Wall clock time and date at job start Mon Mar 30 2020 01:07:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.46860 * 2 1 4 4 C 1.52998 * 109.47003 * 239.99950 * 2 1 3 5 5 C 1.50707 * 109.47006 * 65.00320 * 4 2 1 6 6 H 1.07996 * 119.99871 * 0.02562 * 5 4 2 7 7 C 1.37879 * 119.99966 * 179.97438 * 5 4 2 8 8 N 1.31520 * 119.99911 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99820 * 179.97438 * 7 5 4 10 10 H 1.48493 * 109.47440 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.46880 * 120.00542 * 9 7 5 12 12 H 1.48503 * 109.47137 * 240.00094 * 9 7 5 13 13 C 1.53000 * 109.46913 * 120.00378 * 2 1 3 14 14 N 1.46906 * 109.47072 * 294.99925 * 13 2 1 15 15 C 1.47160 * 110.99790 * 292.99043 * 14 13 2 16 16 C 1.52901 * 108.49333 * 165.33970 * 15 14 13 17 17 C 1.50736 * 109.94900 * 50.43203 * 16 15 14 18 18 C 1.38741 * 118.44958 * 163.19392 * 17 16 15 19 19 C 1.38073 * 120.50776 * 179.78199 * 18 17 16 20 20 C 1.38127 * 119.91253 * 359.97438 * 19 18 17 21 21 C 1.38698 * 119.78099 * 0.05973 * 20 19 18 22 22 N 1.39679 * 119.88501 * 179.97438 * 21 20 19 23 23 C 1.37705 * 121.65004 * 343.10171 * 17 16 15 24 24 C 1.46619 * 111.00028 * 170.00204 * 14 13 2 25 25 H 1.08995 * 109.47281 * 300.00077 * 1 2 3 26 26 H 1.09000 * 109.46871 * 59.99540 * 1 2 3 27 27 H 1.08999 * 109.47528 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46907 * 185.00172 * 4 2 1 29 29 H 1.09002 * 109.47546 * 305.00329 * 4 2 1 30 30 H 0.96993 * 119.99901 * 180.02562 * 8 7 5 31 31 H 1.08993 * 109.47007 * 174.99975 * 13 2 1 32 32 H 1.08996 * 109.47340 * 54.99781 * 13 2 1 33 33 H 1.08998 * 109.63368 * 285.03955 * 15 14 13 34 34 H 1.09008 * 109.63715 * 45.63820 * 15 14 13 35 35 H 1.09000 * 109.39660 * 290.28238 * 16 15 14 36 36 H 1.08996 * 109.30347 * 170.52601 * 16 15 14 37 37 H 1.08004 * 119.74221 * 359.79861 * 18 17 16 38 38 H 1.08002 * 120.04481 * 179.97438 * 19 18 17 39 39 H 1.07999 * 120.11364 * 180.02562 * 20 19 18 40 40 H 0.97002 * 119.99681 * 180.02562 * 22 21 20 41 41 H 0.96993 * 120.00515 * 0.02661 * 22 21 20 42 42 H 1.09001 * 109.26880 * 296.10202 * 24 14 13 43 43 H 1.09005 * 109.27237 * 55.56873 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6414 0.0571 -2.4766 6 1 1.0808 0.9747 -2.3756 7 6 1.9933 -0.4016 -3.7283 8 7 2.6764 -1.5187 -3.8512 9 14 1.4985 0.5628 -5.2496 10 1 0.7413 1.7739 -4.8435 11 1 2.7164 0.9684 -5.9964 12 1 0.6451 -0.2868 -6.1186 13 6 2.0400 -0.7213 1.2492 14 7 1.6513 0.0373 2.4457 15 6 2.3527 1.3298 2.5014 16 6 1.6561 2.2154 3.5351 17 6 1.4894 1.4612 4.8295 18 6 1.2108 2.1809 5.9826 19 6 1.0454 1.5328 7.1905 20 6 1.1570 0.1576 7.2553 21 6 1.4361 -0.5659 6.1053 22 7 1.5498 -1.9566 6.1684 23 6 1.6052 0.0903 4.8871 24 6 1.9119 -0.7344 3.6648 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 3.1263 -0.7995 -1.2055 29 1 1.6054 -1.7198 -1.2952 30 1 2.9243 -1.8412 -4.7317 31 1 3.1262 -0.7996 1.2056 32 1 1.6054 -1.7198 1.2951 33 1 3.3903 1.1711 2.7949 34 1 2.3149 1.8096 1.5233 35 1 0.6763 2.5092 3.1586 36 1 2.2586 3.1066 3.7105 37 1 1.1224 3.2562 5.9348 38 1 0.8292 2.1004 8.0835 39 1 1.0278 -0.3527 8.1983 40 1 1.7454 -2.4642 5.3653 41 1 1.4333 -2.4149 7.0153 42 1 1.2857 -1.6266 3.6665 43 1 2.9605 -1.0316 3.6853 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001575941132.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:09 Heat of formation + Delta-G solvation = 9.910429 kcal Electronic energy + Delta-G solvation = -21062.284605 eV Core-core repulsion = 18105.959247 eV Total energy + Delta-G solvation = -2956.325358 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.21299 -37.68095 -35.18373 -34.61365 -32.44349 -31.32080 -30.41732 -28.26421 -26.92374 -25.98691 -24.00567 -23.54586 -22.12309 -21.47944 -19.57992 -18.78422 -17.27201 -16.64885 -16.30747 -15.69400 -15.06853 -14.98186 -14.61887 -14.40609 -13.94755 -13.76684 -13.52210 -13.16767 -12.81349 -12.49810 -12.28576 -12.05981 -11.88271 -11.64227 -11.41208 -11.29999 -10.88069 -10.80179 -10.68269 -10.59583 -10.42616 -10.25333 -10.16496 -9.55437 -9.11856 -8.92290 -8.53986 -8.31510 -8.03495 -7.51209 -5.96401 -3.97197 1.42566 1.61511 3.33072 3.40735 3.44948 3.75459 3.83312 4.15963 4.49997 4.75908 4.78182 5.03615 5.22511 5.28508 5.39159 5.40908 5.46892 5.52834 5.57545 5.71139 5.76679 5.87176 5.95090 5.98972 6.07947 6.17630 6.20105 6.32663 6.41406 6.53968 6.57569 6.71438 6.74751 6.86087 7.05366 7.16882 7.24190 7.37654 7.41511 7.48020 7.63187 7.71530 7.87251 8.04191 8.48462 9.09508 9.66222 11.15240 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.037093 B = 0.003481 C = 0.003291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.685278 B = 8042.493009 C = 8505.749154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.080 4.080 3 H 0.057 0.943 4 C 0.027 3.973 5 C -0.510 4.510 6 H 0.057 0.943 7 C 0.054 3.946 8 N -0.897 5.897 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.059 3.941 14 N -0.525 5.525 15 C 0.047 3.953 16 C -0.077 4.077 17 C -0.017 4.017 18 C -0.182 4.182 19 C -0.075 4.075 20 C -0.209 4.209 21 C 0.220 3.780 22 N -0.879 5.879 23 C -0.149 4.149 24 C 0.102 3.898 25 H 0.042 0.958 26 H 0.053 0.947 27 H 0.038 0.962 28 H 0.012 0.988 29 H 0.016 0.984 30 H 0.258 0.742 31 H 0.029 0.971 32 H 0.068 0.932 33 H 0.033 0.967 34 H 0.090 0.910 35 H 0.086 0.914 36 H 0.076 0.924 37 H 0.116 0.884 38 H 0.117 0.883 39 H 0.116 0.884 40 H 0.398 0.602 41 H 0.396 0.604 42 H 0.076 0.924 43 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.657 3.083 21.716 21.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.099 4.099 3 H 0.075 0.925 4 C -0.011 4.011 5 C -0.549 4.549 6 H 0.075 0.925 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.717 3.283 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.211 1.211 13 C -0.068 4.068 14 N -0.249 5.249 15 C -0.081 4.081 16 C -0.115 4.115 17 C -0.018 4.018 18 C -0.202 4.202 19 C -0.094 4.094 20 C -0.232 4.232 21 C 0.115 3.885 22 N -0.419 5.419 23 C -0.154 4.154 24 C -0.026 4.026 25 H 0.061 0.939 26 H 0.072 0.928 27 H 0.057 0.943 28 H 0.030 0.970 29 H 0.034 0.966 30 H 0.068 0.932 31 H 0.048 0.952 32 H 0.087 0.913 33 H 0.052 0.948 34 H 0.108 0.892 35 H 0.104 0.896 36 H 0.094 0.906 37 H 0.134 0.866 38 H 0.135 0.865 39 H 0.134 0.866 40 H 0.227 0.773 41 H 0.223 0.777 42 H 0.094 0.906 43 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -2.094 3.088 21.540 21.860 hybrid contribution 0.678 -0.229 -0.755 1.041 sum -1.416 2.859 20.785 21.028 Atomic orbital electron populations 1.21578 0.95723 1.00482 1.00191 1.21228 0.96008 0.99045 0.93597 0.92474 1.19135 0.95876 0.95581 0.90495 1.21277 1.34400 1.08248 0.90949 0.92492 1.25024 0.95368 0.95103 0.99102 1.69977 1.39240 1.21289 1.23234 0.86581 0.78235 0.80156 0.83312 1.19722 1.21144 1.21110 1.22343 0.97639 0.97266 0.89568 1.62312 1.57329 1.03869 1.01399 1.22218 0.94875 0.90946 1.00014 1.20593 1.01943 0.97176 0.91757 1.19400 0.95216 0.92255 0.94970 1.20838 1.07399 0.99531 0.92407 1.20741 0.97534 0.93700 0.97405 1.20411 1.11651 0.94484 0.96625 1.17656 0.93760 0.83933 0.93180 1.42544 1.82175 1.03984 1.13205 1.19064 1.09634 0.93626 0.93047 1.20687 0.98456 0.95573 0.87919 0.93857 0.92804 0.94290 0.96971 0.96609 0.93189 0.95236 0.91310 0.94850 0.89217 0.89617 0.90599 0.86605 0.86490 0.86633 0.77291 0.77651 0.90609 0.94543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.40 8.89 37.16 0.33 -2.07 16 2 C -0.08 -1.63 2.30 -90.62 -0.21 -1.84 16 3 H 0.06 1.18 6.16 -51.93 -0.32 0.86 16 4 C 0.03 0.68 4.45 -27.88 -0.12 0.56 16 5 C -0.51 -14.28 8.41 -34.44 -0.29 -14.57 16 6 H 0.06 1.56 7.06 -52.49 -0.37 1.19 16 7 C 0.05 1.56 5.46 -17.82 -0.10 1.47 16 8 N -0.90 -27.02 13.29 55.43 0.74 -26.28 16 9 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 10 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 13 C 0.06 1.03 4.33 -3.82 -0.02 1.01 16 14 N -0.53 -8.06 4.13 -236.20 -0.98 -9.03 16 15 C 0.05 0.68 5.44 -3.73 -0.02 0.66 16 16 C -0.08 -0.96 5.94 -27.92 -0.17 -1.13 16 17 C -0.02 -0.23 5.77 -104.61 -0.60 -0.83 16 18 C -0.18 -2.09 9.65 -39.46 -0.38 -2.47 16 19 C -0.08 -0.79 10.04 -39.68 -0.40 -1.19 16 20 C -0.21 -2.23 9.89 -39.45 -0.39 -2.62 16 21 C 0.22 2.54 6.73 -83.68 -0.56 1.98 16 22 N -0.88 -7.73 8.97 32.47 0.29 -7.44 16 23 C -0.15 -1.97 5.81 -104.43 -0.61 -2.57 16 24 C 0.10 1.37 4.40 -5.17 -0.02 1.35 16 25 H 0.04 0.78 7.75 -51.93 -0.40 0.37 16 26 H 0.05 1.12 6.95 -51.93 -0.36 0.76 16 27 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 28 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 29 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 31 H 0.03 0.52 8.11 -51.93 -0.42 0.10 16 32 H 0.07 1.19 8.08 -51.93 -0.42 0.77 16 33 H 0.03 0.47 8.05 -51.93 -0.42 0.06 16 34 H 0.09 1.35 5.97 -51.92 -0.31 1.04 16 35 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.12 1.12 8.06 -52.48 -0.42 0.70 16 38 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 39 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 40 H 0.40 3.29 6.94 -40.82 -0.28 3.01 16 41 H 0.40 2.57 8.84 -40.82 -0.36 2.21 16 42 H 0.08 0.97 7.07 -51.93 -0.37 0.60 16 43 H 0.04 0.49 8.13 -51.93 -0.42 0.07 16 LS Contribution 337.05 15.07 5.08 5.08 Total: -1.00 -30.86 337.05 -10.42 -41.28 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: -6.97 Total: 1.96 kcal Atomic # 6 Polarization: -18.72 SS G_CDS: -3.56 Total: -22.27 kcal Atomic # 7 Polarization: -42.81 SS G_CDS: 0.05 Total: -42.76 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -30.86 -10.42 -41.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001575941132.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.186 kcal (2) G-P(sol) polarization free energy of solvation -30.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.276 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds