Wall clock time and date at job start Mon Mar 30 2020 01:07:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.46860 * 2 1 4 4 C 1.52998 * 109.47003 * 239.99950 * 2 1 3 5 5 C 1.50707 * 109.47006 * 65.00320 * 4 2 1 6 6 H 1.07996 * 119.99871 * 0.02562 * 5 4 2 7 7 C 1.37879 * 119.99966 * 179.97438 * 5 4 2 8 8 N 1.31520 * 119.99911 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99820 * 179.97438 * 7 5 4 10 10 H 1.48493 * 109.47440 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.46880 * 120.00542 * 9 7 5 12 12 H 1.48503 * 109.47137 * 240.00094 * 9 7 5 13 13 C 1.53000 * 109.46913 * 120.00378 * 2 1 3 14 14 N 1.46906 * 109.47072 * 294.99925 * 13 2 1 15 15 C 1.47160 * 110.99790 * 292.99043 * 14 13 2 16 16 C 1.52901 * 108.49333 * 165.33970 * 15 14 13 17 17 C 1.50736 * 109.94900 * 50.43203 * 16 15 14 18 18 C 1.38741 * 118.44958 * 163.19392 * 17 16 15 19 19 C 1.38073 * 120.50776 * 179.78199 * 18 17 16 20 20 C 1.38127 * 119.91253 * 359.97438 * 19 18 17 21 21 C 1.38698 * 119.78099 * 0.05973 * 20 19 18 22 22 N 1.39679 * 119.88501 * 179.97438 * 21 20 19 23 23 C 1.37705 * 121.65004 * 343.10171 * 17 16 15 24 24 C 1.46619 * 111.00028 * 170.00204 * 14 13 2 25 25 H 1.08995 * 109.47281 * 300.00077 * 1 2 3 26 26 H 1.09000 * 109.46871 * 59.99540 * 1 2 3 27 27 H 1.08999 * 109.47528 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46907 * 185.00172 * 4 2 1 29 29 H 1.09002 * 109.47546 * 305.00329 * 4 2 1 30 30 H 0.96993 * 119.99901 * 180.02562 * 8 7 5 31 31 H 1.08993 * 109.47007 * 174.99975 * 13 2 1 32 32 H 1.08996 * 109.47340 * 54.99781 * 13 2 1 33 33 H 1.08998 * 109.63368 * 285.03955 * 15 14 13 34 34 H 1.09008 * 109.63715 * 45.63820 * 15 14 13 35 35 H 1.09000 * 109.39660 * 290.28238 * 16 15 14 36 36 H 1.08996 * 109.30347 * 170.52601 * 16 15 14 37 37 H 1.08004 * 119.74221 * 359.79861 * 18 17 16 38 38 H 1.08002 * 120.04481 * 179.97438 * 19 18 17 39 39 H 1.07999 * 120.11364 * 180.02562 * 20 19 18 40 40 H 0.97002 * 119.99681 * 180.02562 * 22 21 20 41 41 H 0.96993 * 120.00515 * 0.02661 * 22 21 20 42 42 H 1.09001 * 109.26880 * 296.10202 * 24 14 13 43 43 H 1.09005 * 109.27237 * 55.56873 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6414 0.0571 -2.4766 6 1 1.0808 0.9747 -2.3756 7 6 1.9933 -0.4016 -3.7283 8 7 2.6764 -1.5187 -3.8512 9 14 1.4985 0.5628 -5.2496 10 1 0.7413 1.7739 -4.8435 11 1 2.7164 0.9684 -5.9964 12 1 0.6451 -0.2868 -6.1186 13 6 2.0400 -0.7213 1.2492 14 7 1.6513 0.0373 2.4457 15 6 2.3527 1.3298 2.5014 16 6 1.6561 2.2154 3.5351 17 6 1.4894 1.4612 4.8295 18 6 1.2108 2.1809 5.9826 19 6 1.0454 1.5328 7.1905 20 6 1.1570 0.1576 7.2553 21 6 1.4361 -0.5659 6.1053 22 7 1.5498 -1.9566 6.1684 23 6 1.6052 0.0903 4.8871 24 6 1.9119 -0.7344 3.6648 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 3.1263 -0.7995 -1.2055 29 1 1.6054 -1.7198 -1.2952 30 1 2.9243 -1.8412 -4.7317 31 1 3.1262 -0.7996 1.2056 32 1 1.6054 -1.7198 1.2951 33 1 3.3903 1.1711 2.7949 34 1 2.3149 1.8096 1.5233 35 1 0.6763 2.5092 3.1586 36 1 2.2586 3.1066 3.7105 37 1 1.1224 3.2562 5.9348 38 1 0.8292 2.1004 8.0835 39 1 1.0278 -0.3527 8.1983 40 1 1.7454 -2.4642 5.3653 41 1 1.4333 -2.4149 7.0153 42 1 1.2857 -1.6266 3.6665 43 1 2.9605 -1.0316 3.6853 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001575941132.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:08 Heat of formation + Delta-G solvation = -8.329406 kcal Electronic energy + Delta-G solvation = -21063.075544 eV Core-core repulsion = 18105.959247 eV Total energy + Delta-G solvation = -2957.116297 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.15812 -38.89565 -36.51679 -35.73484 -34.29962 -32.54937 -31.43840 -29.24257 -28.78505 -27.34119 -25.51759 -24.70364 -23.62995 -22.35845 -20.76456 -20.26654 -18.55615 -18.01121 -17.47994 -16.76850 -16.50824 -16.20971 -15.97904 -15.65988 -15.30221 -14.82947 -14.58387 -14.40929 -14.27557 -13.84543 -13.72816 -13.33214 -13.23435 -13.01704 -12.76474 -12.62929 -12.57922 -12.48308 -12.21763 -11.98543 -11.84869 -11.53274 -11.30346 -11.24522 -11.03629 -10.84034 -10.52356 -9.47717 -9.23182 -8.31473 -8.16620 -6.25318 0.55839 0.77433 1.40482 1.41147 1.54159 2.42771 2.88600 2.99710 3.09646 3.17053 3.80664 3.82336 4.10888 4.16198 4.26347 4.30206 4.39979 4.42041 4.53655 4.54746 4.66714 4.76370 4.79165 4.85188 4.88007 4.95262 5.05768 5.08117 5.12765 5.24494 5.29161 5.46954 5.49218 5.51458 5.56480 5.70904 5.81372 5.83159 5.90291 6.04476 6.14449 6.20961 6.33870 6.63213 6.90781 7.00108 7.42920 8.95713 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.037093 B = 0.003481 C = 0.003291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.685278 B = 8042.493009 C = 8505.749154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.070 4.070 3 H 0.056 0.944 4 C 0.033 3.967 5 C -0.526 4.526 6 H 0.061 0.939 7 C -0.003 4.003 8 N -0.936 5.936 9 Si 0.960 3.040 10 H -0.261 1.261 11 H -0.280 1.280 12 H -0.280 1.280 13 C 0.071 3.929 14 N -0.528 5.528 15 C 0.046 3.954 16 C -0.071 4.071 17 C -0.035 4.035 18 C -0.192 4.192 19 C -0.075 4.075 20 C -0.215 4.215 21 C 0.213 3.787 22 N -0.872 5.872 23 C -0.176 4.176 24 C 0.106 3.894 25 H 0.062 0.938 26 H 0.038 0.962 27 H 0.035 0.965 28 H -0.015 1.015 29 H -0.010 1.010 30 H 0.261 0.739 31 H 0.021 0.979 32 H 0.069 0.931 33 H 0.031 0.969 34 H 0.078 0.922 35 H 0.083 0.917 36 H 0.094 0.906 37 H 0.131 0.869 38 H 0.143 0.857 39 H 0.138 0.862 40 H 0.400 0.600 41 H 0.407 0.593 42 H 0.081 0.919 43 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.522 4.229 23.284 23.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.089 4.089 3 H 0.075 0.925 4 C -0.004 4.004 5 C -0.564 4.564 6 H 0.079 0.921 7 C -0.200 4.200 8 N -0.577 5.577 9 Si 0.785 3.215 10 H -0.185 1.185 11 H -0.206 1.206 12 H -0.206 1.206 13 C -0.057 4.057 14 N -0.252 5.252 15 C -0.082 4.082 16 C -0.108 4.108 17 C -0.036 4.036 18 C -0.212 4.212 19 C -0.093 4.093 20 C -0.237 4.237 21 C 0.107 3.893 22 N -0.412 5.412 23 C -0.180 4.180 24 C -0.022 4.022 25 H 0.081 0.919 26 H 0.057 0.943 27 H 0.054 0.946 28 H 0.004 0.996 29 H 0.009 0.991 30 H 0.070 0.930 31 H 0.039 0.961 32 H 0.087 0.913 33 H 0.049 0.951 34 H 0.097 0.903 35 H 0.101 0.899 36 H 0.113 0.887 37 H 0.149 0.851 38 H 0.161 0.839 39 H 0.156 0.844 40 H 0.229 0.771 41 H 0.237 0.763 42 H 0.099 0.901 43 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -2.965 4.226 23.136 23.705 hybrid contribution 0.967 -0.619 -1.159 1.631 sum -1.998 3.608 21.977 22.360 Atomic orbital electron populations 1.21458 0.94754 1.00321 1.00329 1.21025 0.96625 0.98539 0.92725 0.92534 1.19012 0.94037 0.94712 0.92670 1.21663 1.34217 1.08510 0.92024 0.92098 1.25942 0.95301 0.96103 1.02617 1.70107 1.40422 1.22976 1.24181 0.85467 0.78055 0.78929 0.79031 1.18537 1.20572 1.20592 1.22062 0.96936 0.97140 0.89551 1.62270 1.57430 1.04212 1.01243 1.22246 0.95053 0.90707 1.00153 1.20552 1.01816 0.97342 0.91113 1.19558 0.96040 0.92431 0.95580 1.21059 1.07418 1.00411 0.92294 1.21109 0.96218 0.93949 0.98033 1.20743 1.10999 0.94835 0.97168 1.17805 0.93509 0.84959 0.93013 1.42533 1.81450 1.03197 1.14010 1.19127 1.11610 0.93987 0.93320 1.20659 0.98428 0.95702 0.87377 0.91872 0.94313 0.94581 0.99629 0.99116 0.92982 0.96063 0.91254 0.95072 0.90338 0.89910 0.88722 0.85071 0.83888 0.84449 0.77081 0.76265 0.90131 0.94821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.35 8.89 71.98 0.64 -3.71 16 2 C -0.07 -2.92 2.30 -10.79 -0.02 -2.95 16 3 H 0.06 2.35 6.16 -2.39 -0.01 2.34 16 4 C 0.03 1.76 4.45 29.85 0.13 1.89 16 5 C -0.53 -29.91 8.41 25.60 0.22 -29.69 16 6 H 0.06 3.34 7.06 -2.91 -0.02 3.32 16 7 C 0.00 -0.15 5.46 84.65 0.46 0.31 16 8 N -0.94 -57.48 13.29 21.45 0.28 -57.19 16 9 Si 0.96 44.75 29.54 68.60 2.03 46.77 16 10 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 11 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 12 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 13 C 0.07 2.50 4.33 86.30 0.37 2.88 16 14 N -0.53 -16.02 4.13 -901.21 -3.72 -19.75 16 15 C 0.05 1.30 5.44 86.22 0.47 1.77 16 16 C -0.07 -1.68 5.94 29.83 0.18 -1.50 16 17 C -0.04 -0.86 5.77 -19.86 -0.11 -0.98 16 18 C -0.19 -3.98 9.65 22.35 0.22 -3.76 16 19 C -0.07 -1.36 10.04 22.20 0.22 -1.14 16 20 C -0.21 -4.01 9.89 22.35 0.22 -3.79 16 21 C 0.21 4.55 6.73 38.28 0.26 4.81 16 22 N -0.87 -13.84 8.97 -51.20 -0.46 -14.30 16 23 C -0.18 -4.43 5.81 -19.74 -0.11 -4.55 16 24 C 0.11 2.81 4.40 85.58 0.38 3.19 16 25 H 0.06 2.20 7.75 -2.39 -0.02 2.19 16 26 H 0.04 1.60 6.95 -2.39 -0.02 1.59 16 27 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 28 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 29 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 30 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 31 H 0.02 0.78 8.11 -2.39 -0.02 0.76 16 32 H 0.07 2.43 8.08 -2.39 -0.02 2.41 16 33 H 0.03 0.88 8.05 -2.39 -0.02 0.86 16 34 H 0.08 2.36 5.97 -2.38 -0.01 2.35 16 35 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.13 2.21 8.06 -2.91 -0.02 2.19 16 38 H 0.14 1.79 8.06 -2.91 -0.02 1.76 16 39 H 0.14 1.89 8.06 -2.91 -0.02 1.87 16 40 H 0.40 6.13 6.94 -92.71 -0.64 5.48 16 41 H 0.41 4.43 8.84 -92.71 -0.82 3.61 16 42 H 0.08 2.00 7.07 -2.39 -0.02 1.99 16 43 H 0.03 0.90 8.13 -2.38 -0.02 0.88 16 Total: -1.00 -66.22 337.05 1.18 -65.04 By element: Atomic # 1 Polarization: 17.10 SS G_CDS: -0.46 Total: 16.64 kcal Atomic # 6 Polarization: -40.72 SS G_CDS: 3.51 Total: -37.21 kcal Atomic # 7 Polarization: -87.34 SS G_CDS: -3.90 Total: -91.24 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.77 kcal Total: -66.22 1.18 -65.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001575941132.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.713 kcal (2) G-P(sol) polarization free energy of solvation -66.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds