Wall clock time and date at job start Mon Mar 30 2020 01:17:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46504 * 109.46983 * 2 1 4 4 C 1.36933 * 119.99945 * 274.68304 * 3 2 1 5 5 H 1.07998 * 120.00393 * 322.35787 * 4 3 2 6 6 C 1.38813 * 119.99813 * 142.36705 * 4 3 2 7 7 N 1.31622 * 120.00043 * 158.23277 * 6 4 3 8 8 Si 1.86804 * 120.00056 * 338.22976 * 6 4 3 9 9 H 1.48501 * 109.47172 * 95.31351 * 8 6 4 10 10 H 1.48501 * 109.47350 * 215.31770 * 8 6 4 11 11 H 1.48507 * 109.46801 * 335.31897 * 8 6 4 12 12 C 1.46494 * 119.99731 * 94.68436 * 3 2 1 13 13 C 1.50700 * 109.47382 * 89.99562 * 12 3 2 14 14 C 1.38285 * 119.92051 * 89.99687 * 13 12 3 15 15 C 1.38109 * 120.07225 * 179.97438 * 14 13 12 16 16 C 1.38906 * 119.92716 * 0.02562 * 15 14 13 17 17 N 1.39671 * 120.07749 * 179.97438 * 16 15 14 18 18 C 1.48527 * 111.00251 * 116.50779 * 17 16 15 19 19 C 1.54938 * 103.22748 * 159.72065 * 18 17 16 20 20 C 1.54598 * 102.92148 * 322.58966 * 19 18 17 21 21 C 1.47904 * 110.99901 * 233.91054 * 17 16 15 22 22 C 1.38912 * 119.84833 * 0.24963 * 16 15 14 23 23 C 1.38101 * 119.92529 * 359.51591 * 22 16 15 24 24 H 1.08998 * 109.46922 * 299.99704 * 1 2 3 25 25 H 1.08999 * 109.47278 * 59.99892 * 1 2 3 26 26 H 1.09006 * 109.47273 * 179.97438 * 1 2 3 27 27 H 1.09007 * 109.46769 * 240.00327 * 2 1 3 28 28 H 1.08994 * 109.47397 * 120.00574 * 2 1 3 29 29 H 0.97001 * 119.99634 * 179.97438 * 7 6 4 30 30 H 1.09004 * 109.47015 * 330.00131 * 12 3 2 31 31 H 1.08997 * 109.47318 * 209.99849 * 12 3 2 32 32 H 1.08000 * 119.96858 * 0.02844 * 14 13 12 33 33 H 1.08003 * 120.03704 * 179.97438 * 15 14 13 34 34 H 1.08995 * 110.67294 * 278.15616 * 18 17 16 35 35 H 1.08999 * 110.66568 * 41.29168 * 18 17 16 36 36 H 1.08998 * 110.72523 * 204.22806 * 19 18 17 37 37 H 1.09008 * 110.72576 * 80.94364 * 19 18 17 38 38 H 1.08998 * 110.30842 * 263.03784 * 20 19 18 39 39 H 1.09007 * 110.30944 * 140.87533 * 20 19 18 40 40 H 1.09000 * 109.91896 * 333.49903 * 21 17 16 41 41 H 1.08997 * 109.92034 * 94.60376 * 21 17 16 42 42 H 1.08004 * 120.03526 * 179.74940 * 22 16 15 43 43 H 1.08000 * 119.96323 * 180.23217 * 23 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1552 2.0590 -1.1819 5 1 2.5037 1.5420 -2.0637 6 6 1.8463 3.4108 -1.2466 7 7 2.3571 4.1576 -2.2026 8 14 0.7056 4.1701 0.0230 9 1 1.5117 4.7759 1.1132 10 1 -0.1237 5.2198 -0.6215 11 1 -0.1778 3.1178 0.5867 12 6 2.3601 2.0373 1.2645 13 6 3.8124 1.7902 1.5821 14 6 4.7770 2.6719 1.1303 15 6 6.1088 2.4488 1.4200 16 6 6.4789 1.3369 2.1658 17 7 7.8249 1.1079 2.4602 18 6 8.0673 1.1683 3.9243 19 6 9.4017 0.3995 4.0947 20 6 9.2769 -0.7431 3.0608 21 6 8.2362 -0.2489 2.0389 22 6 5.5078 0.4501 2.6133 23 6 4.1775 0.6818 2.3241 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 2.1409 5.1021 -2.2479 30 1 1.7394 1.6318 2.0635 31 1 2.1848 3.1094 1.1766 32 1 4.4887 3.5365 0.5509 33 1 6.8618 3.1377 1.0665 34 1 8.1739 2.2016 4.2544 35 1 7.2645 0.6704 4.4680 36 1 9.4894 -0.0018 5.1043 37 1 10.2500 1.0421 3.8588 38 1 8.9280 -1.6551 3.5451 39 1 10.2352 -0.9166 2.5711 40 1 7.3731 -0.9146 2.0364 41 1 8.6783 -0.2105 1.0433 42 1 5.7926 -0.4176 3.1899 43 1 3.4216 -0.0053 2.6749 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001253997249.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:41 Heat of formation + Delta-G solvation = 56.938953 kcal Electronic energy + Delta-G solvation = -21406.478536 eV Core-core repulsion = 18452.192487 eV Total energy + Delta-G solvation = -2954.286048 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.96928 -37.87807 -35.90107 -32.61099 -31.91920 -30.42955 -30.12140 -28.93861 -28.19230 -25.14412 -23.77046 -22.63285 -21.70144 -20.99424 -20.34148 -19.83407 -17.19539 -16.74372 -16.09809 -15.38858 -14.81214 -14.63315 -14.29251 -14.05117 -13.91380 -13.34437 -13.20151 -12.91342 -12.91265 -12.59110 -12.20996 -12.05483 -11.87897 -11.55687 -11.46305 -11.35668 -11.23761 -11.05860 -10.79592 -10.75158 -10.67804 -10.38882 -10.01001 -9.89973 -9.58265 -8.54506 -8.48226 -8.38282 -7.93078 -6.86731 -6.01005 -3.41306 1.77942 1.94905 3.28666 3.45499 3.50292 4.00336 4.18689 4.50350 4.57719 4.70780 4.84988 5.14968 5.21582 5.27370 5.32977 5.38556 5.40761 5.60693 5.64444 5.68393 5.69794 5.85293 5.90809 5.91202 5.95181 6.02689 6.04670 6.21702 6.22562 6.29688 6.32750 6.46814 6.53779 6.65799 6.78625 6.81191 6.88527 6.90105 7.07018 7.34154 7.36294 7.75213 8.03758 8.38277 8.96197 9.69075 10.10113 11.14319 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.025748 B = 0.004726 C = 0.004396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.183350 B = 5923.779513 C = 6368.304866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.147 3.853 3 N -0.597 5.597 4 C -0.262 4.262 5 H 0.078 0.922 6 C 0.038 3.962 7 N -0.897 5.897 8 Si 0.871 3.129 9 H -0.284 1.284 10 H -0.301 1.301 11 H -0.266 1.266 12 C 0.167 3.833 13 C -0.077 4.077 14 C -0.087 4.087 15 C -0.095 4.095 16 C 0.056 3.944 17 N -0.479 5.479 18 C 0.039 3.961 19 C -0.123 4.123 20 C -0.131 4.131 21 C 0.036 3.964 22 C -0.156 4.156 23 C -0.110 4.110 24 H 0.041 0.959 25 H 0.057 0.943 26 H 0.038 0.962 27 H 0.047 0.953 28 H 0.038 0.962 29 H 0.263 0.737 30 H 0.047 0.953 31 H 0.061 0.939 32 H 0.128 0.872 33 H 0.121 0.879 34 H 0.081 0.919 35 H 0.048 0.952 36 H 0.070 0.930 37 H 0.074 0.926 38 H 0.065 0.935 39 H 0.071 0.929 40 H 0.051 0.949 41 H 0.079 0.921 42 H 0.108 0.892 43 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.270 -8.145 12.615 17.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.021 3.979 3 N -0.319 5.319 4 C -0.391 4.391 5 H 0.095 0.905 6 C -0.162 4.162 7 N -0.538 5.538 8 Si 0.701 3.299 9 H -0.213 1.213 10 H -0.229 1.229 11 H -0.191 1.191 12 C 0.042 3.958 13 C -0.080 4.080 14 C -0.106 4.106 15 C -0.113 4.113 16 C -0.038 4.038 17 N -0.201 5.201 18 C -0.088 4.088 19 C -0.161 4.161 20 C -0.169 4.169 21 C -0.091 4.091 22 C -0.176 4.176 23 C -0.129 4.129 24 H 0.060 0.940 25 H 0.076 0.924 26 H 0.057 0.943 27 H 0.066 0.934 28 H 0.057 0.943 29 H 0.073 0.927 30 H 0.066 0.934 31 H 0.079 0.921 32 H 0.146 0.854 33 H 0.139 0.861 34 H 0.100 0.900 35 H 0.066 0.934 36 H 0.088 0.912 37 H 0.093 0.907 38 H 0.084 0.916 39 H 0.090 0.910 40 H 0.070 0.930 41 H 0.098 0.902 42 H 0.126 0.874 43 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 9.551 -7.602 12.211 17.266 hybrid contribution -1.137 -0.093 0.925 1.469 sum 8.414 -7.695 13.135 17.394 Atomic orbital electron populations 1.22314 0.99470 0.99148 1.01792 1.20846 0.91815 0.86285 0.98926 1.44142 1.73714 1.11493 1.02509 1.18759 1.39212 0.92591 0.88497 0.90472 1.25432 0.97754 0.96706 0.96358 1.69875 1.43016 1.06116 1.34762 0.87038 0.82784 0.78751 0.81345 1.21258 1.22925 1.19092 1.20271 0.88854 0.97953 0.88719 1.20951 0.98777 0.93946 0.94342 1.21128 0.91851 0.99883 0.97732 1.20929 0.95964 0.96742 0.97715 1.18776 0.87660 0.96555 1.00795 1.62361 1.16973 1.27277 1.13458 1.23313 0.96454 1.01025 0.87986 1.22490 0.97864 0.97068 0.98725 1.22409 0.99531 0.98190 0.96767 1.22987 0.97858 0.88747 0.99481 1.21344 0.93902 0.99802 1.02522 1.20803 0.95110 0.97518 0.99510 0.94003 0.92376 0.94303 0.93429 0.94336 0.92691 0.93421 0.92104 0.85421 0.86116 0.90014 0.93385 0.91159 0.90715 0.91621 0.91011 0.93036 0.90249 0.87386 0.87010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.09 10.21 37.16 0.38 -2.71 16 2 C 0.15 2.92 6.39 -4.04 -0.03 2.89 16 3 N -0.60 -13.96 2.07 -174.61 -0.36 -14.33 16 4 C -0.26 -7.18 9.92 -15.06 -0.15 -7.33 16 5 H 0.08 2.32 8.06 -52.49 -0.42 1.90 16 6 C 0.04 1.07 5.31 -17.43 -0.09 0.98 16 7 N -0.90 -26.79 13.97 55.49 0.78 -26.02 16 8 Si 0.87 21.76 25.01 -169.99 -4.25 17.51 16 9 H -0.28 -6.90 6.67 56.52 0.38 -6.53 16 10 H -0.30 -7.69 7.11 56.52 0.40 -7.29 16 11 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 12 C 0.17 3.62 4.60 -5.20 -0.02 3.59 16 13 C -0.08 -1.54 5.47 -104.59 -0.57 -2.11 16 14 C -0.09 -1.76 9.69 -39.61 -0.38 -2.15 16 15 C -0.09 -1.71 9.97 -39.38 -0.39 -2.11 16 16 C 0.06 0.92 4.86 -83.79 -0.41 0.52 16 17 N -0.48 -6.79 5.28 -167.17 -0.88 -7.68 16 18 C 0.04 0.45 6.43 -1.90 -0.01 0.44 16 19 C -0.12 -1.13 7.06 -24.87 -0.18 -1.31 16 20 C -0.13 -1.23 6.93 -25.37 -0.18 -1.40 16 21 C 0.04 0.44 6.48 -2.75 -0.02 0.43 16 22 C -0.16 -2.47 7.91 -39.38 -0.31 -2.79 16 23 C -0.11 -1.90 9.69 -39.61 -0.38 -2.28 16 24 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 26 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.05 0.96 8.08 -51.92 -0.42 0.54 16 28 H 0.04 0.68 8.04 -51.93 -0.42 0.26 16 29 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 30 H 0.05 0.93 8.01 -51.93 -0.42 0.51 16 31 H 0.06 1.43 3.17 -51.93 -0.16 1.27 16 32 H 0.13 2.83 8.06 -52.49 -0.42 2.41 16 33 H 0.12 2.05 8.06 -52.48 -0.42 1.63 16 34 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 35 H 0.05 0.56 7.07 -51.93 -0.37 0.20 16 36 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.07 0.67 8.14 -51.92 -0.42 0.25 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.07 0.60 8.14 -51.92 -0.42 0.18 16 40 H 0.05 0.66 6.26 -51.93 -0.33 0.34 16 41 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.11 1.49 7.04 -52.48 -0.37 1.12 16 43 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 LS Contribution 339.63 15.07 5.12 5.12 Total: -1.00 -29.53 339.63 -9.48 -39.01 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: -7.13 Total: 1.72 kcal Atomic # 6 Polarization: -12.59 SS G_CDS: -2.74 Total: -15.33 kcal Atomic # 7 Polarization: -47.55 SS G_CDS: -0.47 Total: -48.02 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.25 Total: 17.51 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -29.53 -9.48 -39.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001253997249.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.949 kcal (2) G-P(sol) polarization free energy of solvation -29.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.010 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds