Wall clock time and date at job start Mon Mar 30 2020 01:17:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46504 * 109.46983 * 2 1 4 4 C 1.36933 * 119.99945 * 274.68304 * 3 2 1 5 5 H 1.07998 * 120.00393 * 322.35787 * 4 3 2 6 6 C 1.38813 * 119.99813 * 142.36705 * 4 3 2 7 7 N 1.31622 * 120.00043 * 158.23277 * 6 4 3 8 8 Si 1.86804 * 120.00056 * 338.22976 * 6 4 3 9 9 H 1.48501 * 109.47172 * 95.31351 * 8 6 4 10 10 H 1.48501 * 109.47350 * 215.31770 * 8 6 4 11 11 H 1.48507 * 109.46801 * 335.31897 * 8 6 4 12 12 C 1.46494 * 119.99731 * 94.68436 * 3 2 1 13 13 C 1.50700 * 109.47382 * 89.99562 * 12 3 2 14 14 C 1.38285 * 119.92051 * 89.99687 * 13 12 3 15 15 C 1.38109 * 120.07225 * 179.97438 * 14 13 12 16 16 C 1.38906 * 119.92716 * 0.02562 * 15 14 13 17 17 N 1.39671 * 120.07749 * 179.97438 * 16 15 14 18 18 C 1.48527 * 111.00251 * 116.50779 * 17 16 15 19 19 C 1.54938 * 103.22748 * 159.72065 * 18 17 16 20 20 C 1.54598 * 102.92148 * 322.58966 * 19 18 17 21 21 C 1.47904 * 110.99901 * 233.91054 * 17 16 15 22 22 C 1.38912 * 119.84833 * 0.24963 * 16 15 14 23 23 C 1.38101 * 119.92529 * 359.51591 * 22 16 15 24 24 H 1.08998 * 109.46922 * 299.99704 * 1 2 3 25 25 H 1.08999 * 109.47278 * 59.99892 * 1 2 3 26 26 H 1.09006 * 109.47273 * 179.97438 * 1 2 3 27 27 H 1.09007 * 109.46769 * 240.00327 * 2 1 3 28 28 H 1.08994 * 109.47397 * 120.00574 * 2 1 3 29 29 H 0.97001 * 119.99634 * 179.97438 * 7 6 4 30 30 H 1.09004 * 109.47015 * 330.00131 * 12 3 2 31 31 H 1.08997 * 109.47318 * 209.99849 * 12 3 2 32 32 H 1.08000 * 119.96858 * 0.02844 * 14 13 12 33 33 H 1.08003 * 120.03704 * 179.97438 * 15 14 13 34 34 H 1.08995 * 110.67294 * 278.15616 * 18 17 16 35 35 H 1.08999 * 110.66568 * 41.29168 * 18 17 16 36 36 H 1.08998 * 110.72523 * 204.22806 * 19 18 17 37 37 H 1.09008 * 110.72576 * 80.94364 * 19 18 17 38 38 H 1.08998 * 110.30842 * 263.03784 * 20 19 18 39 39 H 1.09007 * 110.30944 * 140.87533 * 20 19 18 40 40 H 1.09000 * 109.91896 * 333.49903 * 21 17 16 41 41 H 1.08997 * 109.92034 * 94.60376 * 21 17 16 42 42 H 1.08004 * 120.03526 * 179.74940 * 22 16 15 43 43 H 1.08000 * 119.96323 * 180.23217 * 23 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1552 2.0590 -1.1819 5 1 2.5037 1.5420 -2.0637 6 6 1.8463 3.4108 -1.2466 7 7 2.3571 4.1576 -2.2026 8 14 0.7056 4.1701 0.0230 9 1 1.5117 4.7759 1.1132 10 1 -0.1237 5.2198 -0.6215 11 1 -0.1778 3.1178 0.5867 12 6 2.3601 2.0373 1.2645 13 6 3.8124 1.7902 1.5821 14 6 4.7770 2.6719 1.1303 15 6 6.1088 2.4488 1.4200 16 6 6.4789 1.3369 2.1658 17 7 7.8249 1.1079 2.4602 18 6 8.0673 1.1683 3.9243 19 6 9.4017 0.3995 4.0947 20 6 9.2769 -0.7431 3.0608 21 6 8.2362 -0.2489 2.0389 22 6 5.5078 0.4501 2.6133 23 6 4.1775 0.6818 2.3241 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 2.1409 5.1021 -2.2479 30 1 1.7394 1.6318 2.0635 31 1 2.1848 3.1094 1.1766 32 1 4.4887 3.5365 0.5509 33 1 6.8618 3.1377 1.0665 34 1 8.1739 2.2016 4.2544 35 1 7.2645 0.6704 4.4680 36 1 9.4894 -0.0018 5.1043 37 1 10.2500 1.0421 3.8588 38 1 8.9280 -1.6551 3.5451 39 1 10.2352 -0.9166 2.5711 40 1 7.3731 -0.9146 2.0364 41 1 8.6783 -0.2105 1.0433 42 1 5.7926 -0.4176 3.1899 43 1 3.4216 -0.0053 2.6749 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001253997249.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:40 Heat of formation + Delta-G solvation = 40.497391 kcal Electronic energy + Delta-G solvation = -21407.191495 eV Core-core repulsion = 18452.192487 eV Total energy + Delta-G solvation = -2954.999008 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.16709 -39.20350 -37.52029 -34.03818 -33.74329 -31.84120 -31.57397 -29.82112 -29.73181 -26.79737 -25.50658 -23.92400 -23.00204 -21.96486 -21.76337 -21.24061 -18.95565 -18.11777 -17.41652 -16.89696 -16.33069 -16.22060 -15.74197 -15.23890 -15.07852 -15.04239 -14.78269 -14.31538 -14.19442 -13.93025 -13.83031 -13.33201 -13.25212 -13.03202 -12.86070 -12.64277 -12.52045 -12.28487 -12.19419 -12.08174 -12.03390 -11.83965 -11.57449 -11.50288 -11.43066 -10.64604 -9.79992 -9.58364 -9.31912 -8.78930 -8.19190 -5.56374 0.37524 0.53471 1.28569 1.39382 1.50066 2.41145 2.73607 2.95338 3.13419 3.51279 3.72541 3.90411 3.94712 4.06781 4.10745 4.13595 4.34756 4.37876 4.39705 4.54910 4.59525 4.61868 4.67868 4.78705 4.83504 4.86608 4.91735 4.93659 4.97938 5.04425 5.04645 5.15418 5.20675 5.25755 5.30176 5.44752 5.53107 5.55388 5.84788 5.85556 5.93447 5.97438 6.18891 6.49031 6.99061 7.63439 8.05631 9.00613 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.025748 B = 0.004726 C = 0.004396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.183350 B = 5923.779513 C = 6368.304866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.141 3.859 3 N -0.608 5.608 4 C -0.248 4.248 5 H 0.035 0.965 6 C -0.012 4.012 7 N -0.947 5.947 8 Si 0.933 3.067 9 H -0.277 1.277 10 H -0.310 1.310 11 H -0.251 1.251 12 C 0.166 3.834 13 C -0.098 4.098 14 C -0.109 4.109 15 C -0.108 4.108 16 C 0.069 3.931 17 N -0.497 5.497 18 C 0.034 3.966 19 C -0.116 4.116 20 C -0.124 4.124 21 C 0.031 3.969 22 C -0.147 4.147 23 C -0.102 4.102 24 H 0.044 0.956 25 H 0.030 0.970 26 H 0.074 0.926 27 H 0.037 0.963 28 H 0.070 0.930 29 H 0.261 0.739 30 H 0.077 0.923 31 H 0.037 0.963 32 H 0.092 0.908 33 H 0.121 0.879 34 H 0.078 0.922 35 H 0.052 0.948 36 H 0.093 0.907 37 H 0.075 0.925 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.048 0.952 41 H 0.070 0.930 42 H 0.139 0.861 43 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.764 -10.737 15.979 21.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.017 3.983 3 N -0.331 5.331 4 C -0.378 4.378 5 H 0.052 0.948 6 C -0.209 4.209 7 N -0.591 5.591 8 Si 0.762 3.238 9 H -0.205 1.205 10 H -0.239 1.239 11 H -0.175 1.175 12 C 0.042 3.958 13 C -0.100 4.100 14 C -0.128 4.128 15 C -0.127 4.127 16 C -0.026 4.026 17 N -0.219 5.219 18 C -0.091 4.091 19 C -0.154 4.154 20 C -0.162 4.162 21 C -0.096 4.096 22 C -0.167 4.167 23 C -0.121 4.121 24 H 0.063 0.937 25 H 0.049 0.951 26 H 0.093 0.907 27 H 0.055 0.945 28 H 0.089 0.911 29 H 0.070 0.930 30 H 0.095 0.905 31 H 0.055 0.945 32 H 0.111 0.889 33 H 0.139 0.861 34 H 0.097 0.903 35 H 0.071 0.929 36 H 0.112 0.888 37 H 0.094 0.906 38 H 0.100 0.900 39 H 0.101 0.899 40 H 0.067 0.933 41 H 0.089 0.911 42 H 0.157 0.843 43 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 10.049 -10.231 15.616 21.202 hybrid contribution -1.123 0.607 -0.109 1.281 sum 8.926 -9.624 15.507 20.316 Atomic orbital electron populations 1.22205 0.97994 1.01151 1.00531 1.21017 0.92955 0.84350 0.99972 1.44250 1.74537 1.12547 1.01719 1.18544 1.37598 0.92579 0.89071 0.94755 1.25953 0.99170 0.97256 0.98507 1.70002 1.45160 1.06356 1.37567 0.86027 0.80683 0.77950 0.79168 1.20467 1.23925 1.17459 1.20274 0.90546 0.96566 0.88449 1.20818 0.97539 0.95374 0.96315 1.20958 0.93369 0.99675 0.98834 1.20969 0.95047 0.98013 0.98659 1.18918 0.89240 0.95408 0.99011 1.62352 1.15293 1.28786 1.15466 1.23415 0.98097 1.01516 0.86099 1.22490 0.96259 0.96633 0.99987 1.22402 0.99091 0.98691 0.95997 1.23068 0.98646 0.87662 1.00179 1.21638 0.93105 1.00222 1.01721 1.21025 0.96432 0.96486 0.98181 0.93721 0.95078 0.90687 0.94486 0.91134 0.92954 0.90457 0.94518 0.88924 0.86093 0.90316 0.92945 0.88808 0.90619 0.89961 0.89893 0.93321 0.91148 0.84302 0.84290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.47 10.21 71.98 0.74 -4.74 16 2 C 0.14 5.36 6.39 86.38 0.55 5.91 16 3 N -0.61 -28.27 2.07 -706.35 -1.46 -29.73 16 4 C -0.25 -14.10 9.92 84.03 0.83 -13.27 16 5 H 0.03 2.21 8.06 -2.91 -0.02 2.19 16 6 C -0.01 -0.72 5.31 84.86 0.45 -0.27 16 7 N -0.95 -59.60 13.97 21.65 0.30 -59.30 16 8 Si 0.93 46.26 25.01 68.60 1.72 47.97 16 9 H -0.28 -13.26 6.67 99.48 0.66 -12.60 16 10 H -0.31 -15.70 7.11 99.48 0.71 -14.99 16 11 H -0.25 -11.66 7.11 99.48 0.71 -10.96 16 12 C 0.17 7.01 4.60 85.63 0.39 7.41 16 13 C -0.10 -3.84 5.47 -19.84 -0.11 -3.95 16 14 C -0.11 -4.59 9.69 22.25 0.22 -4.37 16 15 C -0.11 -3.98 9.97 22.40 0.22 -3.75 16 16 C 0.07 2.15 4.86 38.21 0.19 2.34 16 17 N -0.50 -13.10 5.28 -682.81 -3.60 -16.71 16 18 C 0.03 0.70 6.43 86.65 0.56 1.26 16 19 C -0.12 -1.70 7.06 31.80 0.22 -1.47 16 20 C -0.12 -1.86 6.93 31.47 0.22 -1.64 16 21 C 0.03 0.68 6.48 86.45 0.56 1.24 16 22 C -0.15 -4.21 7.91 22.40 0.18 -4.03 16 23 C -0.10 -3.22 9.69 22.25 0.22 -3.01 16 24 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 25 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 26 H 0.07 2.02 8.14 -2.38 -0.02 2.00 16 27 H 0.04 1.46 8.08 -2.38 -0.02 1.44 16 28 H 0.07 2.22 8.04 -2.39 -0.02 2.20 16 29 H 0.26 15.67 8.31 -92.71 -0.77 14.90 16 30 H 0.08 2.77 8.01 -2.38 -0.02 2.75 16 31 H 0.04 1.73 3.17 -2.39 -0.01 1.72 16 32 H 0.09 4.47 8.06 -2.91 -0.02 4.44 16 33 H 0.12 4.30 8.06 -2.91 -0.02 4.27 16 34 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.05 1.03 7.07 -2.39 -0.02 1.02 16 36 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.08 1.11 8.14 -2.38 -0.02 1.09 16 38 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 40 H 0.05 1.10 6.26 -2.39 -0.01 1.08 16 41 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 42 H 0.14 3.16 7.04 -2.91 -0.02 3.14 16 43 H 0.14 3.62 8.06 -2.91 -0.02 3.60 16 Total: -1.00 -67.19 339.63 3.31 -63.88 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: 0.92 Total: 16.24 kcal Atomic # 6 Polarization: -27.78 SS G_CDS: 5.44 Total: -22.35 kcal Atomic # 7 Polarization: -100.98 SS G_CDS: -4.76 Total: -105.74 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 1.72 Total: 47.97 kcal Total: -67.19 3.31 -63.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001253997249.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.373 kcal (2) G-P(sol) polarization free energy of solvation -67.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.876 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds