Wall clock time and date at job start Mon Mar 30 2020 01:14:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46904 * 109.46867 * 2 1 4 4 C 1.46837 * 111.00325 * 45.79303 * 3 2 1 5 5 C 1.53039 * 109.52491 * 185.83923 * 4 3 2 6 6 C 1.53115 * 109.27589 * 300.81696 * 5 4 3 7 7 C 1.53121 * 109.16012 * 57.65904 * 6 5 4 8 8 H 1.08997 * 109.53771 * 62.30129 * 7 6 5 9 9 N 1.46498 * 109.49923 * 182.40106 * 7 6 5 10 10 C 1.38856 * 120.00300 * 274.79788 * 9 7 6 11 11 C 1.39562 * 119.84620 * 180.02562 * 10 9 7 12 12 C 1.36335 * 120.16452 * 180.02562 * 11 10 9 13 13 C 1.40885 * 119.83839 * 359.97438 * 12 11 10 14 14 C 1.41135 * 120.16257 * 180.02562 * 13 12 11 15 15 H 1.08005 * 119.99493 * 334.94092 * 14 13 12 16 16 C 1.39854 * 120.00228 * 154.94202 * 14 13 12 17 17 N 1.30906 * 120.00278 * 342.57943 * 16 14 13 18 18 Si 1.86803 * 120.00122 * 162.58036 * 16 14 13 19 19 H 1.48505 * 109.46892 * 265.59742 * 18 16 14 20 20 H 1.48497 * 109.47139 * 25.59334 * 18 16 14 21 21 H 1.48496 * 109.47486 * 145.59440 * 18 16 14 22 22 C 1.40889 * 119.68526 * 0.27792 * 13 12 11 23 23 C 1.36346 * 119.83670 * 359.44180 * 22 13 12 24 24 C 1.46853 * 110.99782 * 170.00568 * 3 2 1 25 25 H 1.08995 * 109.47272 * 60.00036 * 1 2 3 26 26 H 1.08999 * 109.46982 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47295 * 300.00072 * 1 2 3 28 28 H 1.08999 * 109.47295 * 239.99928 * 2 1 3 29 29 H 1.08995 * 109.47272 * 119.99964 * 2 1 3 30 30 H 1.09008 * 109.46185 * 305.85325 * 4 3 2 31 31 H 1.08998 * 109.46354 * 65.81842 * 4 3 2 32 32 H 1.09003 * 109.50143 * 60.76189 * 5 4 3 33 33 H 1.09005 * 109.50048 * 180.83464 * 5 4 3 34 34 H 1.08993 * 109.52515 * 297.74925 * 6 5 4 35 35 H 1.09007 * 109.52070 * 177.55633 * 6 5 4 36 36 H 0.97003 * 119.99552 * 94.80637 * 9 7 6 37 37 H 1.08004 * 119.92002 * 0.04090 * 11 10 9 38 38 H 1.08006 * 120.08389 * 180.02562 * 12 11 10 39 39 H 0.97004 * 120.00220 * 180.02562 * 17 16 14 40 40 H 1.08001 * 120.08104 * 179.70412 * 22 13 12 41 41 H 1.08001 * 119.92105 * 180.28059 * 23 22 13 42 42 H 1.08996 * 109.46600 * 54.14138 * 24 3 2 43 43 H 1.09000 * 109.44788 * 294.16691 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.2938 2.1998 0.9826 5 6 1.7264 3.6621 0.8539 6 6 3.2354 3.7657 1.0921 7 6 3.9654 2.8705 0.0870 8 1 3.7650 3.2205 -0.9256 9 7 5.4067 2.9196 0.3452 10 6 6.1770 3.9341 -0.2075 11 6 7.5497 3.9773 0.0402 12 6 8.3121 4.9708 -0.4987 13 6 7.7110 5.9551 -1.3079 14 6 8.4939 6.9863 -1.8697 15 1 9.4198 7.2798 -1.3974 16 6 8.0707 7.6282 -3.0380 17 7 7.1584 7.0738 -3.7957 18 14 8.8072 9.2767 -3.5172 19 1 7.9418 10.3717 -3.0098 20 1 10.1635 9.4034 -2.9262 21 1 8.9016 9.3654 -4.9965 22 6 6.3238 5.9082 -1.5493 23 6 5.5747 4.9055 -1.0084 24 6 3.4680 1.4312 0.2379 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 0.2222 2.1206 0.7995 31 1 1.5178 1.8419 1.9875 32 1 1.4901 4.0248 -0.1465 33 1 1.1984 4.2642 1.5935 34 1 3.4673 3.4397 2.1060 35 1 3.5551 4.7993 0.9587 36 1 5.8228 2.2432 0.9022 37 1 8.0094 3.2218 0.6602 38 1 9.3745 5.0028 -0.3065 39 1 6.8652 7.5189 -4.6062 40 1 5.8556 6.6621 -2.1647 41 1 4.5119 4.8656 -1.1963 42 1 3.9755 0.7937 -0.4860 43 1 3.6815 1.0769 1.2464 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001308674620.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:36 Heat of formation + Delta-G solvation = 21.398601 kcal Electronic energy + Delta-G solvation = -20973.622541 eV Core-core repulsion = 18017.795347 eV Total energy + Delta-G solvation = -2955.827194 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.43316 -37.72412 -35.39831 -33.61993 -32.50706 -30.62647 -29.50130 -29.27477 -27.62962 -24.91767 -23.97419 -22.95040 -21.48601 -20.91323 -19.92014 -19.39453 -17.16793 -16.33824 -16.24542 -15.19992 -14.97663 -14.93000 -14.46484 -13.96421 -13.80607 -13.70971 -13.31995 -12.79444 -12.58068 -12.36610 -12.06768 -12.01134 -11.96259 -11.70651 -11.46165 -11.33907 -11.03823 -11.02076 -10.88996 -10.62846 -10.55910 -10.30447 -10.24004 -9.64317 -9.22830 -9.16389 -8.51531 -8.38418 -7.44697 -6.59795 -6.34268 -3.99841 2.94613 3.14144 3.17959 3.21519 3.38863 3.66334 4.08716 4.45101 4.77563 4.82530 4.90025 4.94242 5.06360 5.11295 5.26117 5.32065 5.38754 5.48947 5.62013 5.71355 5.76546 5.83052 5.86222 5.90126 5.95965 6.10519 6.13314 6.31116 6.34827 6.46335 6.57555 6.91777 6.97518 7.01885 7.06759 7.24485 7.39802 7.60593 7.73458 7.88679 8.19631 8.33562 8.53882 8.74575 8.84495 9.10163 9.19441 10.41830 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.032071 B = 0.003558 C = 0.003409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.849428 B = 7868.336370 C = 8212.004726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.052 3.948 3 N -0.535 5.535 4 C 0.050 3.950 5 C -0.116 4.116 6 C -0.136 4.136 7 C 0.168 3.832 8 H 0.082 0.918 9 N -0.757 5.757 10 C 0.096 3.904 11 C -0.160 4.160 12 C -0.187 4.187 13 C 0.074 3.926 14 C -0.468 4.468 15 H 0.072 0.928 16 C 0.074 3.926 17 N -0.808 5.808 18 Si 0.902 3.098 19 H -0.271 1.271 20 H -0.265 1.265 21 H -0.280 1.280 22 C -0.123 4.123 23 C -0.163 4.163 24 C 0.053 3.947 25 H 0.065 0.935 26 H 0.058 0.942 27 H 0.057 0.943 28 H 0.075 0.925 29 H 0.030 0.970 30 H 0.079 0.921 31 H 0.029 0.971 32 H 0.072 0.928 33 H 0.065 0.935 34 H 0.054 0.946 35 H 0.071 0.929 36 H 0.381 0.619 37 H 0.085 0.915 38 H 0.090 0.910 39 H 0.276 0.724 40 H 0.117 0.883 41 H 0.090 0.910 42 H 0.077 0.923 43 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.818 -9.805 7.154 16.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.076 4.076 3 N -0.261 5.261 4 C -0.078 4.078 5 C -0.155 4.155 6 C -0.175 4.175 7 C 0.061 3.939 8 H 0.100 0.900 9 N -0.391 5.391 10 C -0.001 4.001 11 C -0.182 4.182 12 C -0.207 4.207 13 C 0.071 3.929 14 C -0.499 4.499 15 H 0.090 0.910 16 C -0.140 4.140 17 N -0.436 5.436 18 Si 0.728 3.272 19 H -0.196 1.196 20 H -0.189 1.189 21 H -0.206 1.206 22 C -0.143 4.143 23 C -0.185 4.185 24 C -0.075 4.075 25 H 0.084 0.916 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.094 0.906 29 H 0.048 0.952 30 H 0.098 0.902 31 H 0.047 0.953 32 H 0.090 0.910 33 H 0.083 0.917 34 H 0.073 0.927 35 H 0.090 0.910 36 H 0.213 0.787 37 H 0.103 0.897 38 H 0.109 0.891 39 H 0.086 0.914 40 H 0.135 0.865 41 H 0.108 0.892 42 H 0.095 0.905 43 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -12.169 -9.507 6.371 16.705 hybrid contribution 0.670 0.085 0.697 0.970 sum -11.499 -9.422 7.068 16.461 Atomic orbital electron populations 1.21944 0.95082 1.01744 1.02573 1.22069 0.95651 0.89182 1.00717 1.61902 1.03694 1.10356 1.50105 1.22243 0.98711 0.93916 0.92921 1.21578 0.96325 0.95084 1.02489 1.22128 0.94228 1.01716 0.99468 1.20507 0.81512 0.92738 0.99150 0.90024 1.43855 1.04938 1.31368 1.58911 1.17319 0.90200 0.92099 1.00499 1.19795 0.92032 1.00904 1.05472 1.20538 0.97358 0.96930 1.05922 1.17494 0.91870 0.91790 0.91704 1.19371 1.06999 1.15914 1.07612 0.91001 1.25784 0.94415 0.98200 0.95648 1.69860 1.26277 1.36279 1.11141 0.86402 0.80262 0.82725 0.77828 1.19643 1.18868 1.20583 1.20938 0.93767 0.98445 1.01173 1.20139 0.97901 0.97649 1.02762 1.22289 0.87722 0.97991 0.99530 0.91625 0.92311 0.92373 0.90636 0.95181 0.90227 0.95300 0.90975 0.91677 0.92720 0.91020 0.78660 0.89714 0.89137 0.91374 0.86480 0.89175 0.90480 0.95059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.24 9.16 37.16 0.34 -0.90 16 2 C 0.05 0.50 5.99 -3.82 -0.02 0.48 16 3 N -0.54 -6.34 4.81 -234.67 -1.13 -7.47 16 4 C 0.05 0.54 4.85 -3.84 -0.02 0.52 16 5 C -0.12 -1.38 6.09 -26.65 -0.16 -1.54 16 6 C -0.14 -1.94 5.51 -26.61 -0.15 -2.09 16 7 C 0.17 2.59 2.30 -67.85 -0.16 2.44 16 8 H 0.08 1.45 6.45 -51.93 -0.33 1.12 16 9 N -0.76 -13.24 5.22 -51.96 -0.27 -13.51 16 10 C 0.10 2.09 6.65 -83.69 -0.56 1.54 16 11 C -0.16 -3.63 9.82 -39.77 -0.39 -4.02 16 12 C -0.19 -4.70 9.74 -39.27 -0.38 -5.08 16 13 C 0.07 2.03 5.57 -106.79 -0.59 1.44 16 14 C -0.47 -12.87 9.03 -37.88 -0.34 -13.21 16 15 H 0.07 1.92 7.90 -52.48 -0.41 1.50 16 16 C 0.07 1.95 5.14 -17.34 -0.09 1.86 16 17 N -0.81 -21.74 10.98 55.54 0.61 -21.13 16 18 Si 0.90 19.49 29.59 -169.99 -5.03 14.46 16 19 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 20 H -0.26 -5.65 7.11 56.52 0.40 -5.25 16 21 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 22 C -0.12 -3.27 8.63 -39.26 -0.34 -3.61 16 23 C -0.16 -3.84 8.78 -39.77 -0.35 -4.19 16 24 C 0.05 0.69 4.90 -3.83 -0.02 0.67 16 25 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.06 0.44 6.21 -51.93 -0.32 0.12 16 28 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.03 0.28 8.08 -51.93 -0.42 -0.14 16 30 H 0.08 0.75 5.81 -51.92 -0.30 0.45 16 31 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.07 1.17 7.68 -51.93 -0.40 0.77 16 36 H 0.38 5.98 8.60 -40.82 -0.35 5.63 16 37 H 0.08 1.69 8.06 -52.48 -0.42 1.27 16 38 H 0.09 2.15 8.06 -52.48 -0.42 1.73 16 39 H 0.28 6.79 8.30 -40.82 -0.34 6.45 16 40 H 0.12 3.22 6.20 -52.49 -0.33 2.90 16 41 H 0.09 1.97 6.03 -52.49 -0.32 1.66 16 42 H 0.08 1.02 8.12 -51.93 -0.42 0.59 16 43 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16 LS Contribution 334.69 15.07 5.04 5.04 Total: -1.00 -28.11 334.69 -10.97 -39.08 By element: Atomic # 1 Polarization: 16.19 SS G_CDS: -6.97 Total: 9.23 kcal Atomic # 6 Polarization: -22.48 SS G_CDS: -3.23 Total: -25.70 kcal Atomic # 7 Polarization: -41.32 SS G_CDS: -0.79 Total: -42.11 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -5.03 Total: 14.46 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -28.11 -10.97 -39.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001308674620.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.481 kcal (2) G-P(sol) polarization free energy of solvation -28.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.083 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds