Wall clock time and date at job start Mon Mar 30 2020 01:13:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09007 * 109.47231 * 2 1 4 4 C 1.53002 * 109.47241 * 119.99984 * 2 1 3 5 5 C 1.50702 * 109.47139 * 186.90657 * 4 2 1 6 6 C 1.38227 * 119.62035 * 122.38319 * 5 4 2 7 7 C 1.38627 * 119.16141 * 179.78981 * 6 5 4 8 8 C 1.38673 * 118.42010 * 0.47611 * 7 6 5 9 9 C 1.38178 * 119.16171 * 359.49839 * 8 7 6 10 10 N 1.31855 * 119.61701 * 302.40310 * 5 4 2 11 11 N 1.46901 * 109.47130 * 240.00000 * 2 1 3 12 12 C 1.46902 * 110.99963 * 89.06817 * 11 2 1 13 13 H 1.08994 * 109.40947 * 324.86002 * 12 11 2 14 14 C 1.52965 * 109.41120 * 84.64738 * 12 11 2 15 15 C 1.53234 * 109.40137 * 183.70447 * 14 12 11 16 16 C 1.51269 * 108.53514 * 305.37146 * 15 14 12 17 17 C 1.37877 * 120.85045 * 231.36748 * 16 15 14 18 18 N 1.31511 * 120.00046 * 179.97438 * 17 16 15 19 19 Si 1.86802 * 119.99859 * 359.97438 * 17 16 15 20 20 H 1.48505 * 109.47082 * 89.99803 * 19 17 16 21 21 H 1.48497 * 109.46812 * 209.99530 * 19 17 16 22 22 H 1.48501 * 109.46844 * 329.99617 * 19 17 16 23 23 C 1.51278 * 118.30098 * 51.34753 * 16 15 14 24 24 C 1.52960 * 109.41183 * 204.99772 * 12 11 2 25 25 H 1.09007 * 109.47231 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.47290 * 299.99573 * 1 2 3 27 27 H 1.09000 * 109.47320 * 60.00297 * 1 2 3 28 28 H 1.08997 * 109.47424 * 66.90774 * 4 2 1 29 29 H 1.09003 * 109.47268 * 306.90324 * 4 2 1 30 30 H 1.08005 * 120.41671 * 0.03697 * 6 5 4 31 31 H 1.08000 * 120.78812 * 180.23035 * 7 6 5 32 32 H 1.07994 * 120.41503 * 179.78162 * 8 7 6 33 33 H 1.08004 * 119.61600 * 180.25444 * 9 8 7 34 34 H 1.00906 * 111.00036 * 213.01635 * 11 2 1 35 35 H 1.09003 * 109.48373 * 303.68069 * 14 12 11 36 36 H 1.08997 * 109.48227 * 63.72433 * 14 12 11 37 37 H 1.08992 * 109.62432 * 185.66096 * 15 14 12 38 38 H 1.08997 * 109.78312 * 65.17328 * 15 14 12 39 39 H 0.96999 * 119.99982 * 180.02562 * 18 17 16 40 40 H 1.09003 * 109.62068 * 188.93627 * 23 16 15 41 41 H 1.09003 * 109.62126 * 68.36695 * 23 16 15 42 42 H 1.09000 * 109.48280 * 296.27538 * 24 12 11 43 43 H 1.08997 * 109.48209 * 56.30063 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5373 -0.5750 1.3376 6 6 4.1025 -0.0005 2.4606 7 6 5.4811 0.1254 2.5338 8 6 6.2425 -0.3243 1.4656 9 6 5.6070 -0.8884 0.3760 10 7 4.2930 -0.9962 0.3426 11 7 2.0196 -0.6925 -1.1994 12 6 2.1741 0.2432 -2.3214 13 1 1.3881 0.9969 -2.2752 14 6 3.5390 0.9274 -2.2284 15 6 3.6628 1.9699 -3.3447 16 6 3.3951 1.2902 -4.6693 17 6 4.2771 1.4194 -5.7212 18 7 4.0280 0.8208 -6.8654 19 14 5.8256 2.4448 -5.5211 20 1 6.9293 1.5832 -5.0260 21 1 6.2046 3.0299 -6.8323 22 1 5.5740 3.5362 -4.5461 23 6 2.1353 0.4647 -4.8102 24 6 2.0669 -0.5231 -3.6408 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8900 28 1 1.7811 -1.7784 1.1897 29 1 1.5793 -0.2837 2.1350 30 1 3.4781 0.3424 3.2725 31 1 5.9507 0.5668 3.4004 32 1 7.3189 -0.2388 1.4871 33 1 6.1932 -1.2449 -0.4582 34 1 2.8849 -1.1758 -1.0100 35 1 3.6342 1.4187 -1.2601 36 1 4.3272 0.1826 -2.3375 37 1 4.6692 2.3884 -3.3447 38 1 2.9351 2.7662 -3.1882 39 1 4.6487 0.9113 -7.6053 40 1 2.1604 -0.0837 -5.7518 41 1 1.2642 1.1196 -4.7877 42 1 2.8900 -1.2336 -3.7165 43 1 1.1190 -1.0602 -3.6734 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001256398521.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:35 Heat of formation + Delta-G solvation = 15.675437 kcal Electronic energy + Delta-G solvation = -21867.867104 eV Core-core repulsion = 18911.791735 eV Total energy + Delta-G solvation = -2956.075369 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.36556 -37.77644 -35.47054 -32.70164 -32.46289 -31.42153 -29.69141 -29.31382 -26.97476 -26.01048 -23.56141 -22.49045 -21.59055 -21.06915 -20.08401 -19.10292 -16.89058 -16.36194 -16.09761 -15.58008 -15.23567 -14.53745 -14.29394 -13.89152 -13.78275 -13.29706 -12.84365 -12.78505 -12.64798 -12.20193 -12.07716 -12.01507 -11.89910 -11.77618 -11.31813 -11.06200 -10.93432 -10.77981 -10.65115 -10.20960 -10.03272 -9.88845 -9.68623 -9.49187 -9.30637 -8.97744 -8.73436 -8.58716 -8.37394 -7.48584 -6.00436 -3.89443 1.06508 1.22275 3.30159 3.38557 3.40837 3.74745 4.22863 4.45211 4.57088 4.79460 4.85435 4.97929 5.05452 5.23943 5.27415 5.35840 5.49637 5.61203 5.70486 5.83285 5.92932 5.95824 6.05318 6.08293 6.09917 6.13977 6.30868 6.44659 6.53010 6.64185 6.68662 6.91546 6.98805 7.08160 7.14230 7.16197 7.36866 7.53383 7.75083 7.86943 7.91713 7.97492 8.04196 8.42687 8.53642 9.08788 9.64815 11.09400 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.017503 B = 0.006112 C = 0.004891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.344737 B = 4580.226552 C = 5723.846045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.091 3.909 3 H 0.039 0.961 4 C -0.077 4.077 5 C 0.133 3.867 6 C -0.175 4.175 7 C -0.074 4.074 8 C -0.182 4.182 9 C 0.112 3.888 10 N -0.473 5.473 11 N -0.692 5.692 12 C 0.103 3.897 13 H 0.056 0.944 14 C -0.122 4.122 15 C -0.013 4.013 16 C -0.481 4.481 17 C 0.074 3.926 18 N -0.892 5.892 19 Si 0.886 3.114 20 H -0.280 1.280 21 H -0.291 1.291 22 H -0.269 1.269 23 C 0.009 3.991 24 C -0.091 4.091 25 H 0.059 0.941 26 H 0.046 0.954 27 H 0.057 0.943 28 H 0.090 0.910 29 H 0.081 0.919 30 H 0.131 0.869 31 H 0.131 0.869 32 H 0.132 0.868 33 H 0.157 0.843 34 H 0.361 0.639 35 H 0.018 0.982 36 H 0.051 0.949 37 H 0.024 0.976 38 H 0.012 0.988 39 H 0.262 0.738 40 H 0.056 0.944 41 H 0.001 0.999 42 H 0.045 0.955 43 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.466 -2.393 19.081 19.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.020 4.020 3 H 0.057 0.943 4 C -0.115 4.115 5 C -0.005 4.005 6 C -0.195 4.195 7 C -0.100 4.100 8 C -0.202 4.202 9 C -0.045 4.045 10 N -0.183 5.183 11 N -0.331 5.331 12 C -0.006 4.006 13 H 0.075 0.925 14 C -0.161 4.161 15 C -0.051 4.051 16 C -0.500 4.500 17 C -0.128 4.128 18 N -0.530 5.530 19 Si 0.714 3.286 20 H -0.206 1.206 21 H -0.217 1.217 22 H -0.195 1.195 23 C -0.029 4.029 24 C -0.130 4.130 25 H 0.078 0.922 26 H 0.065 0.935 27 H 0.076 0.924 28 H 0.108 0.892 29 H 0.099 0.901 30 H 0.149 0.851 31 H 0.149 0.851 32 H 0.150 0.850 33 H 0.174 0.826 34 H 0.188 0.812 35 H 0.037 0.963 36 H 0.070 0.930 37 H 0.042 0.958 38 H 0.031 0.969 39 H 0.072 0.928 40 H 0.074 0.926 41 H 0.019 0.981 42 H 0.064 0.936 43 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -0.467 -3.040 17.985 18.246 hybrid contribution 2.325 1.541 1.092 2.996 sum 1.859 -1.499 19.077 19.226 Atomic orbital electron populations 1.21800 0.94951 1.01952 1.00839 1.21328 0.95262 0.95939 0.89435 0.94308 1.20881 0.88271 1.02976 0.99353 1.21400 0.96638 0.93015 0.89420 1.21939 0.95684 1.02240 0.99652 1.21544 0.93857 0.96370 0.98229 1.22109 1.01372 1.01339 0.95389 1.22826 0.90413 0.94206 0.97066 1.67184 1.06521 1.17256 1.27315 1.61032 1.38520 1.29166 1.04337 1.21409 0.95585 0.92778 0.90812 0.92538 1.22115 0.97973 0.99357 0.96695 1.19717 0.96353 0.94339 0.94730 1.20066 1.06086 1.29003 0.94844 1.24829 0.97596 0.95415 0.94969 1.69842 1.36961 1.43303 1.02884 0.86704 0.83809 0.81129 0.76939 1.20585 1.21713 1.19469 1.19399 0.94527 0.94007 0.94988 1.21540 0.98706 0.98259 0.94477 0.92233 0.93463 0.92426 0.89179 0.90085 0.85078 0.85138 0.84963 0.82568 0.81234 0.96344 0.93006 0.95790 0.96948 0.92774 0.92576 0.98100 0.93587 0.94727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 9.45 37.15 0.35 -1.46 16 2 C 0.09 1.36 2.37 -67.71 -0.16 1.20 16 3 H 0.04 0.64 7.08 -51.92 -0.37 0.27 16 4 C -0.08 -0.92 5.21 -27.88 -0.15 -1.07 16 5 C 0.13 1.73 6.14 -82.58 -0.51 1.23 16 6 C -0.18 -1.89 9.71 -39.44 -0.38 -2.27 16 7 C -0.07 -0.74 10.18 -39.28 -0.40 -1.14 16 8 C -0.18 -1.95 10.11 -39.44 -0.40 -2.35 16 9 C 0.11 1.45 11.18 -17.55 -0.20 1.26 16 10 N -0.47 -6.98 7.49 -9.47 -0.07 -7.05 16 11 N -0.69 -12.39 6.05 -99.78 -0.60 -12.99 16 12 C 0.10 2.15 2.18 -67.75 -0.15 2.00 16 13 H 0.06 1.22 7.42 -51.93 -0.39 0.83 16 14 C -0.12 -2.66 5.18 -26.63 -0.14 -2.80 16 15 C -0.01 -0.33 5.59 -27.48 -0.15 -0.48 16 16 C -0.48 -13.21 5.51 -98.92 -0.55 -13.76 16 17 C 0.07 2.09 5.46 -17.82 -0.10 1.99 16 18 N -0.89 -26.46 12.73 55.43 0.71 -25.75 16 19 Si 0.89 21.86 27.27 -169.99 -4.64 17.23 16 20 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 22 H -0.27 -6.51 6.46 56.52 0.37 -6.14 16 23 C 0.01 0.23 5.97 -27.48 -0.16 0.06 16 24 C -0.09 -2.11 5.54 -26.64 -0.15 -2.25 16 25 H 0.06 0.76 8.14 -51.92 -0.42 0.34 16 26 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.84 7.73 -51.93 -0.40 0.44 16 28 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.08 0.76 7.86 -51.93 -0.41 0.35 16 30 H 0.13 1.08 7.94 -52.48 -0.42 0.66 16 31 H 0.13 0.93 8.06 -52.49 -0.42 0.50 16 32 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 33 H 0.16 1.83 8.06 -52.48 -0.42 1.41 16 34 H 0.36 6.55 5.11 -39.29 -0.20 6.35 16 35 H 0.02 0.38 7.42 -51.93 -0.39 -0.01 16 36 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.02 0.59 4.78 -51.93 -0.25 0.34 16 38 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 39 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 40 H 0.06 1.60 7.07 -51.93 -0.37 1.23 16 41 H 0.00 0.02 8.14 -51.93 -0.42 -0.41 16 42 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 43 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 334.03 15.07 5.03 5.03 Total: -1.00 -30.45 334.03 -9.81 -40.25 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: -7.00 Total: 3.11 kcal Atomic # 6 Polarization: -16.60 SS G_CDS: -3.23 Total: -19.83 kcal Atomic # 7 Polarization: -45.82 SS G_CDS: 0.03 Total: -45.79 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.64 Total: 17.23 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -30.45 -9.81 -40.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256398521.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.927 kcal (2) G-P(sol) polarization free energy of solvation -30.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.252 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds