Wall clock time and date at job start Mon Mar 30 2020 01:13:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.47250 * 2 1 4 4 C 1.52997 * 109.47024 * 120.00041 * 2 1 3 5 5 C 1.50702 * 109.47345 * 185.00158 * 4 2 1 6 6 C 1.38681 * 120.41735 * 269.72095 * 5 4 2 7 7 C 1.38626 * 118.42014 * 179.78347 * 6 5 4 8 8 C 1.38231 * 119.15751 * 0.50930 * 7 6 5 9 9 N 1.31852 * 120.76576 * 359.73084 * 8 7 6 10 10 C 1.31881 * 121.72809 * 359.97438 * 9 8 7 11 11 N 1.46906 * 109.47378 * 239.99874 * 2 1 3 12 12 C 1.46900 * 110.99927 * 85.00135 * 11 2 1 13 13 H 1.09003 * 109.41393 * 325.00191 * 12 11 2 14 14 C 1.52963 * 109.41344 * 84.85824 * 12 11 2 15 15 C 1.53241 * 109.39794 * 183.77489 * 14 12 11 16 16 C 1.51266 * 108.48419 * 305.26563 * 15 14 12 17 17 C 1.37875 * 120.85031 * 231.37083 * 16 15 14 18 18 N 1.31513 * 119.99922 * 180.02562 * 17 16 15 19 19 Si 1.86798 * 120.00031 * 0.02562 * 17 16 15 20 20 H 1.48507 * 109.46862 * 90.00271 * 19 17 16 21 21 H 1.48500 * 109.47166 * 209.99968 * 19 17 16 22 22 H 1.48497 * 109.47384 * 330.00747 * 19 17 16 23 23 C 1.51266 * 118.29849 * 51.39065 * 16 15 14 24 24 C 1.52959 * 109.41407 * 205.14127 * 12 11 2 25 25 H 1.09004 * 109.46862 * 60.00023 * 1 2 3 26 26 H 1.09004 * 109.46998 * 179.97438 * 1 2 3 27 27 H 1.08992 * 109.47715 * 300.00076 * 1 2 3 28 28 H 1.09001 * 109.47272 * 305.00024 * 4 2 1 29 29 H 1.08994 * 109.47445 * 65.00029 * 4 2 1 30 30 H 1.07995 * 120.78960 * 0.02562 * 6 5 4 31 31 H 1.07995 * 120.42177 * 180.26685 * 7 6 5 32 32 H 1.08003 * 119.61326 * 179.74732 * 8 7 6 33 33 H 1.08002 * 119.61856 * 180.02562 * 10 9 8 34 34 H 1.00902 * 110.99915 * 208.95662 * 11 2 1 35 35 H 1.08997 * 109.48189 * 303.68688 * 14 12 11 36 36 H 1.08996 * 109.48131 * 63.72315 * 14 12 11 37 37 H 1.09006 * 109.61552 * 185.59130 * 15 14 12 38 38 H 1.08997 * 109.84381 * 65.08213 * 15 14 12 39 39 H 0.96996 * 120.00213 * 179.97438 * 18 17 16 40 40 H 1.09006 * 109.62561 * 188.93768 * 23 16 15 41 41 H 1.09001 * 109.63039 * 68.37039 * 23 16 15 42 42 H 1.08998 * 109.48259 * 296.27310 * 24 12 11 43 43 H 1.09002 * 109.48114 * 56.30257 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2492 5 6 3.5418 -0.6149 1.3128 6 6 4.3399 -1.5828 0.7216 7 6 5.7166 -1.4416 0.8012 8 6 6.2444 -0.3540 1.4716 9 7 5.4548 0.5445 2.0263 10 6 4.1412 0.4454 1.9654 11 7 2.0197 -0.6925 -1.1994 12 6 2.0825 0.2225 -2.3469 13 1 1.2573 0.9324 -2.2898 14 6 3.4097 0.9825 -2.3191 15 6 3.4354 2.0039 -3.4612 16 6 3.1613 1.2782 -4.7598 17 6 3.9975 1.4311 -5.8453 18 7 3.7429 0.7926 -6.9665 19 14 5.4918 2.5453 -5.7235 20 1 6.6587 1.7582 -5.2499 21 1 5.7915 3.1194 -7.0599 22 1 5.2134 3.6438 -4.7639 23 6 1.9460 0.3809 -4.8371 24 6 1.9735 -0.5805 -3.6442 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.6053 -0.2618 2.1370 29 1 1.7516 -1.7715 1.2056 30 1 3.8993 -2.4244 0.2080 31 1 6.3686 -2.1739 0.3485 32 1 7.3160 -0.2389 1.5416 33 1 3.5267 1.2014 2.4316 34 1 2.9173 -1.1206 -1.0287 35 1 3.5115 1.5016 -1.3661 36 1 4.2338 0.2794 -2.4400 37 1 4.4161 2.4776 -3.5065 38 1 2.6699 2.7621 -3.2967 39 1 4.3310 0.9004 -7.7303 40 1 1.9696 -0.1883 -5.7665 41 1 1.0405 0.9865 -4.7984 42 1 2.8323 -1.2457 -3.7332 43 1 1.0568 -1.1700 -3.6308 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001258611665.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:24 Heat of formation + Delta-G solvation = -8.427306 kcal Electronic energy + Delta-G solvation = -21754.512063 eV Core-core repulsion = 18797.391522 eV Total energy + Delta-G solvation = -2957.120542 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.24362 -39.51186 -37.14995 -34.57201 -33.32696 -32.63766 -31.51026 -31.04376 -28.00255 -27.56169 -24.52601 -23.94155 -23.21173 -22.93894 -21.24730 -21.00297 -18.15000 -17.99084 -17.37333 -16.56029 -16.37284 -16.30100 -16.14041 -15.02805 -14.93090 -14.71988 -14.54481 -14.15765 -14.04912 -14.02191 -13.78658 -13.37451 -13.24692 -12.89542 -12.80813 -12.74465 -12.65797 -12.33516 -11.99955 -11.98362 -11.82979 -11.55815 -11.43057 -10.79750 -10.71325 -10.61128 -10.55678 -10.37477 -9.84741 -9.18234 -8.18815 -6.12247 0.18234 0.35050 1.32576 1.36215 1.44614 2.37091 2.86257 3.05731 3.34014 3.55512 3.82033 3.94891 4.01935 4.08201 4.15622 4.18113 4.24743 4.41216 4.49625 4.55474 4.69325 4.69936 4.85327 4.89367 4.93297 4.98483 5.00670 5.04094 5.07518 5.16317 5.18736 5.22320 5.29091 5.38427 5.44898 5.49403 5.53287 5.61615 5.77666 5.80656 5.84750 6.27828 6.34806 6.60965 6.94414 7.03598 7.45107 8.92196 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.016919 B = 0.005926 C = 0.004867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.589290 B = 4724.135114 C = 5751.941790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.084 3.916 3 H 0.031 0.969 4 C -0.070 4.070 5 C -0.136 4.136 6 C -0.085 4.085 7 C -0.170 4.170 8 C 0.075 3.925 9 N -0.512 5.512 10 C 0.085 3.915 11 N -0.682 5.682 12 C 0.114 3.886 13 H 0.061 0.939 14 C -0.118 4.118 15 C -0.014 4.014 16 C -0.496 4.496 17 C 0.021 3.979 18 N -0.930 5.930 19 Si 0.937 3.063 20 H -0.275 1.275 21 H -0.289 1.289 22 H -0.259 1.259 23 C 0.006 3.994 24 C -0.081 4.081 25 H 0.038 0.962 26 H 0.064 0.936 27 H 0.075 0.925 28 H 0.103 0.897 29 H 0.092 0.908 30 H 0.149 0.851 31 H 0.156 0.844 32 H 0.171 0.829 33 H 0.165 0.835 34 H 0.337 0.663 35 H 0.040 0.960 36 H 0.039 0.961 37 H 0.024 0.976 38 H 0.017 0.983 39 H 0.263 0.737 40 H 0.024 0.976 41 H -0.002 1.002 42 H 0.033 0.967 43 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.796 -4.607 18.855 19.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.026 4.026 3 H 0.049 0.951 4 C -0.108 4.108 5 C -0.138 4.138 6 C -0.111 4.111 7 C -0.189 4.189 8 C -0.081 4.081 9 N -0.221 5.221 10 C -0.072 4.072 11 N -0.314 5.314 12 C 0.004 3.996 13 H 0.079 0.921 14 C -0.157 4.157 15 C -0.053 4.053 16 C -0.515 4.515 17 C -0.177 4.177 18 N -0.570 5.570 19 Si 0.764 3.236 20 H -0.201 1.201 21 H -0.216 1.216 22 H -0.183 1.183 23 C -0.032 4.032 24 C -0.120 4.120 25 H 0.057 0.943 26 H 0.083 0.917 27 H 0.094 0.906 28 H 0.121 0.879 29 H 0.110 0.890 30 H 0.166 0.834 31 H 0.173 0.827 32 H 0.188 0.812 33 H 0.182 0.818 34 H 0.157 0.843 35 H 0.059 0.941 36 H 0.058 0.942 37 H 0.042 0.958 38 H 0.035 0.965 39 H 0.072 0.928 40 H 0.043 0.957 41 H 0.016 0.984 42 H 0.052 0.948 43 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -0.982 -4.184 18.969 19.450 hybrid contribution 1.394 0.429 -0.991 1.764 sum 0.412 -3.755 17.978 18.371 Atomic orbital electron populations 1.21760 0.93410 1.02537 1.01476 1.21569 0.96421 0.95537 0.89034 0.95054 1.20755 0.88803 1.03081 0.98146 1.21093 0.98017 0.95931 0.98775 1.21857 0.93959 0.98876 0.96386 1.22452 0.96349 1.00037 1.00095 1.23132 1.00945 0.90289 0.93738 1.67657 1.06366 1.28719 1.19316 1.22950 0.90818 0.96831 0.96575 1.60885 1.33340 1.32910 1.04300 1.21190 0.95498 0.92563 0.90354 0.92094 1.22032 0.98171 0.98562 0.96982 1.19709 0.96525 0.94896 0.94122 1.20623 1.09389 1.25515 0.95975 1.25578 1.00212 0.96976 0.94898 1.69967 1.39521 1.44082 1.03425 0.85858 0.80431 0.80292 0.77029 1.20065 1.21568 1.18322 1.19353 0.94282 0.94557 0.94982 1.21372 0.99008 0.97195 0.94414 0.94254 0.91668 0.90570 0.87850 0.88970 0.83360 0.82665 0.81225 0.81769 0.84304 0.94126 0.94242 0.95767 0.96457 0.92819 0.95701 0.98389 0.94830 0.93266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.82 9.40 71.98 0.68 -2.14 16 2 C 0.08 1.97 2.43 44.91 0.11 2.08 16 3 H 0.03 0.84 7.08 -2.39 -0.02 0.82 16 4 C -0.07 -1.23 5.00 29.85 0.15 -1.08 16 5 C -0.14 -2.86 4.84 -19.77 -0.10 -2.95 16 6 C -0.08 -1.76 8.20 22.47 0.18 -1.58 16 7 C -0.17 -3.45 10.11 22.36 0.23 -3.23 16 8 C 0.08 1.69 11.18 84.69 0.95 2.64 16 9 N -0.51 -13.35 10.36 -195.84 -2.03 -15.37 16 10 C 0.08 1.96 10.86 84.67 0.92 2.88 16 11 N -0.68 -19.90 6.05 -469.60 -2.84 -22.74 16 12 C 0.11 4.21 2.18 44.89 0.10 4.30 16 13 H 0.06 2.34 7.11 -2.39 -0.02 2.32 16 14 C -0.12 -4.72 5.17 30.66 0.16 -4.56 16 15 C -0.01 -0.67 5.60 30.11 0.17 -0.50 16 16 C -0.50 -26.65 5.51 -16.17 -0.09 -26.74 16 17 C 0.02 1.20 5.46 84.65 0.46 1.66 16 18 N -0.93 -55.53 12.73 21.45 0.27 -55.26 16 19 Si 0.94 44.40 27.27 68.60 1.87 46.27 16 20 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 21 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 22 H -0.26 -11.72 6.46 99.48 0.64 -11.08 16 23 C 0.01 0.32 5.97 30.10 0.18 0.50 16 24 C -0.08 -3.49 5.54 30.66 0.17 -3.32 16 25 H 0.04 0.97 7.42 -2.38 -0.02 0.96 16 26 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.10 1.37 8.09 -2.39 -0.02 1.35 16 29 H 0.09 1.49 8.09 -2.39 -0.02 1.47 16 30 H 0.15 2.67 7.59 -2.91 -0.02 2.65 16 31 H 0.16 2.38 8.06 -2.91 -0.02 2.36 16 32 H 0.17 2.96 8.06 -2.91 -0.02 2.94 16 33 H 0.17 3.10 8.06 -2.91 -0.02 3.07 16 34 H 0.34 9.54 5.31 -89.69 -0.48 9.06 16 35 H 0.04 1.49 7.37 -2.39 -0.02 1.48 16 36 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.02 1.12 4.78 -2.38 -0.01 1.11 16 38 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 39 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 40 H 0.02 1.41 7.07 -2.38 -0.02 1.39 16 41 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 42 H 0.03 1.49 8.14 -2.39 -0.02 1.48 16 43 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 Total: -1.00 -63.81 333.95 1.98 -61.83 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: 0.45 Total: 17.31 kcal Atomic # 6 Polarization: -36.29 SS G_CDS: 4.26 Total: -32.03 kcal Atomic # 7 Polarization: -88.78 SS G_CDS: -4.60 Total: -93.37 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 1.87 Total: 46.27 kcal Total: -63.81 1.98 -61.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001258611665.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.400 kcal (2) G-P(sol) polarization free energy of solvation -63.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds