Wall clock time and date at job start Mon Mar 30 2020 01:21:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.47903 * 110.99893 * 2 1 4 4 C 1.53992 * 107.05913 * 214.15928 * 3 2 1 5 5 C 1.54595 * 105.14100 * 1.22585 * 4 3 2 6 6 H 1.09003 * 110.72406 * 263.42572 * 5 4 3 7 7 N 1.46898 * 110.72565 * 140.31944 * 5 4 3 8 8 C 1.46903 * 110.99759 * 292.33335 * 7 5 4 9 9 C 1.50698 * 109.47021 * 271.12801 * 8 7 5 10 10 H 1.07993 * 120.00342 * 354.69829 * 9 8 7 11 11 C 1.37876 * 119.99821 * 174.69074 * 9 8 7 12 12 N 1.31520 * 120.00350 * 0.02562 * 11 9 8 13 13 Si 1.86796 * 119.99867 * 180.02562 * 11 9 8 14 14 H 1.48493 * 109.47283 * 60.00555 * 13 11 9 15 15 H 1.48507 * 109.46874 * 180.02562 * 13 11 9 16 16 H 1.48504 * 109.47169 * 300.00002 * 13 11 9 17 17 C 1.46901 * 110.99913 * 56.28434 * 7 5 4 18 18 C 1.50702 * 109.47144 * 66.54543 * 17 7 5 19 19 C 1.38232 * 119.99859 * 269.23432 * 18 17 7 20 20 C 1.38235 * 119.99996 * 179.76774 * 19 18 17 21 21 C 1.38240 * 119.99476 * 0.47900 * 20 19 18 22 22 C 1.38229 * 120.00268 * 359.78956 * 21 20 19 23 23 C 1.38230 * 120.00183 * 359.95961 * 22 21 20 24 24 C 1.48537 * 110.99879 * 242.60747 * 2 1 3 25 25 H 1.08996 * 109.47407 * 59.87455 * 1 2 3 26 26 H 1.09003 * 109.46953 * 179.86829 * 1 2 3 27 27 H 1.08991 * 109.47106 * 299.86761 * 1 2 3 28 28 H 1.09006 * 109.91756 * 333.51542 * 3 2 1 29 29 H 1.09007 * 109.91253 * 94.80363 * 3 2 1 30 30 H 1.08996 * 110.31095 * 120.14589 * 4 3 2 31 31 H 1.09004 * 110.30359 * 242.20963 * 4 3 2 32 32 H 1.09000 * 109.47006 * 31.12840 * 8 7 5 33 33 H 1.09000 * 109.46978 * 151.12643 * 8 7 5 34 34 H 0.96993 * 120.00148 * 179.97438 * 12 11 9 35 35 H 1.09005 * 109.47163 * 186.54504 * 17 7 5 36 36 H 1.08996 * 109.47368 * 306.54280 * 17 7 5 37 37 H 1.08004 * 120.00286 * 359.97438 * 19 18 17 38 38 H 1.08001 * 120.00423 * 180.24936 * 20 19 18 39 39 H 1.08007 * 119.99457 * 179.77499 * 21 20 19 40 40 H 1.08001 * 119.99633 * 179.97438 * 22 21 20 41 41 H 1.07995 * 120.00366 * 179.97438 * 23 22 21 42 42 H 1.08994 * 110.66876 * 278.15115 * 24 2 1 43 43 H 1.09006 * 110.66789 * 41.28733 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9990 1.3808 0.0000 4 6 3.2982 1.3660 -0.8266 5 6 3.4491 -0.0928 -1.3155 6 1 4.1140 -0.6531 -0.6581 7 7 3.9385 -0.1290 -2.7001 8 6 2.9294 0.3970 -3.6291 9 6 2.0297 -0.7243 -4.0810 10 1 2.2422 -1.7404 -3.7835 11 6 0.9351 -0.4527 -4.8741 12 7 0.6764 0.7847 -5.2368 13 14 -0.1806 -1.8425 -5.4337 14 1 -0.7578 -2.5225 -4.2465 15 1 -1.2766 -1.2911 -6.2704 16 1 0.6060 -2.8187 -6.2298 17 6 5.2057 0.6026 -2.8299 18 6 6.2830 -0.1182 -2.0611 19 6 6.5187 0.2013 -0.7370 20 6 7.5036 -0.4632 -0.0304 21 6 8.2594 -1.4403 -0.6509 22 6 8.0275 -1.7559 -1.9765 23 6 7.0391 -1.0950 -2.6816 24 6 2.0013 -0.6380 -1.2312 25 1 -0.3634 0.5158 -0.8888 26 1 -0.3633 -1.0277 -0.0024 27 1 -0.3633 0.5117 0.8911 28 1 1.2757 2.0562 -0.4570 29 1 2.2122 1.6966 1.0213 30 1 3.2136 2.0431 -1.6766 31 1 4.1467 1.6473 -0.2028 32 1 2.3349 1.1596 -3.1259 33 1 3.4259 0.8358 -4.4945 34 1 -0.0935 0.9757 -5.7950 35 1 5.4863 0.6598 -3.8817 36 1 5.0863 1.6098 -2.4305 37 1 5.9311 0.9678 -0.2535 38 1 7.6850 -0.2165 1.0053 39 1 9.0314 -1.9570 -0.0998 40 1 8.6183 -2.5190 -2.4613 41 1 6.8581 -1.3412 -3.7174 42 1 2.0042 -1.7234 -1.1317 43 1 1.4237 -0.3321 -2.1036 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255432300.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:40 Heat of formation + Delta-G solvation = 44.075092 kcal Electronic energy + Delta-G solvation = -22000.555708 eV Core-core repulsion = 19045.711841 eV Total energy + Delta-G solvation = -2954.843867 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.57264 -38.42711 -35.60077 -32.85918 -31.42744 -30.70077 -30.19630 -27.92910 -27.17530 -25.05311 -24.08385 -22.29285 -22.08533 -21.10960 -20.20600 -18.66846 -16.65550 -16.18046 -16.05339 -15.27893 -14.93769 -14.67244 -14.63347 -14.11727 -13.42648 -13.23636 -13.21203 -13.12511 -12.77974 -12.33538 -12.23398 -12.14924 -11.61187 -11.17781 -11.12819 -11.06610 -10.95061 -10.82839 -10.64453 -10.55034 -10.51943 -10.34166 -10.15759 -9.54222 -9.34861 -8.65376 -8.49978 -8.41590 -7.84059 -7.25011 -6.06284 -4.05353 1.61987 1.66720 3.30530 3.35074 3.38466 4.01761 4.39004 4.56409 4.97853 5.10633 5.13510 5.21572 5.24119 5.26629 5.35258 5.49111 5.52433 5.70955 5.77181 5.78113 5.92856 5.98661 6.02616 6.10429 6.14809 6.19451 6.28162 6.31170 6.33375 6.38010 6.56879 6.70574 6.73591 6.82095 6.93675 7.01252 7.13379 7.26425 7.29556 7.40570 7.62490 7.81714 8.09052 8.17518 8.47966 9.01451 9.55638 11.02547 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.016131 B = 0.006317 C = 0.005115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1735.364950 B = 4431.602876 C = 5472.555144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.530 5.530 3 C 0.043 3.957 4 C -0.163 4.163 5 C 0.095 3.905 6 H 0.078 0.922 7 N -0.520 5.520 8 C 0.186 3.814 9 C -0.495 4.495 10 H 0.065 0.935 11 C 0.054 3.946 12 N -0.899 5.899 13 Si 0.893 3.107 14 H -0.276 1.276 15 H -0.289 1.289 16 H -0.276 1.276 17 C 0.089 3.911 18 C -0.060 4.060 19 C -0.116 4.116 20 C -0.125 4.125 21 C -0.131 4.131 22 C -0.124 4.124 23 C -0.100 4.100 24 C 0.026 3.974 25 H 0.031 0.969 26 H 0.064 0.936 27 H 0.057 0.943 28 H 0.040 0.960 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.060 0.940 32 H 0.008 0.992 33 H 0.020 0.980 34 H 0.261 0.739 35 H 0.078 0.922 36 H 0.035 0.965 37 H 0.117 0.883 38 H 0.115 0.885 39 H 0.114 0.886 40 H 0.116 0.884 41 H 0.122 0.878 42 H 0.071 0.929 43 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.980 -0.038 9.163 12.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.255 5.255 3 C -0.086 4.086 4 C -0.203 4.203 5 C -0.015 4.015 6 H 0.097 0.903 7 N -0.243 5.243 8 C 0.062 3.938 9 C -0.534 4.534 10 H 0.083 0.917 11 C -0.147 4.147 12 N -0.538 5.538 13 Si 0.721 3.279 14 H -0.202 1.202 15 H -0.215 1.215 16 H -0.201 1.201 17 C -0.039 4.039 18 C -0.061 4.061 19 C -0.135 4.135 20 C -0.143 4.143 21 C -0.150 4.150 22 C -0.142 4.142 23 C -0.118 4.118 24 C -0.101 4.101 25 H 0.050 0.950 26 H 0.083 0.917 27 H 0.076 0.924 28 H 0.058 0.942 29 H 0.085 0.915 30 H 0.089 0.911 31 H 0.079 0.921 32 H 0.026 0.974 33 H 0.038 0.962 34 H 0.071 0.929 35 H 0.096 0.904 36 H 0.053 0.947 37 H 0.135 0.865 38 H 0.133 0.867 39 H 0.132 0.868 40 H 0.134 0.866 41 H 0.140 0.860 42 H 0.090 0.910 43 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 9.068 -0.703 9.368 13.057 hybrid contribution -1.154 0.608 -0.805 1.533 sum 7.914 -0.095 8.563 11.661 Atomic orbital electron populations 1.22426 0.88649 1.01734 1.00132 1.64745 1.07622 1.14220 1.38884 1.22696 0.95952 0.90710 0.99203 1.23104 0.97019 1.00511 0.99679 1.22473 0.95995 0.92887 0.90130 0.90346 1.62315 1.03278 1.54400 1.04346 1.19860 0.89004 0.95075 0.89897 1.21126 1.08398 0.94300 1.29583 0.91670 1.24980 0.97858 0.95520 0.96327 1.69943 1.28685 1.18301 1.36906 0.86631 0.80148 0.82315 0.78819 1.20193 1.21451 1.20133 1.21116 0.89456 0.94093 0.99219 1.19966 0.95758 0.96312 0.94043 1.21128 0.97853 1.00306 0.94189 1.21046 0.96612 0.97138 0.99470 1.21034 1.00189 0.98555 0.95192 1.21097 0.98481 0.99955 0.94682 1.21072 0.94989 0.95423 1.00338 1.23834 0.95070 0.98989 0.92201 0.95029 0.91718 0.92394 0.94187 0.91525 0.91136 0.92142 0.97432 0.96182 0.92896 0.90393 0.94685 0.86467 0.86671 0.86781 0.86557 0.85954 0.91009 0.87457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 9.40 60.07 0.56 0.89 16 2 N -0.53 -9.61 5.55 -238.71 -1.33 -10.94 16 3 C 0.04 0.72 6.70 -2.75 -0.02 0.70 16 4 C -0.16 -2.80 4.76 -25.38 -0.12 -2.92 16 5 C 0.10 1.81 2.70 -65.85 -0.18 1.63 16 6 H 0.08 1.49 6.75 -51.93 -0.35 1.14 16 7 N -0.52 -10.70 4.50 -227.29 -1.02 -11.73 16 8 C 0.19 4.55 4.07 -4.97 -0.02 4.53 16 9 C -0.50 -13.13 6.55 -34.44 -0.23 -13.36 16 10 H 0.07 1.76 7.78 -52.49 -0.41 1.35 16 11 C 0.05 1.48 5.46 -17.82 -0.10 1.38 16 12 N -0.90 -25.62 13.29 55.43 0.74 -24.89 16 13 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 16 14 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 15 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 16 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 17 C 0.09 1.57 4.79 -4.97 -0.02 1.55 16 18 C -0.06 -0.95 4.89 -104.62 -0.51 -1.47 16 19 C -0.12 -1.67 8.22 -39.58 -0.33 -2.00 16 20 C -0.12 -1.60 10.05 -39.58 -0.40 -2.00 16 21 C -0.13 -1.62 10.05 -39.58 -0.40 -2.02 16 22 C -0.12 -1.62 10.05 -39.59 -0.40 -2.02 16 23 C -0.10 -1.49 9.70 -39.58 -0.38 -1.88 16 24 C 0.03 0.52 5.21 -1.90 -0.01 0.51 16 25 H 0.03 0.57 8.00 -51.93 -0.42 0.15 16 26 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 27 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.04 0.69 7.73 -51.93 -0.40 0.29 16 29 H 0.07 0.99 8.14 -51.92 -0.42 0.57 16 30 H 0.07 1.32 5.97 -51.93 -0.31 1.01 16 31 H 0.06 0.90 6.35 -51.93 -0.33 0.57 16 32 H 0.01 0.21 5.76 -51.93 -0.30 -0.09 16 33 H 0.02 0.53 7.51 -51.93 -0.39 0.14 16 34 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 35 H 0.08 1.39 7.72 -51.93 -0.40 0.99 16 36 H 0.04 0.60 6.40 -51.93 -0.33 0.27 16 37 H 0.12 1.61 6.15 -52.48 -0.32 1.28 16 38 H 0.12 1.22 8.06 -52.49 -0.42 0.79 16 39 H 0.11 1.12 8.06 -52.48 -0.42 0.70 16 40 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 41 H 0.12 1.79 8.06 -52.49 -0.42 1.37 16 42 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 43 H 0.11 2.57 4.35 -51.93 -0.23 2.35 16 LS Contribution 330.38 15.07 4.98 4.98 Total: -1.00 -27.99 330.38 -10.90 -38.89 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: -6.70 Total: 4.04 kcal Atomic # 6 Polarization: -13.93 SS G_CDS: -2.54 Total: -16.47 kcal Atomic # 7 Polarization: -45.94 SS G_CDS: -1.61 Total: -47.55 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -27.99 -10.90 -38.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255432300.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.967 kcal (2) G-P(sol) polarization free energy of solvation -27.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.892 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds