Wall clock time and date at job start Mon Mar 30 2020 01:22:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46963 * 110.99998 * 2 1 4 4 C 1.53049 * 109.36172 * 183.18786 * 3 2 1 5 5 N 1.46953 * 109.36301 * 301.59585 * 4 3 2 6 6 C 1.39684 * 110.99727 * 183.18829 * 5 4 3 7 7 C 1.38914 * 120.07328 * 180.02562 * 6 5 4 8 8 C 1.38098 * 119.92458 * 179.97438 * 7 6 5 9 9 C 1.38286 * 120.07639 * 0.02562 * 8 7 6 10 10 C 1.50699 * 119.92681 * 179.97438 * 9 8 7 11 11 C 1.53006 * 109.46866 * 89.99675 * 10 9 8 12 12 C 1.50699 * 109.46866 * 179.97438 * 11 10 9 13 13 H 1.08003 * 119.99962 * 359.97438 * 12 11 10 14 14 C 1.37874 * 120.00270 * 180.02562 * 12 11 10 15 15 N 1.31522 * 119.99834 * 359.97438 * 14 12 11 16 16 Si 1.86793 * 120.00496 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47574 * 89.99780 * 16 14 12 18 18 H 1.48500 * 109.47346 * 209.99892 * 16 14 12 19 19 H 1.48499 * 109.47067 * 329.99541 * 16 14 12 20 20 C 1.38291 * 120.14745 * 0.27021 * 9 8 7 21 21 C 1.38105 * 120.07502 * 359.44997 * 20 9 8 22 22 C 1.46957 * 110.88246 * 59.32734 * 5 4 3 23 23 C 1.46953 * 110.99681 * 123.79694 * 2 1 3 24 24 H 1.09000 * 109.47131 * 59.99887 * 1 2 3 25 25 H 1.08998 * 109.47373 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47411 * 300.00105 * 1 2 3 27 27 H 1.08998 * 109.48817 * 63.21594 * 3 2 1 28 28 H 1.08997 * 109.49973 * 303.16367 * 3 2 1 29 29 H 1.08997 * 109.48560 * 181.63093 * 4 3 2 30 30 H 1.09003 * 109.50819 * 61.57610 * 4 3 2 31 31 H 1.08004 * 120.03664 * 0.02562 * 7 6 5 32 32 H 1.07998 * 119.96456 * 180.02562 * 8 7 6 33 33 H 1.09000 * 109.47247 * 329.99844 * 10 9 8 34 34 H 1.09001 * 109.47358 * 209.99270 * 10 9 8 35 35 H 1.08993 * 109.46955 * 300.00219 * 11 10 9 36 36 H 1.09000 * 109.47050 * 60.00048 * 11 10 9 37 37 H 0.96992 * 120.00032 * 180.02562 * 15 14 12 38 38 H 1.08002 * 119.96182 * 179.71254 * 20 9 8 39 39 H 1.07997 * 120.03902 * 180.26789 * 21 20 9 40 40 H 1.08998 * 109.49222 * 60.64142 * 22 5 4 41 41 H 1.08997 * 109.48838 * 180.70995 * 22 5 4 42 42 H 1.09000 * 109.49348 * 296.77782 * 23 2 1 43 43 H 1.08997 * 109.48946 * 56.84701 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3720 0.0000 4 6 3.5234 1.3291 -0.0803 5 7 4.0500 0.5659 1.0598 6 6 5.4468 0.5659 1.0598 7 6 6.1429 -0.1033 2.0585 8 6 7.5239 -0.1018 2.0552 9 6 8.2138 0.5653 1.0595 10 6 9.7208 0.5652 1.0595 11 6 10.2307 -0.6333 0.2567 12 6 11.7377 -0.6330 0.2561 13 1 12.2777 0.1445 0.7760 14 6 12.4271 -1.6247 -0.4089 15 7 11.7694 -2.5712 -1.0425 16 14 14.2950 -1.6248 -0.4090 17 1 14.7901 -2.4046 0.7537 18 1 14.7900 -2.2419 -1.6658 19 1 14.7901 -0.2279 -0.3152 20 6 7.5240 1.2375 0.0673 21 6 6.1429 1.2352 0.0613 22 6 3.5234 -0.8061 1.0598 23 6 1.9955 -0.7632 1.1401 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.6937 1.8774 0.9173 28 1 1.6013 1.9131 -0.8601 29 1 3.9177 2.3448 -0.0512 30 1 3.8257 0.8481 -1.0106 31 1 5.6047 -0.6248 2.8362 32 1 8.0657 -0.6221 2.8311 33 1 10.0842 0.4967 2.0849 34 1 10.0842 1.4874 0.6061 35 1 9.8673 -1.5554 0.7101 36 1 9.8674 -0.5648 -0.7687 37 1 12.2544 -3.2690 -1.5101 38 1 8.0658 1.7614 -0.7063 39 1 5.6048 1.7568 -0.7163 40 1 3.8253 -1.3115 0.1425 41 1 3.9177 -1.3469 1.9201 42 1 1.6937 -0.2820 2.0704 43 1 1.6012 -1.7789 1.1111 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250060214.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:02 Heat of formation + Delta-G solvation = 10.825047 kcal Electronic energy + Delta-G solvation = -20580.037520 eV Core-core repulsion = 17623.751823 eV Total energy + Delta-G solvation = -2956.285697 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.35910 -39.44031 -36.90282 -35.43706 -33.41055 -32.61558 -31.39205 -30.58102 -28.54958 -26.38611 -25.29690 -24.77300 -23.18012 -22.84053 -21.62133 -20.63003 -18.62959 -18.35863 -16.76323 -16.53549 -16.37454 -16.23379 -16.00536 -15.67451 -15.46795 -15.05028 -14.79674 -14.49746 -14.36370 -14.14081 -13.76274 -13.44166 -13.24668 -13.12354 -12.84468 -12.69462 -12.56466 -12.36274 -12.26445 -12.15533 -11.92510 -11.82071 -11.57396 -11.49741 -11.15516 -10.55937 -10.47172 -9.81937 -9.35582 -8.66191 -8.19014 -6.31757 0.47537 0.52260 1.40093 1.41765 1.52993 2.40928 2.62476 2.93845 2.98280 3.13025 3.76987 3.89466 3.99414 4.07619 4.14075 4.16914 4.23423 4.32150 4.46227 4.49929 4.57305 4.61124 4.64957 4.70259 4.75422 4.81152 4.83571 4.88960 4.92618 5.00092 5.03429 5.15898 5.18180 5.31012 5.46725 5.50380 5.60570 5.79388 5.85852 5.94262 5.95754 6.05546 6.07854 6.23375 6.37284 6.85425 7.37651 8.92120 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.039640 B = 0.002979 C = 0.002937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.179821 B = 9395.963021 C = 9532.769386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.562 5.562 3 C 0.061 3.939 4 C 0.050 3.950 5 N -0.491 5.491 6 C 0.092 3.908 7 C -0.137 4.137 8 C -0.106 4.106 9 C -0.106 4.106 10 C -0.063 4.063 11 C 0.038 3.962 12 C -0.544 4.544 13 H 0.063 0.937 14 C -0.002 4.002 15 N -0.934 5.934 16 Si 0.967 3.033 17 H -0.271 1.271 18 H -0.282 1.282 19 H -0.262 1.262 20 C -0.106 4.106 21 C -0.167 4.167 22 C 0.057 3.943 23 C 0.062 3.938 24 H 0.077 0.923 25 H 0.075 0.925 26 H 0.030 0.970 27 H 0.042 0.958 28 H 0.098 0.902 29 H 0.093 0.907 30 H 0.045 0.955 31 H 0.139 0.861 32 H 0.125 0.875 33 H 0.062 0.938 34 H 0.060 0.940 35 H -0.012 1.012 36 H -0.013 1.013 37 H 0.263 0.737 38 H 0.122 0.878 39 H 0.142 0.858 40 H 0.036 0.964 41 H 0.091 0.909 42 H 0.044 0.956 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.970 7.100 4.019 24.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.287 5.287 3 C -0.067 4.067 4 C -0.077 4.077 5 N -0.207 5.207 6 C -0.005 4.005 7 C -0.157 4.157 8 C -0.124 4.124 9 C -0.107 4.107 10 C -0.100 4.100 11 C 0.001 3.999 12 C -0.582 4.582 13 H 0.081 0.919 14 C -0.199 4.199 15 N -0.575 5.575 16 Si 0.791 3.209 17 H -0.197 1.197 18 H -0.208 1.208 19 H -0.186 1.186 20 C -0.124 4.124 21 C -0.188 4.188 22 C -0.069 4.069 23 C -0.067 4.067 24 H 0.095 0.905 25 H 0.094 0.906 26 H 0.048 0.952 27 H 0.061 0.939 28 H 0.117 0.883 29 H 0.111 0.889 30 H 0.064 0.936 31 H 0.157 0.843 32 H 0.143 0.857 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.007 0.993 36 H 0.006 0.994 37 H 0.072 0.928 38 H 0.140 0.860 39 H 0.160 0.840 40 H 0.055 0.945 41 H 0.109 0.891 42 H 0.063 0.937 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -23.056 6.942 3.916 24.395 hybrid contribution 1.168 -0.285 -0.145 1.211 sum -21.888 6.656 3.770 23.187 Atomic orbital electron populations 1.22382 0.85531 1.02881 1.01305 1.62178 1.09379 1.14106 1.43064 1.22186 0.93062 0.89520 1.01936 1.22409 0.95335 0.98947 0.91048 1.59400 1.04082 1.14838 1.42391 1.18950 0.88549 0.98257 0.94740 1.20860 0.93363 1.02336 0.99190 1.21057 0.94242 0.98583 0.98566 1.20166 0.96086 0.98342 0.96099 1.20518 0.90141 0.99005 1.00366 1.18902 0.94634 0.92664 0.93685 1.21726 0.93075 1.10712 1.32670 0.91920 1.26018 1.04068 0.95033 0.94813 1.70118 1.37666 1.14616 1.35060 0.85422 0.79001 0.78800 0.77677 1.19676 1.20756 1.18608 1.21052 0.94319 0.99153 0.97924 1.21400 0.94030 1.04388 0.98943 1.22360 0.95429 0.87319 1.01750 1.22175 0.92876 0.99584 0.92026 0.90453 0.90579 0.95155 0.93946 0.88347 0.88873 0.93633 0.84340 0.85722 0.91978 0.92087 0.99328 0.99438 0.92780 0.85993 0.84027 0.94534 0.89057 0.93731 0.88557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 9.60 127.69 1.23 1.54 16 2 N -0.56 -9.50 4.97 -921.94 -4.58 -14.08 16 3 C 0.06 0.99 5.62 86.31 0.49 1.48 16 4 C 0.05 1.00 4.30 86.31 0.37 1.37 16 5 N -0.49 -11.63 4.76 -694.77 -3.30 -14.93 16 6 C 0.09 2.64 5.64 38.21 0.22 2.85 16 7 C -0.14 -4.09 9.19 22.40 0.21 -3.88 16 8 C -0.11 -3.66 9.69 22.25 0.22 -3.44 16 9 C -0.11 -4.07 5.14 -19.84 -0.10 -4.17 16 10 C -0.06 -2.74 5.28 29.85 0.16 -2.58 16 11 C 0.04 2.10 4.96 29.85 0.15 2.25 16 12 C -0.54 -31.67 9.11 25.60 0.23 -31.44 16 13 H 0.06 3.47 7.74 -2.91 -0.02 3.45 16 14 C 0.00 -0.10 5.46 84.65 0.46 0.36 16 15 N -0.93 -58.20 13.29 21.45 0.28 -57.92 16 16 Si 0.97 44.88 29.54 68.60 2.03 46.91 16 17 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 18 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 19 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 20 C -0.11 -3.68 9.69 22.25 0.22 -3.46 16 21 C -0.17 -4.97 8.82 22.40 0.20 -4.77 16 22 C 0.06 1.22 5.38 86.31 0.46 1.68 16 23 C 0.06 1.04 5.62 86.31 0.49 1.52 16 24 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 25 H 0.08 0.80 8.13 -2.39 -0.02 0.78 16 26 H 0.03 0.34 8.14 -2.39 -0.02 0.32 16 27 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.09 1.73 7.17 -2.39 -0.02 1.71 16 30 H 0.05 1.01 7.58 -2.39 -0.02 0.99 16 31 H 0.14 3.44 7.18 -2.91 -0.02 3.42 16 32 H 0.12 4.10 8.06 -2.91 -0.02 4.07 16 33 H 0.06 2.59 8.08 -2.39 -0.02 2.57 16 34 H 0.06 2.55 8.08 -2.39 -0.02 2.53 16 35 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 36 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 37 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 38 H 0.12 4.06 8.06 -2.91 -0.02 4.03 16 39 H 0.14 3.49 5.81 -2.91 -0.02 3.47 16 40 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.09 1.83 6.82 -2.39 -0.02 1.81 16 42 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 43 H 0.10 1.35 8.13 -2.39 -0.02 1.33 16 Total: -1.00 -67.57 341.64 0.37 -67.20 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: 0.96 Total: 13.51 kcal Atomic # 6 Polarization: -45.67 SS G_CDS: 4.98 Total: -40.69 kcal Atomic # 7 Polarization: -79.33 SS G_CDS: -7.60 Total: -86.93 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Total: -67.57 0.37 -67.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250060214.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.027 kcal (2) G-P(sol) polarization free energy of solvation -67.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.202 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds