Wall clock time and date at job start Mon Mar 30 2020 01:13:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.47250 * 2 1 4 4 C 1.52997 * 109.47024 * 120.00041 * 2 1 3 5 5 C 1.50702 * 109.47345 * 185.00158 * 4 2 1 6 6 C 1.38681 * 120.41735 * 269.72095 * 5 4 2 7 7 C 1.38626 * 118.42014 * 179.78347 * 6 5 4 8 8 C 1.38231 * 119.15751 * 0.50930 * 7 6 5 9 9 N 1.31852 * 120.76576 * 359.73084 * 8 7 6 10 10 C 1.31881 * 121.72809 * 359.97438 * 9 8 7 11 11 N 1.46906 * 109.47378 * 239.99874 * 2 1 3 12 12 C 1.46900 * 110.99927 * 85.00135 * 11 2 1 13 13 H 1.09003 * 109.41393 * 325.00191 * 12 11 2 14 14 C 1.52963 * 109.41344 * 84.85824 * 12 11 2 15 15 C 1.53241 * 109.39794 * 183.77489 * 14 12 11 16 16 C 1.51266 * 108.48419 * 305.26563 * 15 14 12 17 17 C 1.37875 * 120.85031 * 231.37083 * 16 15 14 18 18 N 1.31513 * 119.99922 * 180.02562 * 17 16 15 19 19 Si 1.86798 * 120.00031 * 0.02562 * 17 16 15 20 20 H 1.48507 * 109.46862 * 90.00271 * 19 17 16 21 21 H 1.48500 * 109.47166 * 209.99968 * 19 17 16 22 22 H 1.48497 * 109.47384 * 330.00747 * 19 17 16 23 23 C 1.51266 * 118.29849 * 51.39065 * 16 15 14 24 24 C 1.52959 * 109.41407 * 205.14127 * 12 11 2 25 25 H 1.09004 * 109.46862 * 60.00023 * 1 2 3 26 26 H 1.09004 * 109.46998 * 179.97438 * 1 2 3 27 27 H 1.08992 * 109.47715 * 300.00076 * 1 2 3 28 28 H 1.09001 * 109.47272 * 305.00024 * 4 2 1 29 29 H 1.08994 * 109.47445 * 65.00029 * 4 2 1 30 30 H 1.07995 * 120.78960 * 0.02562 * 6 5 4 31 31 H 1.07995 * 120.42177 * 180.26685 * 7 6 5 32 32 H 1.08003 * 119.61326 * 179.74732 * 8 7 6 33 33 H 1.08002 * 119.61856 * 180.02562 * 10 9 8 34 34 H 1.00902 * 110.99915 * 208.95662 * 11 2 1 35 35 H 1.08997 * 109.48189 * 303.68688 * 14 12 11 36 36 H 1.08996 * 109.48131 * 63.72315 * 14 12 11 37 37 H 1.09006 * 109.61552 * 185.59130 * 15 14 12 38 38 H 1.08997 * 109.84381 * 65.08213 * 15 14 12 39 39 H 0.96996 * 120.00213 * 179.97438 * 18 17 16 40 40 H 1.09006 * 109.62561 * 188.93768 * 23 16 15 41 41 H 1.09001 * 109.63039 * 68.37039 * 23 16 15 42 42 H 1.08998 * 109.48259 * 296.27310 * 24 12 11 43 43 H 1.09002 * 109.48114 * 56.30257 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2492 5 6 3.5418 -0.6149 1.3128 6 6 4.3399 -1.5828 0.7216 7 6 5.7166 -1.4416 0.8012 8 6 6.2444 -0.3540 1.4716 9 7 5.4548 0.5445 2.0263 10 6 4.1412 0.4454 1.9654 11 7 2.0197 -0.6925 -1.1994 12 6 2.0825 0.2225 -2.3469 13 1 1.2573 0.9324 -2.2898 14 6 3.4097 0.9825 -2.3191 15 6 3.4354 2.0039 -3.4612 16 6 3.1613 1.2782 -4.7598 17 6 3.9975 1.4311 -5.8453 18 7 3.7429 0.7926 -6.9665 19 14 5.4918 2.5453 -5.7235 20 1 6.6587 1.7582 -5.2499 21 1 5.7915 3.1194 -7.0599 22 1 5.2134 3.6438 -4.7639 23 6 1.9460 0.3809 -4.8371 24 6 1.9735 -0.5805 -3.6442 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.6053 -0.2618 2.1370 29 1 1.7516 -1.7715 1.2056 30 1 3.8993 -2.4244 0.2080 31 1 6.3686 -2.1739 0.3485 32 1 7.3160 -0.2389 1.5416 33 1 3.5267 1.2014 2.4316 34 1 2.9173 -1.1206 -1.0287 35 1 3.5115 1.5016 -1.3661 36 1 4.2338 0.2794 -2.4400 37 1 4.4161 2.4776 -3.5065 38 1 2.6699 2.7621 -3.2967 39 1 4.3310 0.9004 -7.7303 40 1 1.9696 -0.1883 -5.7665 41 1 1.0405 0.9865 -4.7984 42 1 2.8323 -1.2457 -3.7332 43 1 1.0568 -1.1700 -3.6308 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001258611665.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:25 Heat of formation + Delta-G solvation = 8.729364 kcal Electronic energy + Delta-G solvation = -21753.768094 eV Core-core repulsion = 18797.391522 eV Total energy + Delta-G solvation = -2956.376573 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.34412 -38.06809 -35.71831 -33.00379 -32.21566 -31.44973 -29.81804 -29.46725 -26.83821 -26.15616 -23.63114 -22.55531 -21.73944 -21.19435 -20.14378 -19.28775 -17.14621 -16.45188 -16.26290 -15.38979 -15.25544 -14.84751 -14.38299 -13.90391 -13.79585 -13.15186 -13.01082 -12.97289 -12.81400 -12.37695 -12.25552 -12.14178 -11.99118 -11.81861 -11.36844 -11.21903 -10.98003 -10.91026 -10.71666 -10.37893 -10.09048 -9.83710 -9.74905 -9.58896 -9.47580 -8.98789 -8.84610 -8.72291 -8.44368 -7.80144 -6.07548 -3.97571 1.05217 1.23086 3.26740 3.35604 3.37768 3.75209 4.37844 4.39767 4.50628 4.66723 4.78963 4.92955 5.00288 5.06097 5.20134 5.31767 5.37850 5.58833 5.68159 5.73135 5.77604 5.84333 5.92886 5.95415 6.05796 6.14425 6.24175 6.27320 6.39978 6.52054 6.64931 6.75846 6.83248 6.90297 6.95795 7.06994 7.22799 7.41709 7.61103 7.68911 7.74856 7.89900 7.91914 7.94338 8.43695 9.00734 9.57516 11.02068 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.016919 B = 0.005926 C = 0.004867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.589290 B = 4724.135114 C = 5751.941790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.085 3.915 3 H 0.044 0.956 4 C -0.079 4.079 5 C -0.132 4.132 6 C -0.074 4.074 7 C -0.166 4.166 8 C 0.090 3.910 9 N -0.484 5.484 10 C 0.099 3.901 11 N -0.687 5.687 12 C 0.100 3.900 13 H 0.065 0.935 14 C -0.129 4.129 15 C -0.011 4.011 16 C -0.485 4.485 17 C 0.075 3.925 18 N -0.890 5.890 19 Si 0.885 3.115 20 H -0.279 1.279 21 H -0.290 1.290 22 H -0.268 1.268 23 C 0.009 3.991 24 C -0.092 4.092 25 H 0.058 0.942 26 H 0.059 0.941 27 H 0.050 0.950 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.138 0.862 31 H 0.135 0.865 32 H 0.153 0.847 33 H 0.151 0.849 34 H 0.333 0.667 35 H 0.024 0.976 36 H 0.048 0.952 37 H 0.026 0.974 38 H 0.015 0.985 39 H 0.263 0.737 40 H 0.057 0.943 41 H 0.002 0.998 42 H 0.045 0.955 43 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.796 -4.467 16.594 17.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.025 4.025 3 H 0.062 0.938 4 C -0.118 4.118 5 C -0.134 4.134 6 C -0.100 4.100 7 C -0.186 4.186 8 C -0.067 4.067 9 N -0.192 5.192 10 C -0.058 4.058 11 N -0.319 5.319 12 C -0.009 4.009 13 H 0.083 0.917 14 C -0.169 4.169 15 C -0.050 4.050 16 C -0.504 4.504 17 C -0.127 4.127 18 N -0.528 5.528 19 Si 0.714 3.286 20 H -0.205 1.205 21 H -0.216 1.216 22 H -0.193 1.193 23 C -0.029 4.029 24 C -0.131 4.131 25 H 0.077 0.923 26 H 0.078 0.922 27 H 0.069 0.931 28 H 0.097 0.903 29 H 0.101 0.899 30 H 0.155 0.845 31 H 0.153 0.847 32 H 0.170 0.830 33 H 0.169 0.831 34 H 0.153 0.847 35 H 0.043 0.957 36 H 0.067 0.933 37 H 0.045 0.955 38 H 0.033 0.967 39 H 0.073 0.927 40 H 0.075 0.925 41 H 0.020 0.980 42 H 0.064 0.936 43 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -0.977 -4.044 16.681 17.192 hybrid contribution 1.448 0.408 -0.304 1.535 sum 0.472 -3.636 16.377 16.782 Atomic orbital electron populations 1.21777 0.94462 1.02118 1.01147 1.21468 0.95664 0.96172 0.89187 0.93804 1.20797 0.89646 1.02622 0.98714 1.20961 0.97354 0.96123 0.98956 1.21583 0.93593 0.98469 0.96383 1.22169 0.95973 0.99910 1.00542 1.22734 0.99991 0.90204 0.93770 1.67655 1.05556 1.27694 1.18300 1.22633 0.90859 0.96105 0.96185 1.60968 1.33081 1.33724 1.04108 1.21509 0.96568 0.92754 0.90040 0.91689 1.22177 0.97618 0.99445 0.97641 1.19685 0.96685 0.94296 0.94288 1.20047 1.09508 1.25901 0.94964 1.24832 0.97407 0.95462 0.95021 1.69835 1.38219 1.42110 1.02647 0.86705 0.83343 0.81614 0.76960 1.20545 1.21597 1.19347 1.19389 0.94658 0.94192 0.94637 1.21567 0.98933 0.98002 0.94574 0.92343 0.92151 0.93081 0.90250 0.89942 0.84470 0.84725 0.82988 0.83142 0.84728 0.95744 0.93333 0.95550 0.96674 0.92672 0.92471 0.97979 0.93643 0.94546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.64 9.40 37.15 0.35 -1.29 16 2 C 0.09 1.12 2.43 -67.71 -0.16 0.96 16 3 H 0.04 0.65 7.08 -51.93 -0.37 0.28 16 4 C -0.08 -0.84 5.00 -27.88 -0.14 -0.98 16 5 C -0.13 -1.55 4.84 -104.48 -0.51 -2.06 16 6 C -0.07 -0.86 8.20 -39.27 -0.32 -1.18 16 7 C -0.17 -1.86 10.11 -39.44 -0.40 -2.26 16 8 C 0.09 1.08 11.18 -17.55 -0.20 0.89 16 9 N -0.48 -6.67 10.36 -13.25 -0.14 -6.81 16 10 C 0.10 1.24 10.86 -17.55 -0.19 1.05 16 11 N -0.69 -10.82 6.05 -99.78 -0.60 -11.43 16 12 C 0.10 1.93 2.18 -67.75 -0.15 1.78 16 13 H 0.06 1.30 7.11 -51.93 -0.37 0.93 16 14 C -0.13 -2.69 5.17 -26.63 -0.14 -2.83 16 15 C -0.01 -0.27 5.60 -27.48 -0.15 -0.43 16 16 C -0.49 -12.98 5.51 -98.93 -0.55 -13.52 16 17 C 0.07 2.09 5.46 -17.82 -0.10 1.99 16 18 N -0.89 -25.94 12.73 55.43 0.71 -25.23 16 19 Si 0.89 21.61 27.27 -169.99 -4.64 16.98 16 20 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 21 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 22 H -0.27 -6.41 6.46 56.52 0.37 -6.05 16 23 C 0.01 0.23 5.97 -27.49 -0.16 0.07 16 24 C -0.09 -2.00 5.54 -26.63 -0.15 -2.15 16 25 H 0.06 0.79 7.42 -51.93 -0.39 0.40 16 26 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.08 0.69 8.09 -51.93 -0.42 0.27 16 29 H 0.08 0.83 8.09 -51.93 -0.42 0.41 16 30 H 0.14 1.41 7.59 -52.49 -0.40 1.02 16 31 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 32 H 0.15 1.45 8.06 -52.48 -0.42 1.02 16 33 H 0.15 1.59 8.06 -52.49 -0.42 1.16 16 34 H 0.33 5.13 5.31 -39.29 -0.21 4.92 16 35 H 0.02 0.47 7.37 -51.93 -0.38 0.09 16 36 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.03 0.63 4.78 -51.93 -0.25 0.39 16 38 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 40 H 0.06 1.58 7.07 -51.93 -0.37 1.22 16 41 H 0.00 0.05 8.14 -51.93 -0.42 -0.38 16 42 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 333.95 15.07 5.03 5.03 Total: -1.00 -29.62 333.95 -9.57 -39.19 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -6.97 Total: 2.23 kcal Atomic # 6 Polarization: -17.00 SS G_CDS: -2.96 Total: -19.96 kcal Atomic # 7 Polarization: -43.43 SS G_CDS: -0.04 Total: -43.46 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.64 Total: 16.98 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -29.62 -9.57 -39.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001258611665.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.915 kcal (2) G-P(sol) polarization free energy of solvation -29.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.186 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds