Wall clock time and date at job start Mon Mar 30 2020 01:23:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.39672 * 119.99879 * 2 1 4 4 C 1.38925 * 120.07409 * 354.03223 * 3 2 1 5 5 C 1.38086 * 119.92458 * 180.02562 * 4 3 2 6 6 C 1.38310 * 120.07344 * 359.72273 * 5 4 3 7 7 C 1.38263 * 120.14996 * 0.55041 * 6 5 4 8 8 C 1.38122 * 120.07269 * 359.44908 * 7 6 5 9 9 C 1.50704 * 120.03756 * 180.29569 * 8 7 6 10 10 N 1.46500 * 109.47235 * 263.70942 * 9 8 7 11 11 C 1.36943 * 119.99780 * 73.93288 * 10 9 8 12 12 H 1.07993 * 119.99981 * 192.23041 * 11 10 9 13 13 C 1.38814 * 119.99984 * 12.22312 * 11 10 9 14 14 N 1.31617 * 120.00024 * 32.70301 * 13 11 10 15 15 Si 1.86806 * 119.99935 * 212.70716 * 13 11 10 16 16 H 1.48497 * 109.47166 * 59.99928 * 15 13 11 17 17 H 1.48495 * 109.46784 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.46779 * 299.99951 * 15 13 11 19 19 C 1.46498 * 120.00293 * 253.93190 * 10 9 8 20 20 C 1.54262 * 110.03192 * 240.26210 * 19 10 9 21 21 C 1.54960 * 104.16205 * 217.13659 * 20 19 10 22 22 C 1.54890 * 102.77911 * 37.88497 * 21 20 19 23 23 C 1.53871 * 110.03263 * 123.04390 * 19 10 9 24 24 H 1.09010 * 109.47172 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47406 * 299.99818 * 1 2 3 26 26 H 1.09004 * 109.47330 * 60.00089 * 1 2 3 27 27 H 0.97000 * 120.00010 * 180.02562 * 2 1 3 28 28 H 1.08002 * 120.04024 * 359.97438 * 4 3 2 29 29 H 1.08003 * 119.96241 * 179.97438 * 5 4 3 30 30 H 1.08006 * 119.92371 * 180.29818 * 6 5 4 31 31 H 1.07998 * 119.96397 * 179.72242 * 7 6 5 32 32 H 1.09000 * 109.47025 * 23.71214 * 9 8 7 33 33 H 1.08996 * 109.46782 * 143.71101 * 9 8 7 34 34 H 0.96992 * 119.99873 * 179.97438 * 14 13 11 35 35 H 1.08999 * 110.01566 * 1.65351 * 19 10 9 36 36 H 1.09007 * 110.48503 * 335.78226 * 20 19 10 37 37 H 1.09001 * 110.48841 * 98.42125 * 20 19 10 38 38 H 1.09008 * 110.71827 * 279.57583 * 21 20 19 39 39 H 1.08997 * 110.92730 * 156.29792 * 21 20 19 40 40 H 1.08997 * 110.48895 * 203.40932 * 22 21 20 41 41 H 1.09003 * 110.59724 * 80.81526 * 22 21 20 42 42 H 1.09004 * 110.03083 * 238.56914 * 23 19 10 43 43 H 1.08995 * 110.03412 * 359.94843 * 23 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1633 1.2096 0.0000 4 6 1.4758 2.4104 -0.1250 5 6 2.1694 3.6044 -0.1252 6 6 3.5464 3.6061 0.0047 7 6 4.2342 2.4126 0.1236 8 6 3.5466 1.2147 0.1246 9 6 4.2965 -0.0854 0.2609 10 7 4.5325 -0.6548 -1.0681 11 6 5.4768 -0.1024 -1.8918 12 1 5.5181 -0.3866 -2.9328 13 6 6.3808 0.8232 -1.3886 14 7 6.7955 0.7281 -0.1431 15 14 7.0088 2.2037 -2.4793 16 1 5.8646 3.0321 -2.9373 17 1 7.9567 3.0495 -1.7106 18 1 7.7046 1.6262 -3.6573 19 6 3.7584 -1.8151 -1.5159 20 6 4.7038 -2.9956 -1.8198 21 6 4.0700 -3.6800 -3.0573 22 6 3.5549 -2.4780 -3.8872 23 6 3.0279 -1.4862 -2.8296 24 1 -0.3634 -1.0278 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.9500 -0.8400 -0.0004 28 1 0.4002 2.4099 -0.2228 29 1 1.6356 4.5382 -0.2227 30 1 4.0860 4.5417 0.0091 31 1 5.3098 2.4173 0.2204 32 1 5.2519 0.0962 0.7534 33 1 3.7079 -0.7836 0.8560 34 1 7.4274 1.3745 0.2083 35 1 3.0380 -2.1013 -0.7497 36 1 5.7041 -2.6324 -2.0555 37 1 4.7363 -3.6853 -0.9763 38 1 3.2442 -4.3263 -2.7598 39 1 4.8174 -4.2432 -3.6161 40 1 2.7495 -2.7905 -4.5519 41 1 4.3678 -2.0299 -4.4586 42 1 1.9530 -1.6136 -2.7011 43 1 3.2485 -0.4629 -3.1335 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001474359899.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:24 Heat of formation + Delta-G solvation = 51.221072 kcal Electronic energy + Delta-G solvation = -22653.102516 eV Core-core repulsion = 19698.568522 eV Total energy + Delta-G solvation = -2954.533994 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -38.98474 -37.60884 -34.82682 -34.45239 -31.15952 -30.34824 -28.89450 -27.93443 -26.75937 -25.60988 -25.21423 -22.56219 -20.69089 -20.17241 -19.99054 -19.16013 -16.86931 -16.27541 -15.71327 -15.29051 -14.66798 -14.44274 -14.10603 -13.89065 -13.45850 -13.34327 -13.13882 -12.72772 -12.65834 -12.44876 -11.79510 -11.73806 -11.37657 -11.04671 -10.94566 -10.68405 -10.58453 -10.49772 -10.37030 -10.30506 -10.05806 -10.02043 -9.81322 -9.66998 -9.65445 -9.41507 -8.49698 -7.77448 -6.77352 -6.60811 -5.68810 -3.07270 2.36218 2.49195 3.43932 3.50626 3.59112 4.08898 4.53821 4.77273 5.22046 5.34573 5.35149 5.40211 5.48419 5.65780 5.69905 5.75551 5.79986 5.91450 5.99636 6.02101 6.16300 6.19970 6.32363 6.35399 6.40691 6.43742 6.52843 6.54304 6.62693 6.71006 6.75090 6.89635 6.98215 7.13222 7.18370 7.22399 7.36577 7.62773 7.71051 7.87936 7.95338 8.14563 8.35561 8.47204 9.21671 9.91869 10.34154 11.24946 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.012439 B = 0.010649 C = 0.006718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2250.445250 B = 2628.773549 C = 4166.882047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.755 5.755 3 C 0.210 3.790 4 C -0.212 4.212 5 C -0.097 4.097 6 C -0.190 4.190 7 C -0.054 4.054 8 C -0.126 4.126 9 C 0.164 3.836 10 N -0.575 5.575 11 C -0.233 4.233 12 H 0.072 0.928 13 C 0.005 3.995 14 N -0.885 5.885 15 Si 0.873 3.127 16 H -0.283 1.283 17 H -0.291 1.291 18 H -0.287 1.287 19 C 0.176 3.824 20 C -0.136 4.136 21 C -0.123 4.123 22 C -0.119 4.119 23 C -0.133 4.133 24 H 0.063 0.937 25 H 0.043 0.957 26 H 0.043 0.957 27 H 0.399 0.601 28 H 0.105 0.895 29 H 0.103 0.897 30 H 0.102 0.898 31 H 0.132 0.868 32 H 0.125 0.875 33 H 0.020 0.980 34 H 0.253 0.747 35 H 0.044 0.956 36 H 0.083 0.917 37 H 0.047 0.953 38 H 0.053 0.947 39 H 0.054 0.946 40 H 0.048 0.952 41 H 0.061 0.939 42 H 0.042 0.958 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.635 -2.816 -0.011 10.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.389 5.389 3 C 0.108 3.892 4 C -0.234 4.234 5 C -0.116 4.116 6 C -0.210 4.210 7 C -0.074 4.074 8 C -0.132 4.132 9 C 0.038 3.962 10 N -0.293 5.293 11 C -0.361 4.361 12 H 0.090 0.910 13 C -0.192 4.192 14 N -0.531 5.531 15 Si 0.703 3.297 16 H -0.210 1.210 17 H -0.217 1.217 18 H -0.214 1.214 19 C 0.068 3.932 20 C -0.175 4.175 21 C -0.161 4.161 22 C -0.157 4.157 23 C -0.172 4.172 24 H 0.081 0.919 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.236 0.764 28 H 0.123 0.877 29 H 0.122 0.878 30 H 0.120 0.880 31 H 0.150 0.850 32 H 0.141 0.859 33 H 0.039 0.961 34 H 0.064 0.936 35 H 0.062 0.938 36 H 0.101 0.899 37 H 0.066 0.934 38 H 0.072 0.928 39 H 0.073 0.927 40 H 0.067 0.933 41 H 0.080 0.920 42 H 0.061 0.939 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -9.705 -2.717 0.089 10.079 hybrid contribution 0.285 0.658 -0.798 1.072 sum -9.421 -2.059 -0.709 9.669 Atomic orbital electron populations 1.21357 0.81784 1.01151 1.00231 1.44517 1.04530 1.06044 1.83779 1.17748 0.91282 0.85531 0.94658 1.20375 0.98451 0.91756 1.12848 1.20601 0.94256 0.96395 1.00324 1.20877 0.94157 0.97795 1.08129 1.21226 1.00819 0.90944 0.94381 1.20392 0.90757 0.98348 1.03703 1.20385 1.01092 0.87766 0.86924 1.44228 1.39872 1.29873 1.15286 1.18925 1.07429 1.18426 0.91343 0.91048 1.24397 0.97811 1.01255 0.95780 1.69883 1.31759 1.35820 1.15601 0.86776 0.78102 0.84142 0.80634 1.20956 1.21726 1.21362 1.20967 0.91588 0.87269 0.93351 1.22899 1.01722 0.97098 0.95792 1.22441 0.99235 0.96953 0.97496 1.22271 0.99626 0.96269 0.97522 1.22604 0.97829 1.00252 0.96524 0.91860 0.93845 0.93816 0.76432 0.87708 0.87838 0.87986 0.85030 0.85855 0.96129 0.93616 0.93788 0.89863 0.93369 0.92785 0.92749 0.93345 0.92008 0.93872 0.90652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.28 9.99 59.84 0.60 1.88 16 2 N -0.75 -12.64 5.76 -65.39 -0.38 -13.01 16 3 C 0.21 4.13 6.63 -83.79 -0.56 3.57 16 4 C -0.21 -3.90 9.32 -39.38 -0.37 -4.27 16 5 C -0.10 -1.78 10.04 -39.61 -0.40 -2.18 16 6 C -0.19 -3.84 10.04 -39.55 -0.40 -4.24 16 7 C -0.05 -1.22 8.69 -39.61 -0.34 -1.57 16 8 C -0.13 -2.77 5.21 -104.42 -0.54 -3.31 16 9 C 0.16 3.71 4.88 -5.19 -0.03 3.69 16 10 N -0.57 -13.07 2.54 -165.76 -0.42 -13.49 16 11 C -0.23 -5.93 7.43 -15.06 -0.11 -6.04 16 12 H 0.07 1.86 7.60 -52.49 -0.40 1.46 16 13 C 0.00 0.13 3.29 -17.43 -0.06 0.07 16 14 N -0.88 -23.56 9.28 55.49 0.51 -23.05 16 15 Si 0.87 21.45 29.37 -169.99 -4.99 16.46 16 16 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 17 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 18 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 19 C 0.18 3.39 2.97 -66.82 -0.20 3.19 16 20 C -0.14 -2.49 6.42 -25.04 -0.16 -2.65 16 21 C -0.12 -1.90 6.91 -24.70 -0.17 -2.07 16 22 C -0.12 -1.93 6.83 -25.07 -0.17 -2.10 16 23 C -0.13 -2.41 6.08 -25.61 -0.16 -2.56 16 24 H 0.06 0.66 8.14 -51.92 -0.42 0.23 16 25 H 0.04 0.53 8.13 -51.93 -0.42 0.10 16 26 H 0.04 0.55 7.72 -51.93 -0.40 0.15 16 27 H 0.40 6.76 4.71 -40.82 -0.19 6.57 16 28 H 0.10 1.68 6.73 -52.49 -0.35 1.33 16 29 H 0.10 1.60 8.06 -52.48 -0.42 1.18 16 30 H 0.10 1.88 8.06 -52.48 -0.42 1.45 16 31 H 0.13 3.20 5.42 -52.49 -0.28 2.91 16 32 H 0.12 3.18 5.04 -51.93 -0.26 2.92 16 33 H 0.02 0.43 6.56 -51.93 -0.34 0.09 16 34 H 0.25 6.64 8.31 -40.82 -0.34 6.30 16 35 H 0.04 0.79 5.91 -51.93 -0.31 0.49 16 36 H 0.08 1.78 7.13 -51.93 -0.37 1.41 16 37 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.05 0.75 8.14 -51.92 -0.42 0.32 16 39 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 40 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 43 H 0.07 1.60 7.17 -51.93 -0.37 1.23 16 LS Contribution 326.54 15.07 4.92 4.92 Total: -1.00 -26.74 326.54 -10.06 -36.80 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: -6.64 Total: 9.94 kcal Atomic # 6 Polarization: -15.51 SS G_CDS: -3.06 Total: -18.57 kcal Atomic # 7 Polarization: -49.27 SS G_CDS: -0.28 Total: -49.55 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.99 Total: 16.46 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -26.74 -10.06 -36.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001474359899.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.022 kcal (2) G-P(sol) polarization free energy of solvation -26.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.801 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds