Wall clock time and date at job start Mon Mar 30 2020 01:13:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47005 * 2 1 4 4 C 1.52992 * 109.47333 * 239.99532 * 2 1 3 5 5 C 1.50704 * 109.47211 * 175.00470 * 4 2 1 6 6 C 1.38649 * 120.78754 * 269.71738 * 5 4 2 7 7 C 1.38205 * 119.16119 * 179.75597 * 6 5 4 8 8 N 1.31870 * 120.76505 * 0.53327 * 7 6 5 9 9 C 1.31873 * 121.72011 * 359.73913 * 8 7 6 10 10 C 1.38203 * 120.76990 * 359.97438 * 9 8 7 11 11 N 1.46900 * 109.46876 * 119.99488 * 2 1 3 12 12 C 1.46902 * 111.00259 * 237.92117 * 11 2 1 13 13 H 1.09000 * 109.41222 * 322.00105 * 12 11 2 14 14 C 1.52963 * 109.41026 * 81.78051 * 12 11 2 15 15 C 1.53671 * 109.32269 * 183.83478 * 14 12 11 16 16 C 1.51270 * 108.30857 * 305.14256 * 15 14 12 17 17 C 1.37876 * 120.84674 * 231.37898 * 16 15 14 18 18 N 1.31513 * 120.00086 * 186.63145 * 17 16 15 19 19 Si 1.86803 * 119.99893 * 6.90971 * 17 16 15 20 20 H 1.48511 * 109.46883 * 179.72697 * 19 17 16 21 21 H 1.48505 * 109.47125 * 299.72011 * 19 17 16 22 22 H 1.48491 * 109.47381 * 59.72574 * 19 17 16 23 23 C 1.51261 * 118.30077 * 51.65760 * 16 15 14 24 24 C 1.52956 * 109.41827 * 202.13430 * 12 11 2 25 25 H 1.09001 * 109.47347 * 183.77574 * 1 2 3 26 26 H 1.08997 * 109.47500 * 303.78064 * 1 2 3 27 27 H 1.09004 * 109.46539 * 63.77481 * 1 2 3 28 28 H 1.09004 * 109.47142 * 295.00320 * 4 2 1 29 29 H 1.08999 * 109.47427 * 55.00129 * 4 2 1 30 30 H 1.08006 * 120.41683 * 359.97438 * 6 5 4 31 31 H 1.07994 * 119.61757 * 180.29387 * 7 6 5 32 32 H 1.08004 * 119.61087 * 180.02562 * 9 8 7 33 33 H 1.08000 * 120.41902 * 180.02562 * 10 9 8 34 34 H 1.00900 * 111.00309 * 113.96868 * 11 2 1 35 35 H 1.08992 * 109.48716 * 303.68448 * 14 12 11 36 36 H 1.09004 * 109.48305 * 63.71617 * 14 12 11 37 37 H 1.08996 * 109.68848 * 185.52480 * 15 14 12 38 38 H 1.09000 * 109.77959 * 64.81238 * 15 14 12 39 39 H 0.97003 * 119.99628 * 5.89750 * 18 17 16 40 40 H 1.08999 * 109.63207 * 68.11018 * 23 16 15 41 41 H 1.09000 * 109.62629 * 188.69054 * 23 16 15 42 42 H 1.09003 * 109.47674 * 56.31554 * 24 12 11 43 43 H 1.09005 * 109.47972 * 296.27854 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 3.5420 -0.6150 -1.3125 6 6 4.1515 0.4422 -1.9707 7 6 5.5315 0.5091 -2.0037 8 7 6.2661 -0.4225 -1.4280 9 6 5.7206 -1.4447 -0.7982 10 6 4.3471 -1.5752 -0.7190 11 7 2.0196 -0.6924 1.1995 12 6 2.8818 0.1872 2.0001 13 1 3.4934 0.7976 1.3357 14 6 2.0123 1.0983 2.8683 15 6 2.9119 2.0822 3.6326 16 6 3.9412 1.2849 4.4028 17 6 4.1385 1.5000 5.7503 18 7 5.1236 0.8934 6.3757 19 14 3.0018 2.6471 6.6893 20 1 3.4199 2.7019 8.1133 21 1 3.0746 4.0081 6.0995 22 1 1.6077 2.1435 6.6017 23 6 4.7528 0.2501 3.6555 24 6 3.7904 -0.6634 2.8892 25 1 -0.3634 -1.0254 0.0677 26 1 -0.3634 0.5714 0.8541 27 1 -0.3632 0.4542 -0.9219 28 1 1.7516 -1.7716 -1.2054 29 1 1.6055 -0.2619 -2.1369 30 1 3.5553 1.2056 -2.4484 31 1 6.0140 1.3319 -2.5102 32 1 6.3548 -2.1882 -0.3382 33 1 3.9064 -2.4144 -0.2014 34 1 2.5009 -1.5446 0.9541 35 1 1.3231 1.6555 2.2339 36 1 1.4462 0.4934 3.5767 37 1 2.3089 2.6683 4.3261 38 1 3.4144 2.7457 2.9288 39 1 5.7625 0.3628 5.8745 40 1 5.4227 0.7470 2.9537 41 1 5.3331 -0.3414 4.3636 42 1 4.3614 -1.3549 2.2694 43 1 3.1824 -1.2266 3.5972 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001256721637.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:03 Heat of formation + Delta-G solvation = 7.585869 kcal Electronic energy + Delta-G solvation = -21940.191187 eV Core-core repulsion = 18983.765028 eV Total energy + Delta-G solvation = -2956.426159 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.33067 -38.10236 -35.89733 -33.21018 -31.96503 -31.25431 -30.12583 -29.26289 -27.14070 -25.94564 -23.51877 -22.46847 -22.01351 -21.13107 -20.28755 -19.18669 -16.78174 -16.46651 -16.37146 -15.77218 -15.29239 -15.01207 -14.21086 -13.85343 -13.79394 -13.63539 -13.48119 -12.99217 -12.78358 -12.39835 -12.30772 -12.18308 -11.81055 -11.52628 -11.43569 -11.09667 -10.92394 -10.81943 -10.60058 -10.20774 -10.13455 -9.97898 -9.57071 -9.52771 -9.47785 -9.17987 -9.10369 -8.41019 -8.29882 -7.97764 -6.39098 -3.97408 1.11447 1.21516 3.43295 3.44881 3.64667 3.78813 4.40288 4.44391 4.51247 4.51679 4.69988 4.93930 5.02449 5.10920 5.26243 5.31270 5.33696 5.58116 5.61299 5.72530 5.74410 5.78038 5.81776 5.91284 5.97661 6.08397 6.20237 6.27184 6.36420 6.52295 6.66224 6.67762 6.76273 6.84236 6.94942 6.95625 7.08111 7.28499 7.42992 7.60106 7.67524 7.81905 7.96771 8.11850 8.36839 8.90655 9.64405 10.98023 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.019426 B = 0.005741 C = 0.004903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.037596 B = 4876.283716 C = 5709.350041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.088 3.912 3 H 0.064 0.936 4 C -0.102 4.102 5 C -0.037 4.037 6 C -0.173 4.173 7 C 0.100 3.900 8 N -0.489 5.489 9 C 0.106 3.894 10 C -0.170 4.170 11 N -0.684 5.684 12 C 0.108 3.892 13 H 0.027 0.973 14 C -0.093 4.093 15 C -0.006 4.006 16 C -0.564 4.564 17 C 0.034 3.966 18 N -0.908 5.908 19 Si 1.060 2.940 20 H -0.288 1.288 21 H -0.287 1.287 22 H -0.284 1.284 23 C 0.006 3.994 24 C -0.103 4.103 25 H 0.056 0.944 26 H 0.061 0.939 27 H 0.048 0.952 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.131 0.869 31 H 0.153 0.847 32 H 0.154 0.846 33 H 0.132 0.868 34 H 0.331 0.669 35 H 0.027 0.973 36 H 0.056 0.944 37 H 0.024 0.976 38 H 0.008 0.992 39 H 0.271 0.729 40 H 0.000 1.000 41 H 0.035 0.965 42 H 0.024 0.976 43 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.798 -3.444 -16.556 17.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.022 4.022 3 H 0.082 0.918 4 C -0.140 4.140 5 C -0.045 4.045 6 C -0.193 4.193 7 C -0.057 4.057 8 N -0.198 5.198 9 C -0.051 4.051 10 C -0.189 4.189 11 N -0.315 5.315 12 C 0.000 4.000 13 H 0.045 0.955 14 C -0.131 4.131 15 C -0.044 4.044 16 C -0.583 4.583 17 C -0.170 4.170 18 N -0.544 5.544 19 Si 0.889 3.111 20 H -0.214 1.214 21 H -0.214 1.214 22 H -0.211 1.211 23 C -0.032 4.032 24 C -0.141 4.141 25 H 0.075 0.925 26 H 0.080 0.920 27 H 0.067 0.933 28 H 0.099 0.901 29 H 0.098 0.902 30 H 0.149 0.851 31 H 0.170 0.830 32 H 0.171 0.829 33 H 0.150 0.850 34 H 0.151 0.849 35 H 0.045 0.955 36 H 0.075 0.925 37 H 0.043 0.957 38 H 0.027 0.973 39 H 0.083 0.917 40 H 0.019 0.981 41 H 0.054 0.946 42 H 0.043 0.957 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.777 -2.682 -14.703 16.023 hybrid contribution 0.241 -0.625 -2.063 2.169 sum -5.535 -3.307 -16.765 17.963 Atomic orbital electron populations 1.21793 0.94494 1.02036 1.00959 1.21596 0.95750 0.97307 0.87559 0.91766 1.21257 0.90106 1.02540 1.00136 1.20316 0.96378 0.93639 0.94180 1.22007 0.96347 0.99141 1.01763 1.22724 0.90796 0.96543 0.95602 1.67671 1.41084 1.02455 1.08563 1.22742 0.92806 0.95073 0.94466 1.22054 0.95167 1.00498 1.01226 1.60787 1.43690 1.07778 1.19287 1.21414 0.92018 0.93188 0.93411 0.95544 1.21660 0.96983 0.97267 0.97220 1.19649 0.94762 0.94478 0.95548 1.21012 1.20629 1.21000 0.95697 1.25735 0.98594 0.98174 0.94532 1.70805 1.13842 1.30398 1.39341 0.83652 0.75635 0.75847 0.75979 1.21374 1.21404 1.21097 1.19366 0.94162 0.94639 0.95000 1.21703 0.97598 0.97353 0.97454 0.92501 0.92032 0.93312 0.90117 0.90150 0.85086 0.82984 0.82854 0.84969 0.84938 0.95454 0.92531 0.95736 0.97346 0.91713 0.98138 0.94635 0.95726 0.92531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.56 9.52 37.16 0.35 -1.20 16 2 C 0.09 1.15 2.37 -67.72 -0.16 0.98 16 3 H 0.06 0.95 7.26 -51.93 -0.38 0.57 16 4 C -0.10 -1.07 4.75 -27.89 -0.13 -1.20 16 5 C -0.04 -0.45 4.98 -104.32 -0.52 -0.96 16 6 C -0.17 -2.04 9.82 -39.44 -0.39 -2.43 16 7 C 0.10 1.27 11.18 -17.55 -0.20 1.08 16 8 N -0.49 -7.17 10.36 -13.25 -0.14 -7.30 16 9 C 0.11 1.42 11.18 -17.55 -0.20 1.22 16 10 C -0.17 -2.10 8.84 -39.44 -0.35 -2.45 16 11 N -0.68 -10.63 6.03 -99.79 -0.60 -11.23 16 12 C 0.11 2.09 2.19 -67.75 -0.15 1.94 16 13 H 0.03 0.56 7.62 -51.93 -0.40 0.16 16 14 C -0.09 -1.96 5.45 -26.40 -0.14 -2.10 16 15 C -0.01 -0.15 5.66 -27.25 -0.15 -0.30 16 16 C -0.56 -15.24 5.49 -98.93 -0.54 -15.78 16 17 C 0.03 0.97 5.46 -17.82 -0.10 0.88 16 18 N -0.91 -27.29 13.60 55.43 0.75 -26.54 16 19 Si 1.06 25.49 27.18 -169.99 -4.62 20.87 16 20 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 21 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 22 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 23 C 0.01 0.16 5.83 -27.49 -0.16 0.00 16 24 C -0.10 -2.19 5.27 -26.64 -0.14 -2.33 16 25 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.08 0.78 8.09 -51.93 -0.42 0.36 16 29 H 0.08 0.71 8.10 -51.93 -0.42 0.29 16 30 H 0.13 1.24 8.06 -52.48 -0.42 0.82 16 31 H 0.15 1.53 8.06 -52.49 -0.42 1.11 16 32 H 0.15 1.74 8.06 -52.48 -0.42 1.32 16 33 H 0.13 1.42 7.16 -52.49 -0.38 1.05 16 34 H 0.33 4.78 5.63 -39.29 -0.22 4.56 16 35 H 0.03 0.52 7.84 -51.93 -0.41 0.11 16 36 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 37 H 0.02 0.57 5.14 -51.93 -0.27 0.31 16 38 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 39 H 0.27 8.09 6.54 -40.82 -0.27 7.82 16 40 H 0.00 0.01 8.14 -51.93 -0.42 -0.42 16 41 H 0.04 0.94 6.06 -51.93 -0.31 0.63 16 42 H 0.02 0.47 8.05 -51.93 -0.42 0.05 16 43 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 LS Contribution 335.13 15.07 5.05 5.05 Total: -1.00 -30.45 335.13 -9.44 -39.88 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: -6.91 Total: 1.92 kcal Atomic # 6 Polarization: -19.68 SS G_CDS: -2.97 Total: -22.66 kcal Atomic # 7 Polarization: -45.08 SS G_CDS: 0.01 Total: -45.07 kcal Atomic # 14 Polarization: 25.49 SS G_CDS: -4.62 Total: 20.87 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -30.45 -9.44 -39.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256721637.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.471 kcal (2) G-P(sol) polarization free energy of solvation -30.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.885 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds