Wall clock time and date at job start Mon Mar 30 2020 01:21:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.47903 * 110.99893 * 2 1 4 4 C 1.53992 * 107.05913 * 214.15928 * 3 2 1 5 5 C 1.54595 * 105.14100 * 1.22585 * 4 3 2 6 6 H 1.09003 * 110.72406 * 263.42572 * 5 4 3 7 7 N 1.46898 * 110.72565 * 140.31944 * 5 4 3 8 8 C 1.46903 * 110.99759 * 292.33335 * 7 5 4 9 9 C 1.50698 * 109.47021 * 271.12801 * 8 7 5 10 10 H 1.07993 * 120.00342 * 354.69829 * 9 8 7 11 11 C 1.37876 * 119.99821 * 174.69074 * 9 8 7 12 12 N 1.31520 * 120.00350 * 0.02562 * 11 9 8 13 13 Si 1.86796 * 119.99867 * 180.02562 * 11 9 8 14 14 H 1.48493 * 109.47283 * 60.00555 * 13 11 9 15 15 H 1.48507 * 109.46874 * 180.02562 * 13 11 9 16 16 H 1.48504 * 109.47169 * 300.00002 * 13 11 9 17 17 C 1.46901 * 110.99913 * 56.28434 * 7 5 4 18 18 C 1.50702 * 109.47144 * 66.54543 * 17 7 5 19 19 C 1.38232 * 119.99859 * 269.23432 * 18 17 7 20 20 C 1.38235 * 119.99996 * 179.76774 * 19 18 17 21 21 C 1.38240 * 119.99476 * 0.47900 * 20 19 18 22 22 C 1.38229 * 120.00268 * 359.78956 * 21 20 19 23 23 C 1.38230 * 120.00183 * 359.95961 * 22 21 20 24 24 C 1.48537 * 110.99879 * 242.60747 * 2 1 3 25 25 H 1.08996 * 109.47407 * 59.87455 * 1 2 3 26 26 H 1.09003 * 109.46953 * 179.86829 * 1 2 3 27 27 H 1.08991 * 109.47106 * 299.86761 * 1 2 3 28 28 H 1.09006 * 109.91756 * 333.51542 * 3 2 1 29 29 H 1.09007 * 109.91253 * 94.80363 * 3 2 1 30 30 H 1.08996 * 110.31095 * 120.14589 * 4 3 2 31 31 H 1.09004 * 110.30359 * 242.20963 * 4 3 2 32 32 H 1.09000 * 109.47006 * 31.12840 * 8 7 5 33 33 H 1.09000 * 109.46978 * 151.12643 * 8 7 5 34 34 H 0.96993 * 120.00148 * 179.97438 * 12 11 9 35 35 H 1.09005 * 109.47163 * 186.54504 * 17 7 5 36 36 H 1.08996 * 109.47368 * 306.54280 * 17 7 5 37 37 H 1.08004 * 120.00286 * 359.97438 * 19 18 17 38 38 H 1.08001 * 120.00423 * 180.24936 * 20 19 18 39 39 H 1.08007 * 119.99457 * 179.77499 * 21 20 19 40 40 H 1.08001 * 119.99633 * 179.97438 * 22 21 20 41 41 H 1.07995 * 120.00366 * 179.97438 * 23 22 21 42 42 H 1.08994 * 110.66876 * 278.15115 * 24 2 1 43 43 H 1.09006 * 110.66789 * 41.28733 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9990 1.3808 0.0000 4 6 3.2982 1.3660 -0.8266 5 6 3.4491 -0.0928 -1.3155 6 1 4.1140 -0.6531 -0.6581 7 7 3.9385 -0.1290 -2.7001 8 6 2.9294 0.3970 -3.6291 9 6 2.0297 -0.7243 -4.0810 10 1 2.2422 -1.7404 -3.7835 11 6 0.9351 -0.4527 -4.8741 12 7 0.6764 0.7847 -5.2368 13 14 -0.1806 -1.8425 -5.4337 14 1 -0.7578 -2.5225 -4.2465 15 1 -1.2766 -1.2911 -6.2704 16 1 0.6060 -2.8187 -6.2298 17 6 5.2057 0.6026 -2.8299 18 6 6.2830 -0.1182 -2.0611 19 6 6.5187 0.2013 -0.7370 20 6 7.5036 -0.4632 -0.0304 21 6 8.2594 -1.4403 -0.6509 22 6 8.0275 -1.7559 -1.9765 23 6 7.0391 -1.0950 -2.6816 24 6 2.0013 -0.6380 -1.2312 25 1 -0.3634 0.5158 -0.8888 26 1 -0.3633 -1.0277 -0.0024 27 1 -0.3633 0.5117 0.8911 28 1 1.2757 2.0562 -0.4570 29 1 2.2122 1.6966 1.0213 30 1 3.2136 2.0431 -1.6766 31 1 4.1467 1.6473 -0.2028 32 1 2.3349 1.1596 -3.1259 33 1 3.4259 0.8358 -4.4945 34 1 -0.0935 0.9757 -5.7950 35 1 5.4863 0.6598 -3.8817 36 1 5.0863 1.6098 -2.4305 37 1 5.9311 0.9678 -0.2535 38 1 7.6850 -0.2165 1.0053 39 1 9.0314 -1.9570 -0.0998 40 1 8.6183 -2.5190 -2.4613 41 1 6.8581 -1.3412 -3.7174 42 1 2.0042 -1.7234 -1.1317 43 1 1.4237 -0.3321 -2.1036 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255432300.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:40 Heat of formation + Delta-G solvation = 26.772824 kcal Electronic energy + Delta-G solvation = -22001.305991 eV Core-core repulsion = 19045.711841 eV Total energy + Delta-G solvation = -2955.594150 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.97679 -39.65499 -37.12917 -34.84306 -32.71781 -31.94745 -31.53380 -29.42160 -29.00768 -26.43494 -25.69856 -23.91579 -23.33020 -22.33721 -21.64922 -20.22483 -18.46435 -17.63259 -17.49013 -16.85956 -16.48653 -15.96720 -15.86818 -15.71540 -14.87027 -14.75156 -14.67181 -14.36439 -14.09677 -13.89256 -13.74278 -13.39865 -13.13960 -12.96167 -12.81528 -12.51634 -12.46147 -12.36115 -12.28816 -12.08922 -11.93718 -11.77055 -11.71952 -11.35093 -11.14865 -10.57099 -9.70307 -9.58181 -9.36969 -8.92672 -8.15831 -6.21791 0.54177 0.61504 1.39801 1.40962 1.48791 2.39621 2.87833 3.11456 3.14073 3.50914 3.78557 3.89451 3.96092 4.08000 4.12175 4.26554 4.35482 4.41418 4.44679 4.50563 4.59356 4.64807 4.69602 4.75487 4.81040 4.85543 4.90564 4.94927 5.05811 5.13525 5.17760 5.21452 5.27362 5.30289 5.43488 5.66418 5.70621 5.71245 5.85494 5.89794 6.09788 6.13931 6.23029 6.45633 6.61534 6.89714 7.42950 8.91811 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.016131 B = 0.006317 C = 0.005115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1735.364950 B = 4431.602876 C = 5472.555144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.526 5.526 3 C 0.043 3.957 4 C -0.155 4.155 5 C 0.101 3.899 6 H 0.087 0.913 7 N -0.528 5.528 8 C 0.207 3.793 9 C -0.497 4.497 10 H 0.057 0.943 11 C 0.007 3.993 12 N -0.932 5.932 13 Si 0.953 3.047 14 H -0.269 1.269 15 H -0.285 1.285 16 H -0.271 1.271 17 C 0.093 3.907 18 C -0.080 4.080 19 C -0.124 4.124 20 C -0.124 4.124 21 C -0.127 4.127 22 C -0.126 4.126 23 C -0.119 4.119 24 C 0.028 3.972 25 H 0.008 0.992 26 H 0.069 0.931 27 H 0.087 0.913 28 H 0.029 0.971 29 H 0.098 0.902 30 H 0.048 0.952 31 H 0.089 0.911 32 H -0.015 1.015 33 H -0.007 1.007 34 H 0.262 0.738 35 H 0.065 0.935 36 H 0.039 0.961 37 H 0.123 0.877 38 H 0.144 0.856 39 H 0.146 0.854 40 H 0.139 0.861 41 H 0.114 0.886 42 H 0.063 0.937 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.218 -1.017 11.512 15.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.251 5.251 3 C -0.085 4.085 4 C -0.195 4.195 5 C -0.009 4.009 6 H 0.105 0.895 7 N -0.251 5.251 8 C 0.081 3.919 9 C -0.536 4.536 10 H 0.075 0.925 11 C -0.191 4.191 12 N -0.573 5.573 13 Si 0.778 3.222 14 H -0.195 1.195 15 H -0.211 1.211 16 H -0.196 1.196 17 C -0.034 4.034 18 C -0.080 4.080 19 C -0.142 4.142 20 C -0.142 4.142 21 C -0.145 4.145 22 C -0.144 4.144 23 C -0.137 4.137 24 C -0.099 4.099 25 H 0.027 0.973 26 H 0.088 0.912 27 H 0.106 0.894 28 H 0.047 0.953 29 H 0.116 0.884 30 H 0.066 0.934 31 H 0.107 0.893 32 H 0.003 0.997 33 H 0.011 0.989 34 H 0.071 0.929 35 H 0.083 0.917 36 H 0.057 0.943 37 H 0.141 0.859 38 H 0.161 0.839 39 H 0.164 0.836 40 H 0.157 0.843 41 H 0.132 0.868 42 H 0.082 0.918 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 10.321 -1.687 11.732 15.716 hybrid contribution -1.455 0.907 -1.476 2.262 sum 8.866 -0.780 10.256 13.579 Atomic orbital electron populations 1.22487 0.87735 1.02220 1.00425 1.64790 1.08508 1.14863 1.36895 1.22796 0.95259 0.89764 1.00722 1.23023 0.98504 0.98572 0.99379 1.22415 0.95090 0.94177 0.89204 0.89510 1.62218 1.03374 1.54797 1.04760 1.19452 0.89117 0.93792 0.89513 1.21303 1.08778 0.94303 1.29210 0.92452 1.25713 0.99259 0.97622 0.96503 1.70058 1.29325 1.20147 1.37813 0.85679 0.78379 0.79589 0.78518 1.19454 1.21103 1.19594 1.21056 0.88778 0.94441 0.99123 1.19803 0.95941 0.97402 0.94896 1.21230 0.98671 1.00788 0.93526 1.21400 0.95590 0.96500 1.00690 1.21453 1.00239 0.97934 0.94865 1.21383 0.97816 0.99946 0.95236 1.21158 0.96127 0.96066 1.00396 1.23602 0.95714 0.98706 0.91905 0.97342 0.91219 0.89423 0.95258 0.88395 0.93353 0.89273 0.99680 0.98915 0.92945 0.91699 0.94301 0.85943 0.83870 0.83611 0.84318 0.86839 0.91807 0.91261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.65 9.40 127.69 1.20 1.85 16 2 N -0.53 -18.57 5.55 -909.14 -5.05 -23.62 16 3 C 0.04 1.38 6.70 86.45 0.58 1.96 16 4 C -0.16 -5.22 4.76 31.47 0.15 -5.07 16 5 C 0.10 3.83 2.70 46.12 0.12 3.96 16 6 H 0.09 3.20 6.75 -2.39 -0.02 3.18 16 7 N -0.53 -22.45 4.50 -873.00 -3.93 -26.38 16 8 C 0.21 10.65 4.07 85.56 0.35 11.00 16 9 C -0.50 -27.38 6.55 25.60 0.17 -27.21 16 10 H 0.06 3.19 7.78 -2.91 -0.02 3.16 16 11 C 0.01 0.38 5.46 84.65 0.46 0.85 16 12 N -0.93 -55.02 13.29 21.45 0.28 -54.74 16 13 Si 0.95 44.14 29.54 68.60 2.03 46.17 16 14 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 15 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 16 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 17 C 0.09 3.40 4.79 85.56 0.41 3.81 16 18 C -0.08 -2.50 4.89 -19.87 -0.10 -2.59 16 19 C -0.12 -3.31 8.22 22.27 0.18 -3.12 16 20 C -0.12 -2.74 10.05 22.27 0.22 -2.52 16 21 C -0.13 -2.66 10.05 22.27 0.22 -2.44 16 22 C -0.13 -3.00 10.05 22.27 0.22 -2.77 16 23 C -0.12 -3.51 9.70 22.27 0.22 -3.29 16 24 C 0.03 1.17 5.21 86.65 0.45 1.62 16 25 H 0.01 0.30 8.00 -2.39 -0.02 0.28 16 26 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 27 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 28 H 0.03 1.01 7.73 -2.38 -0.02 0.99 16 29 H 0.10 2.59 8.14 -2.38 -0.02 2.57 16 30 H 0.05 1.85 5.97 -2.39 -0.01 1.83 16 31 H 0.09 2.47 6.35 -2.39 -0.02 2.45 16 32 H -0.01 -0.80 5.76 -2.39 -0.01 -0.82 16 33 H -0.01 -0.40 7.51 -2.39 -0.02 -0.42 16 34 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16 35 H 0.06 2.46 7.72 -2.38 -0.02 2.45 16 36 H 0.04 1.36 6.40 -2.39 -0.02 1.35 16 37 H 0.12 3.06 6.15 -2.91 -0.02 3.04 16 38 H 0.14 2.35 8.06 -2.91 -0.02 2.33 16 39 H 0.15 2.14 8.06 -2.91 -0.02 2.12 16 40 H 0.14 2.60 8.06 -2.91 -0.02 2.58 16 41 H 0.11 3.42 8.06 -2.91 -0.02 3.40 16 42 H 0.06 2.69 8.14 -2.39 -0.02 2.67 16 43 H 0.07 3.45 4.35 -2.38 -0.01 3.44 16 Total: -1.00 -61.97 330.38 -0.82 -62.79 By element: Atomic # 1 Polarization: 18.77 SS G_CDS: 0.98 Total: 19.75 kcal Atomic # 6 Polarization: -28.84 SS G_CDS: 4.87 Total: -23.98 kcal Atomic # 7 Polarization: -96.04 SS G_CDS: -8.70 Total: -104.73 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Total: -61.97 -0.82 -62.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255432300.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.566 kcal (2) G-P(sol) polarization free energy of solvation -61.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.793 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds