Wall clock time and date at job start Mon Mar 30 2020 01:13:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.47706 * 2 1 4 4 C 1.53004 * 109.46897 * 119.99225 * 2 1 3 5 5 C 1.50704 * 109.47274 * 184.99703 * 4 2 1 6 6 C 1.38646 * 120.79124 * 269.72061 * 5 4 2 7 7 C 1.38203 * 119.15714 * 179.75303 * 6 5 4 8 8 N 1.31861 * 120.77031 * 0.53366 * 7 6 5 9 9 C 1.31874 * 121.72201 * 359.74576 * 8 7 6 10 10 C 1.38201 * 120.76808 * 359.96948 * 9 8 7 11 11 N 1.46896 * 109.47333 * 239.99188 * 2 1 3 12 12 C 1.46902 * 110.99745 * 85.00411 * 11 2 1 13 13 H 1.09000 * 109.41105 * 324.85898 * 12 11 2 14 14 C 1.52956 * 109.41474 * 84.64986 * 12 11 2 15 15 C 1.52796 * 109.48449 * 183.57319 * 14 12 11 16 16 C 1.51265 * 108.76112 * 305.60609 * 15 14 12 17 17 C 1.37885 * 120.84832 * 231.31003 * 16 15 14 18 18 N 1.31516 * 119.99913 * 179.71909 * 17 16 15 19 19 Si 1.86798 * 119.99766 * 359.71988 * 17 16 15 20 20 H 1.48506 * 109.46985 * 179.97438 * 19 17 16 21 21 H 1.48494 * 109.47276 * 299.99832 * 19 17 16 22 22 H 1.48498 * 109.47150 * 60.00043 * 19 17 16 23 23 C 1.51267 * 118.30210 * 51.04117 * 16 15 14 24 24 C 1.52961 * 109.40968 * 205.00251 * 12 11 2 25 25 H 1.08995 * 109.47525 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46965 * 300.01269 * 1 2 3 27 27 H 1.08999 * 109.46759 * 60.00532 * 1 2 3 28 28 H 1.08996 * 109.47501 * 305.00352 * 4 2 1 29 29 H 1.09004 * 109.47127 * 65.00150 * 4 2 1 30 30 H 1.08000 * 120.42020 * 0.02562 * 6 5 4 31 31 H 1.08003 * 119.61084 * 180.25364 * 7 6 5 32 32 H 1.08007 * 119.61854 * 180.02562 * 9 8 7 33 33 H 1.07995 * 120.42341 * 180.02562 * 10 9 8 34 34 H 1.00893 * 110.99902 * 321.05083 * 11 2 1 35 35 H 1.09005 * 109.48193 * 303.68053 * 14 12 11 36 36 H 1.08997 * 109.48452 * 63.70771 * 14 12 11 37 37 H 1.08998 * 109.56420 * 185.79334 * 15 14 12 38 38 H 1.09000 * 109.46388 * 65.35992 * 15 14 12 39 39 H 0.97001 * 119.99646 * 179.97438 * 18 17 16 40 40 H 1.08999 * 109.62830 * 68.61734 * 23 16 15 41 41 H 1.08999 * 109.62612 * 188.99853 * 23 16 15 42 42 H 1.08996 * 109.48677 * 56.31381 * 24 12 11 43 43 H 1.09006 * 109.49228 * 296.27537 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 1.2494 5 6 3.5419 -0.6149 1.3129 6 6 4.3471 -1.5782 0.7247 7 6 5.7206 -1.4446 0.7989 8 7 6.2659 -0.4223 1.4285 9 6 5.5313 0.5094 2.0041 10 6 4.1513 0.4456 1.9660 11 7 2.0197 -0.6926 -1.1993 12 6 2.0826 0.2224 -2.3468 13 1 1.2560 0.9307 -2.2911 14 6 3.4075 0.9860 -2.3162 15 6 3.4370 2.0015 -3.4575 16 6 3.1630 1.2795 -4.7582 17 6 4.0011 1.4331 -5.8423 18 7 3.7500 0.7931 -6.9635 19 14 5.4930 2.5503 -5.7185 20 1 6.2258 2.5426 -7.0101 21 1 5.0512 3.9335 -5.4077 22 1 6.3885 2.0624 -4.6390 23 6 1.9495 0.3798 -4.8373 24 6 1.9770 -0.5812 -3.6441 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5140 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.6053 -0.2616 2.1370 29 1 1.7516 -1.7714 1.2058 30 1 3.9065 -2.4200 0.2112 31 1 6.3547 -2.1885 0.3398 32 1 6.0138 1.3325 2.5105 33 1 3.5551 1.2119 2.4389 34 1 1.4496 -1.4980 -1.4098 35 1 3.5056 1.5057 -1.3630 36 1 4.2339 0.2852 -2.4349 37 1 4.4184 2.4737 -3.5007 38 1 2.6705 2.7582 -3.2903 39 1 4.3395 0.9015 -7.7262 40 1 1.0429 0.9838 -4.8001 41 1 1.9740 -0.1869 -5.7680 42 1 1.0614 -1.1723 -3.6322 43 1 2.8372 -1.2450 -3.7317 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001256721636.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:00 Heat of formation + Delta-G solvation = 7.777670 kcal Electronic energy + Delta-G solvation = -21715.540967 eV Core-core repulsion = 18759.123125 eV Total energy + Delta-G solvation = -2956.417841 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.01134 -38.09064 -35.75197 -33.21309 -31.88052 -30.99254 -29.97265 -29.32662 -27.04089 -26.20755 -23.25598 -22.51772 -21.70554 -21.40394 -20.16409 -19.12847 -16.60971 -16.22738 -16.05328 -15.44488 -15.17130 -14.48822 -14.43944 -14.03804 -13.52332 -13.47308 -13.33181 -13.00254 -12.71688 -12.45470 -12.24417 -12.13015 -11.85658 -11.63506 -11.38329 -11.11520 -10.99309 -10.73141 -10.70798 -10.37418 -10.09078 -9.97205 -9.59884 -9.29579 -9.27688 -8.93181 -8.88251 -8.61415 -8.43610 -7.91906 -6.07291 -3.97312 1.34837 1.49022 3.32256 3.38353 3.40777 4.00802 4.42112 4.44521 4.63591 4.72611 4.92546 5.08197 5.21091 5.23993 5.29714 5.38130 5.39885 5.53607 5.70100 5.75977 5.80535 5.86350 5.89754 5.99240 6.06294 6.14237 6.22591 6.31631 6.55224 6.58153 6.70537 6.82353 6.87781 6.92186 6.98799 7.08045 7.11361 7.47919 7.59394 7.69937 7.76771 7.84255 7.90475 8.16963 8.42142 8.99765 9.58169 11.02576 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.016742 B = 0.005935 C = 0.004863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1672.043097 B = 4716.907017 C = 5756.311368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.088 3.912 3 H 0.078 0.922 4 C -0.071 4.071 5 C -0.017 4.017 6 C -0.139 4.139 7 C 0.094 3.906 8 N -0.494 5.494 9 C 0.092 3.908 10 C -0.178 4.178 11 N -0.682 5.682 12 C 0.104 3.896 13 H 0.031 0.969 14 C -0.086 4.086 15 C -0.012 4.012 16 C -0.485 4.485 17 C 0.076 3.924 18 N -0.892 5.892 19 Si 0.889 3.111 20 H -0.292 1.292 21 H -0.276 1.276 22 H -0.274 1.274 23 C 0.012 3.988 24 C -0.107 4.107 25 H 0.055 0.945 26 H 0.056 0.944 27 H 0.058 0.942 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.134 0.866 31 H 0.150 0.850 32 H 0.148 0.852 33 H 0.126 0.874 34 H 0.333 0.667 35 H 0.025 0.975 36 H 0.053 0.947 37 H 0.023 0.977 38 H 0.013 0.987 39 H 0.264 0.736 40 H 0.000 1.000 41 H 0.057 0.943 42 H 0.025 0.975 43 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.656 -3.603 16.786 17.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.023 4.023 3 H 0.096 0.904 4 C -0.109 4.109 5 C -0.025 4.025 6 C -0.159 4.159 7 C -0.063 4.063 8 N -0.204 5.204 9 C -0.065 4.065 10 C -0.198 4.198 11 N -0.312 5.312 12 C -0.004 4.004 13 H 0.049 0.951 14 C -0.125 4.125 15 C -0.050 4.050 16 C -0.504 4.504 17 C -0.126 4.126 18 N -0.529 5.529 19 Si 0.718 3.282 20 H -0.219 1.219 21 H -0.201 1.201 22 H -0.199 1.199 23 C -0.026 4.026 24 C -0.145 4.145 25 H 0.074 0.926 26 H 0.075 0.925 27 H 0.077 0.923 28 H 0.090 0.910 29 H 0.093 0.907 30 H 0.151 0.849 31 H 0.167 0.833 32 H 0.165 0.835 33 H 0.144 0.856 34 H 0.151 0.849 35 H 0.043 0.957 36 H 0.072 0.928 37 H 0.041 0.959 38 H 0.031 0.969 39 H 0.074 0.926 40 H 0.018 0.982 41 H 0.076 0.924 42 H 0.044 0.956 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.010 -3.498 16.788 17.266 hybrid contribution -1.026 0.702 -0.341 1.289 sum -3.036 -2.796 16.447 16.957 Atomic orbital electron populations 1.22498 0.97326 1.01911 1.02181 1.21510 0.91970 0.98309 0.90528 0.90373 1.20691 0.90591 1.01792 0.97814 1.20085 0.96052 0.93152 0.93244 1.21948 0.94384 1.00401 0.99138 1.22703 0.93115 0.95207 0.95242 1.67612 1.41218 1.02658 1.08876 1.22596 0.90841 0.96695 0.96394 1.21966 0.96246 0.99324 1.02278 1.60715 1.56346 1.09958 1.04198 1.21396 0.97225 0.93060 0.88749 0.95109 1.21406 0.96354 0.97993 0.96719 1.19567 0.96099 0.94639 0.94698 1.20005 1.09464 1.25973 0.94997 1.24827 0.97398 0.95419 0.95004 1.69823 1.38396 1.41976 1.02748 0.86678 0.83197 0.81485 0.76858 1.21856 1.20137 1.19931 1.19342 0.94792 0.94065 0.94378 1.21789 0.98617 0.98369 0.95757 0.92566 0.92500 0.92259 0.90951 0.90719 0.84857 0.83283 0.83487 0.85569 0.84918 0.95650 0.92785 0.95891 0.96899 0.92595 0.98170 0.92439 0.95596 0.92483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.93 9.15 37.16 0.34 -1.59 16 2 C 0.09 1.08 2.37 -67.71 -0.16 0.92 16 3 H 0.08 1.11 7.07 -51.93 -0.37 0.74 16 4 C -0.07 -0.74 5.08 -27.88 -0.14 -0.89 16 5 C -0.02 -0.21 4.97 -104.31 -0.52 -0.73 16 6 C -0.14 -1.81 9.49 -39.44 -0.37 -2.19 16 7 C 0.09 1.30 11.18 -17.55 -0.20 1.11 16 8 N -0.49 -7.46 10.36 -13.25 -0.14 -7.59 16 9 C 0.09 1.20 11.18 -17.55 -0.20 1.01 16 10 C -0.18 -2.16 9.82 -39.44 -0.39 -2.55 16 11 N -0.68 -10.00 5.49 -99.78 -0.55 -10.55 16 12 C 0.10 1.93 2.21 -67.75 -0.15 1.78 16 13 H 0.03 0.59 7.11 -51.93 -0.37 0.23 16 14 C -0.09 -1.81 5.42 -26.86 -0.15 -1.96 16 15 C -0.01 -0.29 5.56 -27.71 -0.15 -0.44 16 16 C -0.49 -12.97 5.52 -98.92 -0.55 -13.51 16 17 C 0.08 2.12 5.46 -17.82 -0.10 2.02 16 18 N -0.89 -25.99 12.73 55.43 0.71 -25.29 16 19 Si 0.89 21.95 26.80 -169.99 -4.56 17.39 16 20 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 23 C 0.01 0.30 5.97 -27.48 -0.16 0.14 16 24 C -0.11 -2.22 5.24 -26.63 -0.14 -2.36 16 25 H 0.06 0.55 8.13 -51.93 -0.42 0.12 16 26 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.06 0.72 7.42 -51.93 -0.39 0.34 16 28 H 0.07 0.64 8.10 -51.93 -0.42 0.22 16 29 H 0.07 0.72 8.10 -51.93 -0.42 0.30 16 30 H 0.13 1.60 8.06 -52.49 -0.42 1.17 16 31 H 0.15 1.76 8.06 -52.48 -0.42 1.34 16 32 H 0.15 1.55 8.06 -52.48 -0.42 1.12 16 33 H 0.13 1.24 8.06 -52.49 -0.42 0.81 16 34 H 0.33 4.52 8.04 -39.30 -0.32 4.20 16 35 H 0.02 0.50 7.36 -51.93 -0.38 0.12 16 36 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 37 H 0.02 0.55 5.17 -51.93 -0.27 0.28 16 38 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 39 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 40 H 0.00 0.00 8.14 -51.93 -0.42 -0.42 16 41 H 0.06 1.57 7.07 -51.93 -0.37 1.20 16 42 H 0.03 0.47 8.05 -51.93 -0.42 0.06 16 43 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 LS Contribution 338.19 15.07 5.10 5.10 Total: -1.00 -29.53 338.19 -9.55 -39.08 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -7.08 Total: 1.11 kcal Atomic # 6 Polarization: -16.21 SS G_CDS: -3.03 Total: -19.24 kcal Atomic # 7 Polarization: -43.45 SS G_CDS: 0.02 Total: -43.43 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.56 Total: 17.39 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -29.53 -9.55 -39.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256721636.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.859 kcal (2) G-P(sol) polarization free energy of solvation -29.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.081 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds