Wall clock time and date at job start Mon Mar 30 2020 01:13:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09007 * 109.47231 * 2 1 4 4 C 1.53002 * 109.47241 * 119.99984 * 2 1 3 5 5 C 1.50702 * 109.47139 * 186.90657 * 4 2 1 6 6 C 1.38227 * 119.62035 * 122.38319 * 5 4 2 7 7 C 1.38627 * 119.16141 * 179.78981 * 6 5 4 8 8 C 1.38673 * 118.42010 * 0.47611 * 7 6 5 9 9 C 1.38178 * 119.16171 * 359.49839 * 8 7 6 10 10 N 1.31855 * 119.61701 * 302.40310 * 5 4 2 11 11 N 1.46901 * 109.47130 * 240.00000 * 2 1 3 12 12 C 1.46902 * 110.99963 * 89.06817 * 11 2 1 13 13 H 1.08994 * 109.40947 * 324.86002 * 12 11 2 14 14 C 1.52965 * 109.41120 * 84.64738 * 12 11 2 15 15 C 1.53234 * 109.40137 * 183.70447 * 14 12 11 16 16 C 1.51269 * 108.53514 * 305.37146 * 15 14 12 17 17 C 1.37877 * 120.85045 * 231.36748 * 16 15 14 18 18 N 1.31511 * 120.00046 * 179.97438 * 17 16 15 19 19 Si 1.86802 * 119.99859 * 359.97438 * 17 16 15 20 20 H 1.48505 * 109.47082 * 89.99803 * 19 17 16 21 21 H 1.48497 * 109.46812 * 209.99530 * 19 17 16 22 22 H 1.48501 * 109.46844 * 329.99617 * 19 17 16 23 23 C 1.51278 * 118.30098 * 51.34753 * 16 15 14 24 24 C 1.52960 * 109.41183 * 204.99772 * 12 11 2 25 25 H 1.09007 * 109.47231 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.47290 * 299.99573 * 1 2 3 27 27 H 1.09000 * 109.47320 * 60.00297 * 1 2 3 28 28 H 1.08997 * 109.47424 * 66.90774 * 4 2 1 29 29 H 1.09003 * 109.47268 * 306.90324 * 4 2 1 30 30 H 1.08005 * 120.41671 * 0.03697 * 6 5 4 31 31 H 1.08000 * 120.78812 * 180.23035 * 7 6 5 32 32 H 1.07994 * 120.41503 * 179.78162 * 8 7 6 33 33 H 1.08004 * 119.61600 * 180.25444 * 9 8 7 34 34 H 1.00906 * 111.00036 * 213.01635 * 11 2 1 35 35 H 1.09003 * 109.48373 * 303.68069 * 14 12 11 36 36 H 1.08997 * 109.48227 * 63.72433 * 14 12 11 37 37 H 1.08992 * 109.62432 * 185.66096 * 15 14 12 38 38 H 1.08997 * 109.78312 * 65.17328 * 15 14 12 39 39 H 0.96999 * 119.99982 * 180.02562 * 18 17 16 40 40 H 1.09003 * 109.62068 * 188.93627 * 23 16 15 41 41 H 1.09003 * 109.62126 * 68.36695 * 23 16 15 42 42 H 1.09000 * 109.48280 * 296.27538 * 24 12 11 43 43 H 1.08997 * 109.48209 * 56.30063 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5373 -0.5750 1.3376 6 6 4.1025 -0.0005 2.4606 7 6 5.4811 0.1254 2.5338 8 6 6.2425 -0.3243 1.4656 9 6 5.6070 -0.8884 0.3760 10 7 4.2930 -0.9962 0.3426 11 7 2.0196 -0.6925 -1.1994 12 6 2.1741 0.2432 -2.3214 13 1 1.3881 0.9969 -2.2752 14 6 3.5390 0.9274 -2.2284 15 6 3.6628 1.9699 -3.3447 16 6 3.3951 1.2902 -4.6693 17 6 4.2771 1.4194 -5.7212 18 7 4.0280 0.8208 -6.8654 19 14 5.8256 2.4448 -5.5211 20 1 6.9293 1.5832 -5.0260 21 1 6.2046 3.0299 -6.8323 22 1 5.5740 3.5362 -4.5461 23 6 2.1353 0.4647 -4.8102 24 6 2.0669 -0.5231 -3.6408 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8900 28 1 1.7811 -1.7784 1.1897 29 1 1.5793 -0.2837 2.1350 30 1 3.4781 0.3424 3.2725 31 1 5.9507 0.5668 3.4004 32 1 7.3189 -0.2388 1.4871 33 1 6.1932 -1.2449 -0.4582 34 1 2.8849 -1.1758 -1.0100 35 1 3.6342 1.4187 -1.2601 36 1 4.3272 0.1826 -2.3375 37 1 4.6692 2.3884 -3.3447 38 1 2.9351 2.7662 -3.1882 39 1 4.6487 0.9113 -7.6053 40 1 2.1604 -0.0837 -5.7518 41 1 1.2642 1.1196 -4.7877 42 1 2.8900 -1.2336 -3.7165 43 1 1.1190 -1.0602 -3.6734 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001256398521.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:35 Heat of formation + Delta-G solvation = -1.948420 kcal Electronic energy + Delta-G solvation = -21868.631332 eV Core-core repulsion = 18911.791735 eV Total energy + Delta-G solvation = -2956.839596 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.25982 -39.35104 -36.97218 -34.42480 -33.31272 -32.72567 -31.49879 -30.98811 -27.98077 -27.70678 -24.45722 -23.85547 -23.13995 -22.90553 -21.30272 -20.91694 -18.11815 -17.71101 -17.24704 -16.56368 -16.44326 -16.34836 -15.95273 -15.04579 -14.95700 -14.68333 -14.51037 -14.20137 -14.02837 -13.91579 -13.69910 -13.28588 -13.08645 -12.84836 -12.77125 -12.71973 -12.67802 -12.21479 -12.11569 -11.91149 -11.76658 -11.57801 -11.41002 -10.76317 -10.76065 -10.60293 -10.53724 -10.25531 -9.83492 -8.97107 -8.16843 -6.10459 0.21956 0.41456 1.34052 1.36187 1.45908 2.38797 2.87470 3.08186 3.33822 3.57355 3.79796 4.04022 4.09150 4.17223 4.27405 4.28546 4.31834 4.42842 4.55217 4.60157 4.72931 4.77105 4.80665 4.91686 4.95793 4.98518 5.00880 5.08769 5.12521 5.19036 5.21121 5.26719 5.30602 5.37320 5.45561 5.51768 5.56570 5.62521 5.78937 5.82189 5.88095 6.37214 6.45431 6.94593 6.95492 7.15016 7.46433 8.94438 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.017503 B = 0.006112 C = 0.004891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.344737 B = 4580.226552 C = 5723.846045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.089 3.911 3 H 0.024 0.976 4 C -0.069 4.069 5 C 0.107 3.893 6 C -0.172 4.172 7 C -0.074 4.074 8 C -0.179 4.179 9 C 0.082 3.918 10 N -0.508 5.508 11 N -0.694 5.694 12 C 0.116 3.884 13 H 0.051 0.949 14 C -0.105 4.105 15 C -0.015 4.015 16 C -0.495 4.495 17 C 0.019 3.981 18 N -0.932 5.932 19 Si 0.942 3.058 20 H -0.273 1.273 21 H -0.289 1.289 22 H -0.258 1.258 23 C 0.007 3.993 24 C -0.081 4.081 25 H 0.061 0.939 26 H 0.077 0.923 27 H 0.037 0.963 28 H 0.087 0.913 29 H 0.115 0.885 30 H 0.161 0.839 31 H 0.164 0.836 32 H 0.156 0.844 33 H 0.154 0.846 34 H 0.360 0.640 35 H 0.032 0.968 36 H 0.039 0.961 37 H 0.025 0.975 38 H 0.014 0.986 39 H 0.263 0.737 40 H 0.024 0.976 41 H -0.003 1.003 42 H 0.029 0.971 43 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.969 -1.497 22.503 22.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.022 4.022 3 H 0.043 0.957 4 C -0.107 4.107 5 C -0.030 4.030 6 C -0.191 4.191 7 C -0.100 4.100 8 C -0.199 4.199 9 C -0.074 4.074 10 N -0.218 5.218 11 N -0.332 5.332 12 C 0.006 3.994 13 H 0.069 0.931 14 C -0.145 4.145 15 C -0.053 4.053 16 C -0.514 4.514 17 C -0.179 4.179 18 N -0.572 5.572 19 Si 0.768 3.232 20 H -0.199 1.199 21 H -0.215 1.215 22 H -0.182 1.182 23 C -0.031 4.031 24 C -0.119 4.119 25 H 0.081 0.919 26 H 0.096 0.904 27 H 0.056 0.944 28 H 0.106 0.894 29 H 0.133 0.867 30 H 0.178 0.822 31 H 0.182 0.818 32 H 0.173 0.827 33 H 0.171 0.829 34 H 0.187 0.813 35 H 0.051 0.949 36 H 0.058 0.942 37 H 0.044 0.956 38 H 0.032 0.968 39 H 0.072 0.928 40 H 0.043 0.957 41 H 0.015 0.985 42 H 0.048 0.952 43 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 0.032 -2.144 21.431 21.538 hybrid contribution 2.121 1.239 0.061 2.457 sum 2.154 -0.905 21.492 21.619 Atomic orbital electron populations 1.21773 0.93635 1.02306 1.01372 1.21444 0.96209 0.95154 0.89381 0.95750 1.20860 0.88142 1.02680 0.98999 1.21652 0.96935 0.94213 0.90211 1.22283 0.96542 1.00860 0.99448 1.21986 0.93693 0.95495 0.98848 1.22389 1.02700 1.00087 0.94725 1.22981 0.90321 0.95778 0.98315 1.67052 1.07474 1.18520 1.28796 1.60987 1.38548 1.28632 1.05058 1.21119 0.94781 0.92646 0.90870 0.93056 1.21912 0.98152 0.98234 0.96163 1.19734 0.96404 0.94891 0.94247 1.20615 1.06105 1.28663 0.96046 1.25625 1.00774 0.96738 0.94734 1.69981 1.38254 1.45172 1.03765 0.85792 0.80311 0.79984 0.77129 1.19882 1.21526 1.18218 1.19352 0.94408 0.94378 0.94944 1.21361 0.98500 0.97305 0.94749 0.91943 0.90445 0.94398 0.89435 0.86693 0.82175 0.81810 0.82668 0.82882 0.81264 0.94924 0.94188 0.95606 0.96779 0.92832 0.95738 0.98495 0.95223 0.93740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.21 9.45 71.98 0.68 -2.53 16 2 C 0.09 2.47 2.37 44.91 0.11 2.57 16 3 H 0.02 0.76 7.08 -2.38 -0.02 0.74 16 4 C -0.07 -1.47 5.21 29.85 0.16 -1.32 16 5 C 0.11 2.57 6.14 42.55 0.26 2.83 16 6 C -0.17 -3.10 9.71 22.36 0.22 -2.88 16 7 C -0.07 -1.21 10.18 22.47 0.23 -0.98 16 8 C -0.18 -3.42 10.11 22.36 0.23 -3.19 16 9 C 0.08 2.09 11.18 84.67 0.95 3.03 16 10 N -0.51 -14.57 7.49 -183.88 -1.38 -15.95 16 11 N -0.69 -24.36 6.05 -469.59 -2.84 -27.20 16 12 C 0.12 4.80 2.18 44.89 0.10 4.90 16 13 H 0.05 2.19 7.42 -2.39 -0.02 2.17 16 14 C -0.11 -4.53 5.18 30.66 0.16 -4.37 16 15 C -0.01 -0.71 5.59 30.11 0.17 -0.54 16 16 C -0.49 -27.62 5.51 -16.17 -0.09 -27.71 16 17 C 0.02 1.09 5.46 84.66 0.46 1.56 16 18 N -0.93 -56.94 12.73 21.45 0.27 -56.67 16 19 Si 0.94 45.05 27.27 68.60 1.87 46.92 16 20 H -0.27 -12.69 7.11 99.48 0.71 -11.99 16 21 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 22 H -0.26 -11.73 6.46 99.48 0.64 -11.09 16 23 C 0.01 0.39 5.97 30.11 0.18 0.57 16 24 C -0.08 -3.79 5.54 30.66 0.17 -3.62 16 25 H 0.06 1.46 8.14 -2.38 -0.02 1.45 16 26 H 0.08 1.40 8.14 -2.38 -0.02 1.38 16 27 H 0.04 1.05 7.73 -2.39 -0.02 1.03 16 28 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 29 H 0.11 1.65 7.86 -2.39 -0.02 1.63 16 30 H 0.16 1.85 7.94 -2.91 -0.02 1.83 16 31 H 0.16 1.52 8.06 -2.91 -0.02 1.50 16 32 H 0.16 2.11 8.06 -2.91 -0.02 2.08 16 33 H 0.15 3.68 8.06 -2.91 -0.02 3.66 16 34 H 0.36 12.96 5.11 -89.69 -0.46 12.50 16 35 H 0.03 1.31 7.42 -2.39 -0.02 1.29 16 36 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.03 1.23 4.78 -2.39 -0.01 1.22 16 38 H 0.01 0.67 8.14 -2.39 -0.02 0.65 16 39 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 40 H 0.02 1.45 7.07 -2.39 -0.02 1.43 16 41 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 42 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 43 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 Total: -1.00 -67.11 334.03 2.36 -64.76 By element: Atomic # 1 Polarization: 19.38 SS G_CDS: 0.46 Total: 19.84 kcal Atomic # 6 Polarization: -35.66 SS G_CDS: 3.97 Total: -31.69 kcal Atomic # 7 Polarization: -95.88 SS G_CDS: -3.94 Total: -99.82 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 1.87 Total: 46.92 kcal Total: -67.11 2.36 -64.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256398521.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.809 kcal (2) G-P(sol) polarization free energy of solvation -67.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds