Wall clock time and date at job start Mon Mar 30 2020 01:13:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47005 * 2 1 4 4 C 1.52992 * 109.47333 * 239.99532 * 2 1 3 5 5 C 1.50704 * 109.47211 * 175.00470 * 4 2 1 6 6 C 1.38649 * 120.78754 * 269.71738 * 5 4 2 7 7 C 1.38205 * 119.16119 * 179.75597 * 6 5 4 8 8 N 1.31870 * 120.76505 * 0.53327 * 7 6 5 9 9 C 1.31873 * 121.72011 * 359.73913 * 8 7 6 10 10 C 1.38203 * 120.76990 * 359.97438 * 9 8 7 11 11 N 1.46900 * 109.46876 * 119.99488 * 2 1 3 12 12 C 1.46902 * 111.00259 * 237.92117 * 11 2 1 13 13 H 1.09000 * 109.41222 * 322.00105 * 12 11 2 14 14 C 1.52963 * 109.41026 * 81.78051 * 12 11 2 15 15 C 1.53671 * 109.32269 * 183.83478 * 14 12 11 16 16 C 1.51270 * 108.30857 * 305.14256 * 15 14 12 17 17 C 1.37876 * 120.84674 * 231.37898 * 16 15 14 18 18 N 1.31513 * 120.00086 * 186.63145 * 17 16 15 19 19 Si 1.86803 * 119.99893 * 6.90971 * 17 16 15 20 20 H 1.48511 * 109.46883 * 179.72697 * 19 17 16 21 21 H 1.48505 * 109.47125 * 299.72011 * 19 17 16 22 22 H 1.48491 * 109.47381 * 59.72574 * 19 17 16 23 23 C 1.51261 * 118.30077 * 51.65760 * 16 15 14 24 24 C 1.52956 * 109.41827 * 202.13430 * 12 11 2 25 25 H 1.09001 * 109.47347 * 183.77574 * 1 2 3 26 26 H 1.08997 * 109.47500 * 303.78064 * 1 2 3 27 27 H 1.09004 * 109.46539 * 63.77481 * 1 2 3 28 28 H 1.09004 * 109.47142 * 295.00320 * 4 2 1 29 29 H 1.08999 * 109.47427 * 55.00129 * 4 2 1 30 30 H 1.08006 * 120.41683 * 359.97438 * 6 5 4 31 31 H 1.07994 * 119.61757 * 180.29387 * 7 6 5 32 32 H 1.08004 * 119.61087 * 180.02562 * 9 8 7 33 33 H 1.08000 * 120.41902 * 180.02562 * 10 9 8 34 34 H 1.00900 * 111.00309 * 113.96868 * 11 2 1 35 35 H 1.08992 * 109.48716 * 303.68448 * 14 12 11 36 36 H 1.09004 * 109.48305 * 63.71617 * 14 12 11 37 37 H 1.08996 * 109.68848 * 185.52480 * 15 14 12 38 38 H 1.09000 * 109.77959 * 64.81238 * 15 14 12 39 39 H 0.97003 * 119.99628 * 5.89750 * 18 17 16 40 40 H 1.08999 * 109.63207 * 68.11018 * 23 16 15 41 41 H 1.09000 * 109.62629 * 188.69054 * 23 16 15 42 42 H 1.09003 * 109.47674 * 56.31554 * 24 12 11 43 43 H 1.09005 * 109.47972 * 296.27854 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 3.5420 -0.6150 -1.3125 6 6 4.1515 0.4422 -1.9707 7 6 5.5315 0.5091 -2.0037 8 7 6.2661 -0.4225 -1.4280 9 6 5.7206 -1.4447 -0.7982 10 6 4.3471 -1.5752 -0.7190 11 7 2.0196 -0.6924 1.1995 12 6 2.8818 0.1872 2.0001 13 1 3.4934 0.7976 1.3357 14 6 2.0123 1.0983 2.8683 15 6 2.9119 2.0822 3.6326 16 6 3.9412 1.2849 4.4028 17 6 4.1385 1.5000 5.7503 18 7 5.1236 0.8934 6.3757 19 14 3.0018 2.6471 6.6893 20 1 3.4199 2.7019 8.1133 21 1 3.0746 4.0081 6.0995 22 1 1.6077 2.1435 6.6017 23 6 4.7528 0.2501 3.6555 24 6 3.7904 -0.6634 2.8892 25 1 -0.3634 -1.0254 0.0677 26 1 -0.3634 0.5714 0.8541 27 1 -0.3632 0.4542 -0.9219 28 1 1.7516 -1.7716 -1.2054 29 1 1.6055 -0.2619 -2.1369 30 1 3.5553 1.2056 -2.4484 31 1 6.0140 1.3319 -2.5102 32 1 6.3548 -2.1882 -0.3382 33 1 3.9064 -2.4144 -0.2014 34 1 2.5009 -1.5446 0.9541 35 1 1.3231 1.6555 2.2339 36 1 1.4462 0.4934 3.5767 37 1 2.3089 2.6683 4.3261 38 1 3.4144 2.7457 2.9288 39 1 5.7625 0.3628 5.8745 40 1 5.4227 0.7470 2.9537 41 1 5.3331 -0.3414 4.3636 42 1 4.3614 -1.3549 2.2694 43 1 3.1824 -1.2266 3.5972 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001256721637.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:02 Heat of formation + Delta-G solvation = -10.533093 kcal Electronic energy + Delta-G solvation = -21940.976884 eV Core-core repulsion = 18983.765028 eV Total energy + Delta-G solvation = -2957.211856 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.28956 -39.53839 -37.36594 -34.76318 -33.33615 -32.22071 -31.79754 -30.90182 -28.06959 -27.63547 -24.46447 -24.03213 -23.31474 -22.92544 -21.38698 -20.95491 -18.49109 -17.68269 -17.40812 -16.83699 -16.60862 -16.11550 -15.78620 -15.69030 -14.87150 -14.68497 -14.63305 -14.57940 -14.31798 -13.86396 -13.61286 -13.49042 -13.15416 -12.84820 -12.62310 -12.55849 -12.39375 -12.30020 -12.00403 -11.99578 -11.86735 -11.76415 -11.38264 -11.00031 -10.53296 -10.51785 -10.45170 -10.28969 -10.11275 -9.26770 -8.60507 -6.17736 0.17871 0.27649 1.48946 1.55264 1.75019 2.54114 2.83129 3.06840 3.28401 3.54283 3.63570 3.81404 3.96152 4.08204 4.13010 4.18850 4.22149 4.36834 4.46827 4.51990 4.66132 4.68077 4.72832 4.83343 4.86233 4.92993 4.95201 4.95670 5.03648 5.04017 5.11572 5.17492 5.22736 5.23780 5.26272 5.39401 5.50408 5.51514 5.74953 5.77498 6.05109 6.22825 6.24714 6.58658 6.72327 7.01344 7.51625 8.76232 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.019426 B = 0.005741 C = 0.004903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.037596 B = 4876.283716 C = 5709.350041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.087 3.913 3 H 0.049 0.951 4 C -0.092 4.092 5 C -0.045 4.045 6 C -0.174 4.174 7 C 0.083 3.917 8 N -0.521 5.521 9 C 0.084 3.916 10 C -0.176 4.176 11 N -0.681 5.681 12 C 0.125 3.875 13 H 0.012 0.988 14 C -0.086 4.086 15 C -0.011 4.011 16 C -0.573 4.573 17 C -0.019 4.019 18 N -0.943 5.943 19 Si 1.095 2.905 20 H -0.293 1.293 21 H -0.269 1.269 22 H -0.265 1.265 23 C 0.003 3.997 24 C -0.092 4.092 25 H 0.062 0.938 26 H 0.044 0.956 27 H 0.074 0.926 28 H 0.094 0.906 29 H 0.105 0.895 30 H 0.156 0.844 31 H 0.172 0.828 32 H 0.163 0.837 33 H 0.147 0.853 34 H 0.340 0.660 35 H 0.051 0.949 36 H 0.045 0.955 37 H 0.031 0.969 38 H 0.006 0.994 39 H 0.257 0.743 40 H -0.014 1.014 41 H 0.011 0.989 42 H 0.045 0.955 43 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.406 -3.185 -18.506 20.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.022 4.022 3 H 0.067 0.933 4 C -0.130 4.130 5 C -0.053 4.053 6 C -0.194 4.194 7 C -0.073 4.073 8 N -0.231 5.231 9 C -0.072 4.072 10 C -0.195 4.195 11 N -0.314 5.314 12 C 0.016 3.984 13 H 0.030 0.970 14 C -0.125 4.125 15 C -0.049 4.049 16 C -0.592 4.592 17 C -0.217 4.217 18 N -0.581 5.581 19 Si 0.919 3.081 20 H -0.220 1.220 21 H -0.194 1.194 22 H -0.190 1.190 23 C -0.035 4.035 24 C -0.130 4.130 25 H 0.081 0.919 26 H 0.063 0.937 27 H 0.093 0.907 28 H 0.113 0.887 29 H 0.124 0.876 30 H 0.174 0.826 31 H 0.189 0.811 32 H 0.180 0.820 33 H 0.165 0.835 34 H 0.160 0.840 35 H 0.069 0.931 36 H 0.064 0.936 37 H 0.049 0.951 38 H 0.024 0.976 39 H 0.068 0.932 40 H 0.004 0.996 41 H 0.029 0.971 42 H 0.064 0.936 43 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -8.399 -2.431 -16.690 18.842 hybrid contribution 1.104 -0.709 -1.544 2.026 sum -7.295 -3.140 -18.233 19.888 Atomic orbital electron populations 1.21751 0.93005 1.02433 1.01608 1.21664 0.96712 0.96472 0.87401 0.93262 1.21217 0.88738 1.03337 0.99735 1.20605 0.97393 0.93462 0.93851 1.22325 0.96173 0.99547 1.01308 1.23157 0.91677 0.96789 0.95697 1.67650 1.42319 1.03434 1.09663 1.23026 0.93812 0.95373 0.94996 1.22261 0.94846 1.01177 1.01263 1.60706 1.42341 1.07567 1.20759 1.21042 0.91537 0.92843 0.92978 0.96992 1.21527 0.96800 0.96890 0.97272 1.19689 0.94658 0.94878 0.95691 1.21599 1.20694 1.20852 0.96102 1.27018 0.99241 0.99145 0.96321 1.70915 1.15189 1.32499 1.39540 0.83204 0.75008 0.75258 0.74673 1.22010 1.19429 1.19004 1.19360 0.94607 0.94994 0.94565 1.21506 0.97081 0.96986 0.97431 0.91902 0.93680 0.90746 0.88712 0.87628 0.82595 0.81132 0.82012 0.83532 0.84012 0.93060 0.93607 0.95073 0.97592 0.93188 0.99574 0.97060 0.93604 0.93751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.48 9.52 71.98 0.69 -1.80 16 2 C 0.09 1.95 2.37 44.91 0.11 2.06 16 3 H 0.05 1.28 7.26 -2.39 -0.02 1.27 16 4 C -0.09 -1.55 4.75 29.85 0.14 -1.41 16 5 C -0.04 -0.96 4.98 -19.67 -0.10 -1.06 16 6 C -0.17 -3.70 9.82 22.36 0.22 -3.48 16 7 C 0.08 2.03 11.18 84.68 0.95 2.97 16 8 N -0.52 -15.18 10.36 -195.84 -2.03 -17.21 16 9 C 0.08 2.22 11.18 84.68 0.95 3.17 16 10 C -0.18 -4.05 8.84 22.36 0.20 -3.86 16 11 N -0.68 -19.31 6.03 -469.61 -2.83 -22.14 16 12 C 0.13 4.65 2.19 44.89 0.10 4.75 16 13 H 0.01 0.49 7.62 -2.39 -0.02 0.47 16 14 C -0.09 -3.49 5.45 30.81 0.17 -3.32 16 15 C -0.01 -0.52 5.66 30.25 0.17 -0.34 16 16 C -0.57 -31.23 5.49 -16.17 -0.09 -31.32 16 17 C -0.02 -1.11 5.46 84.65 0.46 -0.65 16 18 N -0.94 -58.50 13.60 21.45 0.29 -58.21 16 19 Si 1.10 50.97 27.18 68.60 1.86 52.83 16 20 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 21 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 22 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 23 C 0.00 0.15 5.83 30.10 0.18 0.32 16 24 C -0.09 -3.87 5.27 30.66 0.16 -3.71 16 25 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.09 1.39 8.09 -2.39 -0.02 1.37 16 29 H 0.11 1.32 8.10 -2.39 -0.02 1.30 16 30 H 0.16 2.42 8.06 -2.91 -0.02 2.40 16 31 H 0.17 3.24 8.06 -2.91 -0.02 3.22 16 32 H 0.16 3.70 8.06 -2.91 -0.02 3.68 16 33 H 0.15 2.83 7.16 -2.91 -0.02 2.81 16 34 H 0.34 8.80 5.63 -89.69 -0.50 8.30 16 35 H 0.05 1.82 7.84 -2.39 -0.02 1.80 16 36 H 0.05 1.95 8.14 -2.38 -0.02 1.93 16 37 H 0.03 1.40 5.14 -2.39 -0.01 1.39 16 38 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 39 H 0.26 16.13 6.54 -92.71 -0.61 15.52 16 40 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 41 H 0.01 0.61 6.06 -2.39 -0.01 0.60 16 42 H 0.05 1.71 8.05 -2.39 -0.02 1.69 16 43 H 0.04 1.97 8.14 -2.38 -0.02 1.95 16 Total: -1.00 -67.08 335.13 2.23 -64.84 By element: Atomic # 1 Polarization: 16.91 SS G_CDS: 0.64 Total: 17.55 kcal Atomic # 6 Polarization: -41.96 SS G_CDS: 4.29 Total: -37.67 kcal Atomic # 7 Polarization: -92.99 SS G_CDS: -4.57 Total: -97.56 kcal Atomic # 14 Polarization: 50.97 SS G_CDS: 1.86 Total: 52.83 kcal Total: -67.08 2.23 -64.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256721637.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.310 kcal (2) G-P(sol) polarization free energy of solvation -67.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds