Wall clock time and date at job start Mon Mar 30 2020 01:34:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50696 * 120.00522 * 2 1 4 4 C 1.53006 * 109.47512 * 125.00325 * 3 2 1 5 5 C 1.52997 * 109.47337 * 180.02562 * 4 3 2 6 6 C 1.52993 * 109.47097 * 180.02562 * 5 4 3 7 7 C 1.53007 * 109.47088 * 180.02562 * 6 5 4 8 8 N 1.46505 * 109.46790 * 180.02562 * 7 6 5 9 9 C 1.46503 * 119.99603 * 269.99357 * 8 7 6 10 10 C 1.38816 * 120.00451 * 89.99720 * 8 7 6 11 11 C 1.39799 * 119.58403 * 357.25081 * 10 8 7 12 12 C 1.38592 * 119.49060 * 179.78799 * 11 10 8 13 13 C 1.38390 * 118.68408 * 0.47723 * 12 11 10 14 14 C 1.40553 * 119.14238 * 359.74524 * 13 12 11 15 15 C 1.41323 * 119.78342 * 180.02562 * 14 13 12 16 16 H 1.08008 * 119.99525 * 5.92696 * 15 14 13 17 17 C 1.40020 * 120.00254 * 185.93246 * 15 14 13 18 18 N 1.30743 * 120.00002 * 354.26030 * 17 15 14 19 19 Si 1.86802 * 120.00023 * 174.25795 * 17 15 14 20 20 H 1.48499 * 109.46542 * 94.99008 * 19 17 15 21 21 H 1.48495 * 109.47393 * 214.98794 * 19 17 15 22 22 H 1.48498 * 109.47320 * 334.99518 * 19 17 15 23 23 N 1.31958 * 119.58686 * 177.51776 * 10 8 7 24 24 H 1.08004 * 119.99644 * 359.97438 * 1 2 3 25 25 H 1.07994 * 120.00247 * 180.02562 * 1 2 3 26 26 H 1.08004 * 119.99644 * 180.02562 * 2 1 3 27 27 H 1.09002 * 109.47188 * 5.00470 * 3 2 1 28 28 H 1.08998 * 109.47320 * 245.00406 * 3 2 1 29 29 H 1.09002 * 109.46776 * 59.99892 * 4 3 2 30 30 H 1.08998 * 109.46895 * 300.00342 * 4 3 2 31 31 H 1.09003 * 109.46964 * 59.99545 * 5 4 3 32 32 H 1.09003 * 109.47031 * 300.00333 * 5 4 3 33 33 H 1.09003 * 109.47603 * 59.99914 * 6 5 4 34 34 H 1.08998 * 109.46996 * 299.99924 * 6 5 4 35 35 H 1.09003 * 109.46499 * 299.99519 * 7 6 5 36 36 H 1.08999 * 109.47069 * 60.00014 * 7 6 5 37 37 H 1.09005 * 109.47030 * 95.58477 * 9 8 7 38 38 H 1.08997 * 109.47127 * 215.58426 * 9 8 7 39 39 H 1.09002 * 109.46962 * 335.58970 * 9 8 7 40 40 H 1.08006 * 120.25377 * 0.02562 * 11 10 8 41 41 H 1.07998 * 120.65907 * 180.22590 * 12 11 10 42 42 H 1.07996 * 120.42516 * 179.77223 * 13 12 11 43 43 H 0.97003 * 120.00042 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 3.0352 1.3329 1.1816 5 6 3.7999 2.6581 1.1819 6 6 4.7719 2.6858 2.3631 7 6 5.5361 4.0113 2.3638 8 7 6.4673 4.0375 3.4945 9 6 6.0331 4.5690 4.7888 10 6 7.7610 3.5587 3.3395 11 6 8.1487 3.0005 2.1178 12 6 9.4421 2.5271 1.9638 13 6 10.3131 2.6134 3.0358 14 6 9.8623 3.1809 4.2400 15 6 10.7404 3.2763 5.3432 16 1 11.7794 3.0029 5.2315 17 6 10.2637 3.7250 6.5809 18 7 9.0361 4.1617 6.6893 19 14 11.3815 3.6996 8.0773 20 1 12.0205 5.0301 8.2403 21 1 10.5814 3.3831 9.2876 22 1 12.4313 2.6655 7.8935 23 7 8.6079 3.6312 4.3489 24 1 -0.5400 0.9354 0.0004 25 1 -0.5400 -0.9352 0.0004 26 1 1.8499 -0.9354 -0.0004 27 1 1.3587 2.1316 0.0897 28 1 2.6213 1.4025 -0.9314 29 1 3.7401 0.5063 1.0919 30 1 2.4775 1.2354 2.1130 31 1 3.0947 3.4845 1.2717 32 1 4.3575 2.7561 0.2505 33 1 5.4770 1.8595 2.2728 34 1 4.2145 2.5877 3.2946 35 1 6.0934 4.1098 1.4322 36 1 4.8307 4.8373 2.4543 37 1 5.7038 3.7486 5.4265 38 1 6.8642 5.0887 5.2654 39 1 5.2081 5.2651 4.6374 40 1 7.4467 2.9422 1.2990 41 1 9.7628 2.0956 1.0271 42 1 11.3262 2.2498 2.9480 43 1 8.7060 4.4729 7.5466 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321328271.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:26 Heat of formation + Delta-G solvation = 40.053820 kcal Electronic energy + Delta-G solvation = -20448.937954 eV Core-core repulsion = 17493.919711 eV Total energy + Delta-G solvation = -2955.018243 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -38.48050 -36.90297 -35.72007 -33.64539 -33.17255 -30.63930 -29.80786 -29.02240 -26.73367 -25.40677 -24.06568 -22.19485 -21.11347 -20.96077 -19.90045 -19.56341 -17.37694 -16.23129 -15.78709 -15.08263 -14.80216 -14.70595 -14.27157 -14.03927 -13.81584 -13.45864 -13.09735 -12.89344 -12.59704 -12.22603 -12.01107 -11.79868 -11.63143 -11.41580 -11.19152 -11.11414 -11.00969 -10.89064 -10.83070 -10.66713 -10.55820 -10.36621 -10.23616 -9.87729 -9.52285 -9.34981 -8.62121 -7.85264 -7.43488 -6.33954 -6.30583 -4.43150 2.07414 2.89870 3.12942 3.16315 3.27566 3.32640 4.00682 4.04610 4.61210 4.83850 4.86651 5.02796 5.06216 5.26502 5.29785 5.56278 5.60541 5.63565 5.72251 5.89563 5.95001 5.97433 6.01593 6.02974 6.09397 6.22563 6.26259 6.40929 6.42338 6.52778 6.57438 6.58948 6.70614 6.81835 6.89077 6.94316 7.15744 7.26106 7.64486 7.87703 7.99786 8.07311 8.42398 8.59636 8.84721 9.15532 10.27889 10.43668 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.027669 B = 0.003269 C = 0.003129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.713158 B = 8562.642136 C = 8944.974110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.149 4.149 3 C -0.096 4.096 4 C -0.114 4.114 5 C -0.116 4.116 6 C -0.138 4.138 7 C 0.138 3.862 8 N -0.623 5.623 9 C 0.115 3.885 10 C 0.412 3.588 11 C -0.365 4.365 12 C -0.033 4.033 13 C -0.318 4.318 14 C 0.291 3.709 15 C -0.435 4.435 16 H 0.082 0.918 17 C 0.073 3.927 18 N -0.716 5.716 19 Si 0.904 3.096 20 H -0.271 1.271 21 H -0.277 1.277 22 H -0.262 1.262 23 N -0.528 5.528 24 H 0.095 0.905 25 H 0.094 0.906 26 H 0.107 0.893 27 H 0.065 0.935 28 H 0.072 0.928 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.061 0.939 33 H 0.067 0.933 34 H 0.058 0.942 35 H 0.070 0.930 36 H 0.060 0.940 37 H 0.029 0.971 38 H 0.088 0.912 39 H 0.037 0.963 40 H 0.092 0.908 41 H 0.092 0.908 42 H 0.094 0.906 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.457 -2.316 -7.379 14.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.167 4.167 3 C -0.133 4.133 4 C -0.152 4.152 5 C -0.154 4.154 6 C -0.178 4.178 7 C 0.013 3.987 8 N -0.340 5.340 9 C -0.029 4.029 10 C 0.173 3.827 11 C -0.391 4.391 12 C -0.057 4.057 13 C -0.341 4.341 14 C 0.164 3.836 15 C -0.467 4.467 16 H 0.100 0.900 17 C -0.152 4.152 18 N -0.338 5.338 19 Si 0.728 3.272 20 H -0.197 1.197 21 H -0.202 1.202 22 H -0.186 1.186 23 N -0.249 5.249 24 H 0.113 0.887 25 H 0.113 0.887 26 H 0.125 0.875 27 H 0.083 0.917 28 H 0.090 0.910 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.077 0.923 35 H 0.088 0.912 36 H 0.078 0.922 37 H 0.048 0.952 38 H 0.106 0.894 39 H 0.055 0.945 40 H 0.110 0.890 41 H 0.110 0.890 42 H 0.112 0.888 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -12.971 -1.807 -6.409 14.581 hybrid contribution 0.637 -0.547 -0.128 0.849 sum -12.335 -2.354 -6.537 14.157 Atomic orbital electron populations 1.23826 0.96009 1.01653 1.02453 1.23049 0.96049 0.98832 0.98772 1.20817 0.98263 0.95003 0.99256 1.21539 0.97652 0.98252 0.97761 1.21536 0.97908 0.97015 0.98921 1.22082 0.98133 0.99794 0.97769 1.21212 0.91308 0.95922 0.90230 1.45986 1.09167 1.68400 1.10484 1.21315 0.99563 0.96979 0.85017 1.18502 0.85173 0.89025 0.89998 1.20642 0.98372 1.21527 0.98519 1.20590 0.93168 0.95515 0.96428 1.21527 0.99865 1.16231 0.96458 1.18224 0.88112 0.86466 0.90764 1.19553 0.96317 1.37753 0.93089 0.90007 1.26020 0.95218 0.93676 1.00299 1.70137 1.14454 1.24615 1.24567 0.86385 0.80816 0.79379 0.80612 1.19654 1.20238 1.18617 1.68234 1.03378 1.26117 1.27137 0.88714 0.88744 0.87483 0.91656 0.90997 0.91797 0.92044 0.92261 0.91975 0.91404 0.92296 0.91192 0.92190 0.95212 0.89389 0.94457 0.88987 0.89026 0.88820 0.92049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.66 14.32 29.02 0.42 -1.24 16 2 C -0.15 -1.32 9.52 -36.03 -0.34 -1.67 16 3 C -0.10 -0.87 5.66 -27.88 -0.16 -1.02 16 4 C -0.11 -1.18 5.20 -26.73 -0.14 -1.32 16 5 C -0.12 -1.28 5.21 -26.74 -0.14 -1.42 16 6 C -0.14 -1.99 5.54 -26.73 -0.15 -2.14 16 7 C 0.14 2.23 5.11 -4.04 -0.02 2.21 16 8 N -0.62 -12.99 2.98 -181.68 -0.54 -13.53 16 9 C 0.11 2.28 10.45 59.85 0.63 2.90 16 10 C 0.41 10.22 7.38 -155.33 -1.15 9.08 16 11 C -0.36 -8.51 9.22 -38.87 -0.36 -8.87 16 12 C -0.03 -0.77 10.15 -39.39 -0.40 -1.17 16 13 C -0.32 -8.16 9.83 -38.65 -0.38 -8.54 16 14 C 0.29 8.20 6.54 -85.00 -0.56 7.64 16 15 C -0.43 -11.87 9.13 -37.74 -0.34 -12.21 16 16 H 0.08 2.10 7.85 -52.48 -0.41 1.69 16 17 C 0.07 1.86 5.49 -17.35 -0.10 1.77 16 18 N -0.72 -18.83 11.48 55.55 0.64 -18.19 16 19 Si 0.90 18.82 29.56 -169.99 -5.03 13.80 16 20 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 21 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 22 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 23 N -0.53 -14.65 6.69 -10.33 -0.07 -14.72 16 24 H 0.09 0.72 7.84 -52.48 -0.41 0.31 16 25 H 0.09 0.67 8.06 -52.49 -0.42 0.25 16 26 H 0.11 0.90 8.06 -52.48 -0.42 0.48 16 27 H 0.06 0.56 7.79 -51.93 -0.40 0.15 16 28 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 34 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.07 1.14 6.26 -51.93 -0.33 0.82 16 36 H 0.06 0.84 7.86 -51.93 -0.41 0.43 16 37 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.09 2.01 7.51 -51.93 -0.39 1.62 16 39 H 0.04 0.60 7.83 -51.93 -0.41 0.20 16 40 H 0.09 1.91 6.18 -52.48 -0.32 1.58 16 41 H 0.09 1.85 8.06 -52.49 -0.42 1.43 16 42 H 0.09 2.24 8.06 -52.49 -0.42 1.82 16 43 H 0.27 6.41 8.29 -40.82 -0.34 6.07 16 LS Contribution 355.57 15.07 5.36 5.36 Total: -1.00 -29.32 355.57 -10.12 -39.44 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: -7.29 Total: 3.86 kcal Atomic # 6 Polarization: -12.82 SS G_CDS: -3.19 Total: -16.01 kcal Atomic # 7 Polarization: -46.47 SS G_CDS: 0.03 Total: -46.45 kcal Atomic # 14 Polarization: 18.82 SS G_CDS: -5.03 Total: 13.80 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -29.32 -10.12 -39.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321328271.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.494 kcal (2) G-P(sol) polarization free energy of solvation -29.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.440 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds