Wall clock time and date at job start Mon Mar 30 2020 01:14:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46904 * 109.46867 * 2 1 4 4 C 1.46837 * 111.00325 * 45.79303 * 3 2 1 5 5 C 1.53039 * 109.52491 * 185.83923 * 4 3 2 6 6 C 1.53115 * 109.27589 * 300.81696 * 5 4 3 7 7 C 1.53121 * 109.16012 * 57.65904 * 6 5 4 8 8 H 1.08997 * 109.53771 * 62.30129 * 7 6 5 9 9 N 1.46498 * 109.49923 * 182.40106 * 7 6 5 10 10 C 1.38856 * 120.00300 * 274.79788 * 9 7 6 11 11 C 1.39562 * 119.84620 * 180.02562 * 10 9 7 12 12 C 1.36335 * 120.16452 * 180.02562 * 11 10 9 13 13 C 1.40885 * 119.83839 * 359.97438 * 12 11 10 14 14 C 1.41135 * 120.16257 * 180.02562 * 13 12 11 15 15 H 1.08005 * 119.99493 * 334.94092 * 14 13 12 16 16 C 1.39854 * 120.00228 * 154.94202 * 14 13 12 17 17 N 1.30906 * 120.00278 * 342.57943 * 16 14 13 18 18 Si 1.86803 * 120.00122 * 162.58036 * 16 14 13 19 19 H 1.48505 * 109.46892 * 265.59742 * 18 16 14 20 20 H 1.48497 * 109.47139 * 25.59334 * 18 16 14 21 21 H 1.48496 * 109.47486 * 145.59440 * 18 16 14 22 22 C 1.40889 * 119.68526 * 0.27792 * 13 12 11 23 23 C 1.36346 * 119.83670 * 359.44180 * 22 13 12 24 24 C 1.46853 * 110.99782 * 170.00568 * 3 2 1 25 25 H 1.08995 * 109.47272 * 60.00036 * 1 2 3 26 26 H 1.08999 * 109.46982 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47295 * 300.00072 * 1 2 3 28 28 H 1.08999 * 109.47295 * 239.99928 * 2 1 3 29 29 H 1.08995 * 109.47272 * 119.99964 * 2 1 3 30 30 H 1.09008 * 109.46185 * 305.85325 * 4 3 2 31 31 H 1.08998 * 109.46354 * 65.81842 * 4 3 2 32 32 H 1.09003 * 109.50143 * 60.76189 * 5 4 3 33 33 H 1.09005 * 109.50048 * 180.83464 * 5 4 3 34 34 H 1.08993 * 109.52515 * 297.74925 * 6 5 4 35 35 H 1.09007 * 109.52070 * 177.55633 * 6 5 4 36 36 H 0.97003 * 119.99552 * 94.80637 * 9 7 6 37 37 H 1.08004 * 119.92002 * 0.04090 * 11 10 9 38 38 H 1.08006 * 120.08389 * 180.02562 * 12 11 10 39 39 H 0.97004 * 120.00220 * 180.02562 * 17 16 14 40 40 H 1.08001 * 120.08104 * 179.70412 * 22 13 12 41 41 H 1.08001 * 119.92105 * 180.28059 * 23 22 13 42 42 H 1.08996 * 109.46600 * 54.14138 * 24 3 2 43 43 H 1.09000 * 109.44788 * 294.16691 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.2938 2.1998 0.9826 5 6 1.7264 3.6621 0.8539 6 6 3.2354 3.7657 1.0921 7 6 3.9654 2.8705 0.0870 8 1 3.7650 3.2205 -0.9256 9 7 5.4067 2.9196 0.3452 10 6 6.1770 3.9341 -0.2075 11 6 7.5497 3.9773 0.0402 12 6 8.3121 4.9708 -0.4987 13 6 7.7110 5.9551 -1.3079 14 6 8.4939 6.9863 -1.8697 15 1 9.4198 7.2798 -1.3974 16 6 8.0707 7.6282 -3.0380 17 7 7.1584 7.0738 -3.7957 18 14 8.8072 9.2767 -3.5172 19 1 7.9418 10.3717 -3.0098 20 1 10.1635 9.4034 -2.9262 21 1 8.9016 9.3654 -4.9965 22 6 6.3238 5.9082 -1.5493 23 6 5.5747 4.9055 -1.0084 24 6 3.4680 1.4312 0.2379 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 0.2222 2.1206 0.7995 31 1 1.5178 1.8419 1.9875 32 1 1.4901 4.0248 -0.1465 33 1 1.1984 4.2642 1.5935 34 1 3.4673 3.4397 2.1060 35 1 3.5551 4.7993 0.9587 36 1 5.8228 2.2432 0.9022 37 1 8.0094 3.2218 0.6602 38 1 9.3745 5.0028 -0.3065 39 1 6.8652 7.5189 -4.6062 40 1 5.8556 6.6621 -2.1647 41 1 4.5119 4.8656 -1.1963 42 1 3.9755 0.7937 -0.4860 43 1 3.6815 1.0769 1.2464 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001308674620.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:36 Heat of formation + Delta-G solvation = 5.338630 kcal Electronic energy + Delta-G solvation = -20974.318953 eV Core-core repulsion = 18017.795347 eV Total energy + Delta-G solvation = -2956.523606 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.59661 -39.38586 -36.84778 -35.19902 -33.90757 -31.76256 -31.35437 -30.63846 -29.15154 -26.34522 -25.31942 -24.13583 -22.94691 -22.45304 -21.32008 -20.65383 -19.14253 -17.88945 -17.34133 -16.78972 -16.33479 -15.99502 -15.70035 -15.44913 -15.08208 -14.90727 -14.47088 -14.41411 -14.15605 -13.78564 -13.67355 -13.39046 -13.26673 -12.88235 -12.75430 -12.59897 -12.53627 -12.37344 -12.29045 -12.03704 -11.74125 -11.57792 -11.50839 -11.32928 -11.10902 -11.01162 -10.27939 -9.39092 -9.26630 -8.53564 -8.15114 -6.00325 1.11518 1.19634 1.40304 1.53383 1.59345 2.28013 2.58432 2.85708 3.23540 3.79728 3.85127 3.93935 4.04686 4.13150 4.26780 4.31450 4.42038 4.48252 4.52159 4.55991 4.60983 4.66679 4.73338 4.85946 4.98197 5.03918 5.04331 5.10097 5.12913 5.17453 5.26129 5.29652 5.34678 5.42803 5.46873 5.69581 5.82251 5.97597 6.09679 6.16906 6.20326 6.40368 6.68128 6.88244 7.09560 7.15842 7.33119 8.49838 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.032071 B = 0.003558 C = 0.003409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.849428 B = 7868.336370 C = 8212.004726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.050 3.950 3 N -0.550 5.550 4 C 0.052 3.948 5 C -0.113 4.113 6 C -0.130 4.130 7 C 0.166 3.834 8 H 0.055 0.945 9 N -0.746 5.746 10 C 0.117 3.883 11 C -0.165 4.165 12 C -0.196 4.196 13 C 0.036 3.964 14 C -0.506 4.506 15 H 0.067 0.933 16 C 0.031 3.969 17 N -0.843 5.843 18 Si 0.977 3.023 19 H -0.265 1.265 20 H -0.261 1.261 21 H -0.271 1.271 22 C -0.143 4.143 23 C -0.172 4.172 24 C 0.064 3.936 25 H 0.058 0.942 26 H 0.073 0.927 27 H 0.064 0.936 28 H 0.073 0.927 29 H 0.037 0.963 30 H 0.097 0.903 31 H 0.037 0.963 32 H 0.060 0.940 33 H 0.083 0.917 34 H 0.062 0.938 35 H 0.044 0.956 36 H 0.395 0.605 37 H 0.118 0.882 38 H 0.097 0.903 39 H 0.282 0.718 40 H 0.097 0.903 41 H 0.101 0.899 42 H 0.074 0.926 43 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.912 -11.142 8.402 19.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.077 4.077 3 N -0.276 5.276 4 C -0.075 4.075 5 C -0.151 4.151 6 C -0.170 4.170 7 C 0.060 3.940 8 H 0.073 0.927 9 N -0.380 5.380 10 C 0.017 3.983 11 C -0.187 4.187 12 C -0.216 4.216 13 C 0.033 3.967 14 C -0.537 4.537 15 H 0.086 0.914 16 C -0.181 4.181 17 N -0.471 5.471 18 Si 0.799 3.201 19 H -0.190 1.190 20 H -0.184 1.184 21 H -0.195 1.195 22 C -0.163 4.163 23 C -0.194 4.194 24 C -0.065 4.065 25 H 0.077 0.923 26 H 0.092 0.908 27 H 0.082 0.918 28 H 0.092 0.908 29 H 0.055 0.945 30 H 0.115 0.885 31 H 0.055 0.945 32 H 0.079 0.921 33 H 0.101 0.899 34 H 0.081 0.919 35 H 0.063 0.937 36 H 0.230 0.770 37 H 0.136 0.864 38 H 0.115 0.885 39 H 0.092 0.908 40 H 0.115 0.885 41 H 0.119 0.881 42 H 0.092 0.908 43 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -13.290 -10.891 7.646 18.807 hybrid contribution 0.914 0.331 0.395 1.049 sum -12.376 -10.560 8.041 18.148 Atomic orbital electron populations 1.21914 0.93674 1.02796 1.02510 1.22138 0.96804 0.87820 1.00961 1.61887 1.02969 1.11942 1.50804 1.22262 0.99539 0.92625 0.93056 1.21562 0.94541 0.96575 1.02417 1.22030 0.95922 0.99668 0.99348 1.20594 0.80286 0.95028 0.98098 0.92668 1.43870 1.05761 1.30231 1.58090 1.17395 0.90462 0.91870 0.98526 1.20094 0.92239 1.00951 1.05450 1.20758 0.98070 0.97114 1.05642 1.17812 0.92430 0.93116 0.93374 1.19594 1.07584 1.17650 1.08887 0.91439 1.26616 0.94809 1.01571 0.95085 1.69929 1.27635 1.37835 1.11698 0.85276 0.79407 0.77659 0.77783 1.19004 1.18440 1.19548 1.20851 0.93990 0.99264 1.02177 1.20239 0.98369 0.97643 1.03114 1.22097 0.88711 0.95587 1.00124 0.92298 0.90784 0.91752 0.90837 0.94478 0.88484 0.94501 0.92137 0.89851 0.91889 0.93684 0.77027 0.86379 0.88489 0.90820 0.88543 0.88120 0.90799 0.93818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 9.16 71.98 0.66 -1.32 16 2 C 0.05 0.84 5.99 86.30 0.52 1.36 16 3 N -0.55 -11.77 4.81 -896.37 -4.31 -16.08 16 4 C 0.05 0.98 4.85 86.33 0.42 1.40 16 5 C -0.11 -2.46 6.09 30.65 0.19 -2.28 16 6 C -0.13 -3.55 5.51 30.67 0.17 -3.38 16 7 C 0.17 4.93 2.30 45.04 0.10 5.03 16 8 H 0.06 1.96 6.45 -2.39 -0.02 1.94 16 9 N -0.75 -24.83 5.22 -318.30 -1.66 -26.50 16 10 C 0.12 5.04 6.65 38.67 0.26 5.29 16 11 C -0.17 -7.32 9.82 22.15 0.22 -7.11 16 12 C -0.20 -9.95 9.74 22.47 0.22 -9.73 16 13 C 0.04 2.02 5.57 -21.27 -0.12 1.90 16 14 C -0.51 -28.94 9.03 23.37 0.21 -28.73 16 15 H 0.07 3.75 7.90 -2.91 -0.02 3.72 16 16 C 0.03 1.66 5.14 85.22 0.44 2.10 16 17 N -0.84 -47.01 10.98 21.81 0.24 -46.77 16 18 Si 0.98 40.88 29.59 68.60 2.03 42.91 16 19 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 20 H -0.26 -10.60 7.11 99.48 0.71 -9.90 16 21 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 22 C -0.14 -7.90 8.63 22.48 0.19 -7.70 16 23 C -0.17 -8.28 8.78 22.15 0.19 -8.09 16 24 C 0.06 1.50 4.90 86.32 0.42 1.92 16 25 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 26 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.06 0.76 6.21 -2.39 -0.01 0.75 16 28 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.04 0.58 8.08 -2.39 -0.02 0.56 16 30 H 0.10 1.51 5.81 -2.38 -0.01 1.50 16 31 H 0.04 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.08 1.53 8.14 -2.38 -0.02 1.51 16 34 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.04 1.46 7.68 -2.38 -0.02 1.44 16 36 H 0.40 11.28 8.60 -92.71 -0.80 10.48 16 37 H 0.12 4.40 8.06 -2.91 -0.02 4.38 16 38 H 0.10 4.67 8.06 -2.91 -0.02 4.64 16 39 H 0.28 14.30 8.30 -92.71 -0.77 13.53 16 40 H 0.10 5.64 6.20 -2.91 -0.02 5.62 16 41 H 0.10 4.54 6.03 -2.91 -0.02 4.52 16 42 H 0.07 1.80 8.12 -2.39 -0.02 1.78 16 43 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 Total: -1.00 -62.56 334.69 0.58 -61.98 By element: Atomic # 1 Polarization: 33.59 SS G_CDS: 0.19 Total: 33.79 kcal Atomic # 6 Polarization: -53.43 SS G_CDS: 4.09 Total: -49.34 kcal Atomic # 7 Polarization: -83.61 SS G_CDS: -5.73 Total: -89.34 kcal Atomic # 14 Polarization: 40.88 SS G_CDS: 2.03 Total: 42.91 kcal Total: -62.56 0.58 -61.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001308674620.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.320 kcal (2) G-P(sol) polarization free energy of solvation -62.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.982 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds