Wall clock time and date at job start Mon Mar 30 2020 01:23:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.39672 * 119.99879 * 2 1 4 4 C 1.38925 * 120.07409 * 354.03223 * 3 2 1 5 5 C 1.38086 * 119.92458 * 180.02562 * 4 3 2 6 6 C 1.38310 * 120.07344 * 359.72273 * 5 4 3 7 7 C 1.38263 * 120.14996 * 0.55041 * 6 5 4 8 8 C 1.38122 * 120.07269 * 359.44908 * 7 6 5 9 9 C 1.50704 * 120.03756 * 180.29569 * 8 7 6 10 10 N 1.46500 * 109.47235 * 263.70942 * 9 8 7 11 11 C 1.36943 * 119.99780 * 73.93288 * 10 9 8 12 12 H 1.07993 * 119.99981 * 192.23041 * 11 10 9 13 13 C 1.38814 * 119.99984 * 12.22312 * 11 10 9 14 14 N 1.31617 * 120.00024 * 32.70301 * 13 11 10 15 15 Si 1.86806 * 119.99935 * 212.70716 * 13 11 10 16 16 H 1.48497 * 109.47166 * 59.99928 * 15 13 11 17 17 H 1.48495 * 109.46784 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.46779 * 299.99951 * 15 13 11 19 19 C 1.46498 * 120.00293 * 253.93190 * 10 9 8 20 20 C 1.54262 * 110.03192 * 240.26210 * 19 10 9 21 21 C 1.54960 * 104.16205 * 217.13659 * 20 19 10 22 22 C 1.54890 * 102.77911 * 37.88497 * 21 20 19 23 23 C 1.53871 * 110.03263 * 123.04390 * 19 10 9 24 24 H 1.09010 * 109.47172 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47406 * 299.99818 * 1 2 3 26 26 H 1.09004 * 109.47330 * 60.00089 * 1 2 3 27 27 H 0.97000 * 120.00010 * 180.02562 * 2 1 3 28 28 H 1.08002 * 120.04024 * 359.97438 * 4 3 2 29 29 H 1.08003 * 119.96241 * 179.97438 * 5 4 3 30 30 H 1.08006 * 119.92371 * 180.29818 * 6 5 4 31 31 H 1.07998 * 119.96397 * 179.72242 * 7 6 5 32 32 H 1.09000 * 109.47025 * 23.71214 * 9 8 7 33 33 H 1.08996 * 109.46782 * 143.71101 * 9 8 7 34 34 H 0.96992 * 119.99873 * 179.97438 * 14 13 11 35 35 H 1.08999 * 110.01566 * 1.65351 * 19 10 9 36 36 H 1.09007 * 110.48503 * 335.78226 * 20 19 10 37 37 H 1.09001 * 110.48841 * 98.42125 * 20 19 10 38 38 H 1.09008 * 110.71827 * 279.57583 * 21 20 19 39 39 H 1.08997 * 110.92730 * 156.29792 * 21 20 19 40 40 H 1.08997 * 110.48895 * 203.40932 * 22 21 20 41 41 H 1.09003 * 110.59724 * 80.81526 * 22 21 20 42 42 H 1.09004 * 110.03083 * 238.56914 * 23 19 10 43 43 H 1.08995 * 110.03412 * 359.94843 * 23 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1633 1.2096 0.0000 4 6 1.4758 2.4104 -0.1250 5 6 2.1694 3.6044 -0.1252 6 6 3.5464 3.6061 0.0047 7 6 4.2342 2.4126 0.1236 8 6 3.5466 1.2147 0.1246 9 6 4.2965 -0.0854 0.2609 10 7 4.5325 -0.6548 -1.0681 11 6 5.4768 -0.1024 -1.8918 12 1 5.5181 -0.3866 -2.9328 13 6 6.3808 0.8232 -1.3886 14 7 6.7955 0.7281 -0.1431 15 14 7.0088 2.2037 -2.4793 16 1 5.8646 3.0321 -2.9373 17 1 7.9567 3.0495 -1.7106 18 1 7.7046 1.6262 -3.6573 19 6 3.7584 -1.8151 -1.5159 20 6 4.7038 -2.9956 -1.8198 21 6 4.0700 -3.6800 -3.0573 22 6 3.5549 -2.4780 -3.8872 23 6 3.0279 -1.4862 -2.8296 24 1 -0.3634 -1.0278 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.9500 -0.8400 -0.0004 28 1 0.4002 2.4099 -0.2228 29 1 1.6356 4.5382 -0.2227 30 1 4.0860 4.5417 0.0091 31 1 5.3098 2.4173 0.2204 32 1 5.2519 0.0962 0.7534 33 1 3.7079 -0.7836 0.8560 34 1 7.4274 1.3745 0.2083 35 1 3.0380 -2.1013 -0.7497 36 1 5.7041 -2.6324 -2.0555 37 1 4.7363 -3.6853 -0.9763 38 1 3.2442 -4.3263 -2.7598 39 1 4.8174 -4.2432 -3.6161 40 1 2.7495 -2.7905 -4.5519 41 1 4.3678 -2.0299 -4.4586 42 1 1.9530 -1.6136 -2.7011 43 1 3.2485 -0.4629 -3.1335 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001474359899.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:23 Heat of formation + Delta-G solvation = 38.426690 kcal Electronic energy + Delta-G solvation = -22653.657322 eV Core-core repulsion = 19698.568522 eV Total energy + Delta-G solvation = -2955.088800 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.51588 -39.10455 -36.25699 -36.05634 -33.02219 -31.92026 -30.31199 -29.35687 -28.29140 -27.39487 -26.47484 -24.28528 -22.18702 -21.71209 -21.35718 -20.79403 -18.41954 -17.96832 -17.32101 -16.75241 -16.24111 -16.00906 -15.81047 -15.24725 -14.95335 -14.78395 -14.64663 -14.29126 -14.14851 -13.98181 -13.26100 -13.01440 -12.93820 -12.82057 -12.70002 -12.39463 -12.20628 -12.14645 -11.84434 -11.76773 -11.74826 -11.55764 -11.43314 -11.33499 -11.23205 -10.78824 -10.41145 -9.36304 -8.66060 -8.03946 -7.66331 -5.05518 0.81708 0.94803 1.41979 1.47751 1.54629 2.57433 2.80518 3.18081 3.31613 3.80373 3.96080 4.01624 4.26455 4.27337 4.34879 4.44833 4.48005 4.63618 4.71944 4.75411 4.76193 4.82132 4.91634 4.94236 4.95096 4.96696 5.05435 5.17315 5.19854 5.22436 5.30985 5.44862 5.50048 5.61549 5.66027 5.68203 5.77212 5.84689 5.96837 6.11031 6.27816 6.55743 6.74667 6.97403 7.26165 8.04165 8.41232 9.22892 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.012439 B = 0.010649 C = 0.006718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2250.445250 B = 2628.773549 C = 4166.882047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.754 5.754 3 C 0.208 3.792 4 C -0.213 4.213 5 C -0.089 4.089 6 C -0.208 4.208 7 C -0.079 4.079 8 C -0.151 4.151 9 C 0.171 3.829 10 N -0.581 5.581 11 C -0.224 4.224 12 H 0.060 0.940 13 C -0.026 4.026 14 N -0.899 5.899 15 Si 0.907 3.093 16 H -0.294 1.294 17 H -0.295 1.295 18 H -0.287 1.287 19 C 0.169 3.831 20 C -0.135 4.135 21 C -0.111 4.111 22 C -0.117 4.117 23 C -0.123 4.123 24 H 0.090 0.910 25 H 0.053 0.947 26 H 0.049 0.951 27 H 0.396 0.604 28 H 0.136 0.864 29 H 0.139 0.861 30 H 0.112 0.888 31 H 0.104 0.896 32 H 0.091 0.909 33 H 0.033 0.967 34 H 0.246 0.754 35 H 0.061 0.939 36 H 0.045 0.955 37 H 0.057 0.943 38 H 0.081 0.919 39 H 0.065 0.935 40 H 0.077 0.923 41 H 0.042 0.958 42 H 0.064 0.936 43 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.851 -3.839 -0.601 13.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.386 5.386 3 C 0.105 3.895 4 C -0.235 4.235 5 C -0.108 4.108 6 C -0.228 4.228 7 C -0.099 4.099 8 C -0.158 4.158 9 C 0.045 3.955 10 N -0.299 5.299 11 C -0.354 4.354 12 H 0.078 0.922 13 C -0.222 4.222 14 N -0.547 5.547 15 Si 0.739 3.261 16 H -0.222 1.222 17 H -0.221 1.221 18 H -0.214 1.214 19 C 0.063 3.937 20 C -0.175 4.175 21 C -0.149 4.149 22 C -0.155 4.155 23 C -0.163 4.163 24 H 0.109 0.891 25 H 0.072 0.928 26 H 0.067 0.933 27 H 0.232 0.768 28 H 0.154 0.846 29 H 0.157 0.843 30 H 0.130 0.870 31 H 0.122 0.878 32 H 0.108 0.892 33 H 0.051 0.949 34 H 0.057 0.943 35 H 0.079 0.921 36 H 0.063 0.937 37 H 0.076 0.924 38 H 0.100 0.900 39 H 0.083 0.917 40 H 0.095 0.905 41 H 0.061 0.939 42 H 0.083 0.917 43 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -12.953 -3.771 -0.511 13.500 hybrid contribution 1.187 0.936 -0.598 1.626 sum -11.765 -2.834 -1.109 12.153 Atomic orbital electron populations 1.21614 0.79074 1.03342 1.00891 1.44669 1.06217 1.04844 1.82844 1.17848 0.90544 0.87290 0.93860 1.20739 0.99980 0.91073 1.11724 1.20989 0.93438 0.98093 0.98259 1.21052 0.95455 0.97333 1.08998 1.21154 0.99815 0.92558 0.96370 1.20302 0.92165 0.97454 1.05831 1.20113 0.99809 0.88798 0.86766 1.44322 1.39631 1.30996 1.14971 1.18934 1.07255 1.18080 0.91151 0.92200 1.24666 0.98807 1.02469 0.96275 1.69993 1.32444 1.36014 1.16249 0.86219 0.77171 0.83005 0.79717 1.22218 1.22140 1.21358 1.21217 0.91788 0.86320 0.94415 1.22817 0.99641 0.97207 0.97821 1.22395 1.00114 0.96718 0.95641 1.22260 0.99910 0.95945 0.97338 1.22460 0.98932 0.98600 0.96268 0.89103 0.92835 0.93260 0.76792 0.84629 0.84338 0.87004 0.87812 0.89232 0.94904 0.94346 0.92099 0.93656 0.92448 0.90009 0.91673 0.90485 0.93887 0.91746 0.94347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.03 9.99 127.77 1.28 3.31 16 2 N -0.75 -23.22 5.76 -360.81 -2.08 -25.29 16 3 C 0.21 7.87 6.63 38.21 0.25 8.13 16 4 C -0.21 -7.23 9.32 22.40 0.21 -7.02 16 5 C -0.09 -3.08 10.04 22.25 0.22 -2.85 16 6 C -0.21 -8.43 10.04 22.29 0.22 -8.20 16 7 C -0.08 -3.69 8.69 22.25 0.19 -3.50 16 8 C -0.15 -6.74 5.21 -19.73 -0.10 -6.84 16 9 C 0.17 7.92 4.88 85.63 0.42 8.34 16 10 N -0.58 -26.84 2.54 -678.33 -1.72 -28.56 16 11 C -0.22 -11.81 7.43 84.03 0.62 -11.18 16 12 H 0.06 3.24 7.60 -2.91 -0.02 3.22 16 13 C -0.03 -1.43 3.29 84.86 0.28 -1.15 16 14 N -0.90 -50.31 9.28 21.65 0.20 -50.11 16 15 Si 0.91 45.72 29.37 68.60 2.02 47.73 16 16 H -0.29 -15.23 7.11 99.48 0.71 -14.52 16 17 H -0.30 -14.89 7.11 99.48 0.71 -14.19 16 18 H -0.29 -14.25 7.11 99.48 0.71 -13.54 16 19 C 0.17 6.33 2.97 45.71 0.14 6.46 16 20 C -0.14 -4.82 6.42 31.69 0.20 -4.62 16 21 C -0.11 -3.09 6.91 31.91 0.22 -2.87 16 22 C -0.12 -3.51 6.83 31.67 0.22 -3.29 16 23 C -0.12 -4.26 6.08 31.32 0.19 -4.07 16 24 H 0.09 1.46 8.14 -2.38 -0.02 1.44 16 25 H 0.05 1.07 8.13 -2.39 -0.02 1.05 16 26 H 0.05 1.03 7.72 -2.39 -0.02 1.01 16 27 H 0.40 12.47 4.71 -92.71 -0.44 12.04 16 28 H 0.14 3.73 6.73 -2.91 -0.02 3.71 16 29 H 0.14 3.76 8.06 -2.91 -0.02 3.74 16 30 H 0.11 4.14 8.06 -2.91 -0.02 4.11 16 31 H 0.10 5.36 5.42 -2.91 -0.02 5.35 16 32 H 0.09 4.86 5.04 -2.39 -0.01 4.85 16 33 H 0.03 1.39 6.56 -2.39 -0.02 1.37 16 34 H 0.25 13.67 8.31 -92.71 -0.77 12.90 16 35 H 0.06 2.06 5.91 -2.39 -0.01 2.05 16 36 H 0.04 1.96 7.13 -2.38 -0.02 1.94 16 37 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.08 1.88 8.14 -2.38 -0.02 1.86 16 39 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 41 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 42 H 0.06 1.93 8.14 -2.38 -0.02 1.91 16 43 H 0.04 1.61 7.17 -2.39 -0.02 1.60 16 Total: -1.00 -60.37 326.54 3.54 -56.83 By element: Atomic # 1 Polarization: 28.19 SS G_CDS: 0.56 Total: 28.75 kcal Atomic # 6 Polarization: -33.92 SS G_CDS: 4.56 Total: -29.35 kcal Atomic # 7 Polarization: -100.36 SS G_CDS: -3.60 Total: -103.96 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.02 Total: 47.73 kcal Total: -60.37 3.54 -56.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001474359899.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.255 kcal (2) G-P(sol) polarization free energy of solvation -60.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.828 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds