Wall clock time and date at job start Mon Mar 30 2020 01:12:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.47706 * 2 1 4 4 C 1.53004 * 109.46897 * 119.99225 * 2 1 3 5 5 C 1.50704 * 109.47274 * 184.99703 * 4 2 1 6 6 C 1.38646 * 120.79124 * 269.72061 * 5 4 2 7 7 C 1.38203 * 119.15714 * 179.75303 * 6 5 4 8 8 N 1.31861 * 120.77031 * 0.53366 * 7 6 5 9 9 C 1.31874 * 121.72201 * 359.74576 * 8 7 6 10 10 C 1.38201 * 120.76808 * 359.96948 * 9 8 7 11 11 N 1.46896 * 109.47333 * 239.99188 * 2 1 3 12 12 C 1.46902 * 110.99745 * 85.00411 * 11 2 1 13 13 H 1.09000 * 109.41105 * 324.85898 * 12 11 2 14 14 C 1.52956 * 109.41474 * 84.64986 * 12 11 2 15 15 C 1.52796 * 109.48449 * 183.57319 * 14 12 11 16 16 C 1.51265 * 108.76112 * 305.60609 * 15 14 12 17 17 C 1.37885 * 120.84832 * 231.31003 * 16 15 14 18 18 N 1.31516 * 119.99913 * 179.71909 * 17 16 15 19 19 Si 1.86798 * 119.99766 * 359.71988 * 17 16 15 20 20 H 1.48506 * 109.46985 * 179.97438 * 19 17 16 21 21 H 1.48494 * 109.47276 * 299.99832 * 19 17 16 22 22 H 1.48498 * 109.47150 * 60.00043 * 19 17 16 23 23 C 1.51267 * 118.30210 * 51.04117 * 16 15 14 24 24 C 1.52961 * 109.40968 * 205.00251 * 12 11 2 25 25 H 1.08995 * 109.47525 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46965 * 300.01269 * 1 2 3 27 27 H 1.08999 * 109.46759 * 60.00532 * 1 2 3 28 28 H 1.08996 * 109.47501 * 305.00352 * 4 2 1 29 29 H 1.09004 * 109.47127 * 65.00150 * 4 2 1 30 30 H 1.08000 * 120.42020 * 0.02562 * 6 5 4 31 31 H 1.08003 * 119.61084 * 180.25364 * 7 6 5 32 32 H 1.08007 * 119.61854 * 180.02562 * 9 8 7 33 33 H 1.07995 * 120.42341 * 180.02562 * 10 9 8 34 34 H 1.00893 * 110.99902 * 321.05083 * 11 2 1 35 35 H 1.09005 * 109.48193 * 303.68053 * 14 12 11 36 36 H 1.08997 * 109.48452 * 63.70771 * 14 12 11 37 37 H 1.08998 * 109.56420 * 185.79334 * 15 14 12 38 38 H 1.09000 * 109.46388 * 65.35992 * 15 14 12 39 39 H 0.97001 * 119.99646 * 179.97438 * 18 17 16 40 40 H 1.08999 * 109.62830 * 68.61734 * 23 16 15 41 41 H 1.08999 * 109.62612 * 188.99853 * 23 16 15 42 42 H 1.08996 * 109.48677 * 56.31381 * 24 12 11 43 43 H 1.09006 * 109.49228 * 296.27537 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 1.2494 5 6 3.5419 -0.6149 1.3129 6 6 4.3471 -1.5782 0.7247 7 6 5.7206 -1.4446 0.7989 8 7 6.2659 -0.4223 1.4285 9 6 5.5313 0.5094 2.0041 10 6 4.1513 0.4456 1.9660 11 7 2.0197 -0.6926 -1.1993 12 6 2.0826 0.2224 -2.3468 13 1 1.2560 0.9307 -2.2911 14 6 3.4075 0.9860 -2.3162 15 6 3.4370 2.0015 -3.4575 16 6 3.1630 1.2795 -4.7582 17 6 4.0011 1.4331 -5.8423 18 7 3.7500 0.7931 -6.9635 19 14 5.4930 2.5503 -5.7185 20 1 6.2258 2.5426 -7.0101 21 1 5.0512 3.9335 -5.4077 22 1 6.3885 2.0624 -4.6390 23 6 1.9495 0.3798 -4.8373 24 6 1.9770 -0.5812 -3.6441 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5140 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.6053 -0.2616 2.1370 29 1 1.7516 -1.7714 1.2058 30 1 3.9065 -2.4200 0.2112 31 1 6.3547 -2.1885 0.3398 32 1 6.0138 1.3325 2.5105 33 1 3.5551 1.2119 2.4389 34 1 1.4496 -1.4980 -1.4098 35 1 3.5056 1.5057 -1.3630 36 1 4.2339 0.2852 -2.4349 37 1 4.4184 2.4737 -3.5007 38 1 2.6705 2.7582 -3.2903 39 1 4.3395 0.9015 -7.7262 40 1 1.0429 0.9838 -4.8001 41 1 1.9740 -0.1869 -5.7680 42 1 1.0614 -1.1723 -3.6322 43 1 2.8372 -1.2450 -3.7317 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001256721636.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:59 Heat of formation + Delta-G solvation = -9.442801 kcal Electronic energy + Delta-G solvation = -21716.287702 eV Core-core repulsion = 18759.123125 eV Total energy + Delta-G solvation = -2957.164577 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.97950 -39.49850 -37.16950 -34.67483 -33.41036 -31.94402 -31.64463 -30.91583 -27.91394 -27.85916 -24.22202 -23.92356 -23.29334 -22.96098 -21.25767 -20.85423 -18.07256 -17.50650 -17.21844 -16.50855 -16.44114 -16.31187 -15.61999 -15.27209 -14.90890 -14.58574 -14.46909 -14.42012 -14.36985 -13.94769 -13.79963 -13.38796 -13.07646 -12.91236 -12.73547 -12.63099 -12.45340 -12.27171 -12.03162 -11.92103 -11.81304 -11.66449 -11.48937 -10.80916 -10.56896 -10.48956 -10.28733 -10.23651 -9.90146 -9.14153 -8.19555 -6.11813 0.38699 0.52450 1.34251 1.36421 1.43463 2.37398 3.02312 3.05483 3.34963 3.71840 3.82895 4.02545 4.13403 4.14855 4.29363 4.37121 4.43731 4.45206 4.48795 4.60516 4.74386 4.75612 4.84005 4.91827 4.94954 4.98883 5.04972 5.07156 5.12235 5.17329 5.22612 5.25139 5.30265 5.33882 5.38081 5.61447 5.62266 5.65287 5.76309 5.89992 5.98530 6.32235 6.35428 6.70632 6.94410 7.18848 7.45509 8.91565 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.016742 B = 0.005935 C = 0.004863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1672.043097 B = 4716.907017 C = 5756.311368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.089 3.911 3 H 0.062 0.938 4 C -0.063 4.063 5 C -0.025 4.025 6 C -0.147 4.147 7 C 0.073 3.927 8 N -0.525 5.525 9 C 0.076 3.924 10 C -0.179 4.179 11 N -0.680 5.680 12 C 0.120 3.880 13 H 0.030 0.970 14 C -0.075 4.075 15 C -0.015 4.015 16 C -0.495 4.495 17 C 0.023 3.977 18 N -0.930 5.930 19 Si 0.938 3.062 20 H -0.291 1.291 21 H -0.267 1.267 22 H -0.273 1.273 23 C 0.008 3.992 24 C -0.096 4.096 25 H 0.069 0.931 26 H 0.076 0.924 27 H 0.041 0.959 28 H 0.097 0.903 29 H 0.087 0.913 30 H 0.141 0.859 31 H 0.158 0.842 32 H 0.167 0.833 33 H 0.152 0.848 34 H 0.344 0.656 35 H 0.040 0.960 36 H 0.032 0.968 37 H 0.018 0.982 38 H 0.019 0.981 39 H 0.262 0.738 40 H -0.002 1.002 41 H 0.024 0.976 42 H 0.052 0.948 43 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.812 -3.376 19.316 20.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.021 4.021 3 H 0.080 0.920 4 C -0.100 4.100 5 C -0.033 4.033 6 C -0.166 4.166 7 C -0.083 4.083 8 N -0.235 5.235 9 C -0.081 4.081 10 C -0.198 4.198 11 N -0.311 5.311 12 C 0.010 3.990 13 H 0.048 0.952 14 C -0.114 4.114 15 C -0.053 4.053 16 C -0.515 4.515 17 C -0.175 4.175 18 N -0.570 5.570 19 Si 0.765 3.235 20 H -0.217 1.217 21 H -0.192 1.192 22 H -0.199 1.199 23 C -0.030 4.030 24 C -0.134 4.134 25 H 0.088 0.912 26 H 0.095 0.905 27 H 0.060 0.940 28 H 0.116 0.884 29 H 0.105 0.895 30 H 0.159 0.841 31 H 0.175 0.825 32 H 0.184 0.816 33 H 0.170 0.830 34 H 0.163 0.837 35 H 0.059 0.941 36 H 0.051 0.949 37 H 0.036 0.964 38 H 0.037 0.963 39 H 0.072 0.928 40 H 0.017 0.983 41 H 0.043 0.957 42 H 0.071 0.929 43 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -3.176 -3.272 19.343 19.873 hybrid contribution -0.723 0.631 -1.088 1.451 sum -3.899 -2.641 18.255 18.853 Atomic orbital electron populations 1.22420 0.95668 1.02873 1.02326 1.21548 0.93234 0.97387 0.89966 0.91981 1.20684 0.89074 1.02628 0.97627 1.20400 0.97213 0.92899 0.92804 1.22105 0.94181 1.01017 0.99332 1.22963 0.94011 0.95542 0.95772 1.67600 1.42383 1.03594 1.09968 1.23037 0.91718 0.96899 0.96396 1.22277 0.96069 0.99710 1.01774 1.60575 1.57435 1.09619 1.03463 1.21027 0.95661 0.93080 0.89191 0.95231 1.21231 0.97029 0.97066 0.96077 1.19604 0.95932 0.95288 0.94493 1.20635 1.09429 1.25546 0.95861 1.25539 1.00046 0.96952 0.95009 1.69948 1.39613 1.43986 1.03472 0.85888 0.80572 0.80362 0.76712 1.21741 1.19210 1.19852 1.19316 0.94238 0.94480 0.94949 1.21579 0.99193 0.97496 0.95146 0.91208 0.90546 0.93954 0.88414 0.89459 0.84096 0.82502 0.81576 0.82996 0.83726 0.94140 0.94908 0.96385 0.96273 0.92837 0.98322 0.95688 0.92924 0.94198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.03 9.15 71.98 0.66 -2.38 16 2 C 0.09 1.88 2.37 44.92 0.11 1.98 16 3 H 0.06 1.55 7.07 -2.39 -0.02 1.53 16 4 C -0.06 -1.05 5.08 29.85 0.15 -0.90 16 5 C -0.02 -0.55 4.97 -19.67 -0.10 -0.65 16 6 C -0.15 -3.59 9.49 22.36 0.21 -3.38 16 7 C 0.07 1.99 11.18 84.68 0.95 2.93 16 8 N -0.53 -15.52 10.36 -195.84 -2.03 -17.55 16 9 C 0.08 1.87 11.18 84.68 0.95 2.82 16 10 C -0.18 -3.84 9.82 22.36 0.22 -3.62 16 11 N -0.68 -18.05 5.49 -469.60 -2.58 -20.62 16 12 C 0.12 4.23 2.21 44.89 0.10 4.33 16 13 H 0.03 1.07 7.11 -2.39 -0.02 1.06 16 14 C -0.08 -3.07 5.42 30.51 0.17 -2.91 16 15 C -0.02 -0.71 5.56 29.96 0.17 -0.54 16 16 C -0.50 -26.65 5.52 -16.17 -0.09 -26.74 16 17 C 0.02 1.28 5.46 84.66 0.46 1.74 16 18 N -0.93 -55.74 12.73 21.45 0.27 -55.47 16 19 Si 0.94 45.44 26.80 68.60 1.84 47.28 16 20 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 21 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 22 H -0.27 -13.07 7.11 99.48 0.71 -12.36 16 23 C 0.01 0.41 5.97 30.11 0.18 0.59 16 24 C -0.10 -3.89 5.24 30.66 0.16 -3.73 16 25 H 0.07 1.05 8.13 -2.39 -0.02 1.03 16 26 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.04 0.89 7.42 -2.39 -0.02 0.88 16 28 H 0.10 1.22 8.10 -2.39 -0.02 1.20 16 29 H 0.09 1.30 8.10 -2.38 -0.02 1.28 16 30 H 0.14 3.12 8.06 -2.91 -0.02 3.10 16 31 H 0.16 3.73 8.06 -2.91 -0.02 3.71 16 32 H 0.17 3.21 8.06 -2.91 -0.02 3.18 16 33 H 0.15 2.39 8.06 -2.91 -0.02 2.37 16 34 H 0.34 8.17 8.04 -89.70 -0.72 7.45 16 35 H 0.04 1.52 7.36 -2.38 -0.02 1.50 16 36 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.02 0.84 5.17 -2.39 -0.01 0.83 16 38 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.26 15.04 8.31 -92.71 -0.77 14.26 16 40 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 41 H 0.02 1.39 7.07 -2.39 -0.02 1.37 16 42 H 0.05 1.84 8.05 -2.39 -0.02 1.82 16 43 H 0.04 1.74 8.14 -2.38 -0.02 1.72 16 Total: -1.00 -64.66 338.19 2.06 -62.61 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: 0.26 Total: 14.21 kcal Atomic # 6 Polarization: -34.74 SS G_CDS: 4.29 Total: -30.45 kcal Atomic # 7 Polarization: -89.31 SS G_CDS: -4.33 Total: -93.65 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 1.84 Total: 47.28 kcal Total: -64.66 2.06 -62.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256721636.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.165 kcal (2) G-P(sol) polarization free energy of solvation -64.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds