1.96 8.06 -52.49 -0.42 1.53 16 39 H 0.12 1.55 5.81 -52.49 -0.31 1.25 16 40 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.09 0.93 6.82 -51.93 -0.35 0.58 16 42 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.08 0.67 8.13 -51.93 -0.42 0.25 16 LS Contribution 341.64 15.07 5.15 5.15 Total: -1.00 -31.22 341.64 -11.09 -42.31 By element: Atomic # 1 Polarization: 5.42 SS G_CDS: -7.26 Total: -1.83 kcal Atomic # 6 Polarization: -19.73 SS G_CDS: -2.68 Total: -22.41 kcal Atomic # 7 Polarization: -38.71 SS G_CDS: -1.28 Total: -39.99 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.22 -11.09 -42.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250060214.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.976 kcal (2) G-P(sol) polarization free energy of solvation -31.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.310 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds