Wall clock time and date at job start Mon Mar 30 2020 01:07:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.46865 * 2 1 4 4 C 1.52992 * 109.47117 * 119.99888 * 2 1 3 5 5 C 1.50706 * 109.47218 * 295.00109 * 4 2 1 6 6 H 1.07991 * 119.99876 * 0.02562 * 5 4 2 7 7 C 1.37880 * 119.99833 * 180.02562 * 5 4 2 8 8 N 1.31511 * 120.00201 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99700 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.47081 * 90.00123 * 9 7 5 11 11 H 1.48504 * 109.46945 * 209.99846 * 9 7 5 12 12 H 1.48497 * 109.47237 * 330.00276 * 9 7 5 13 13 C 1.53001 * 109.47230 * 240.00241 * 2 1 3 14 14 N 1.46897 * 109.47138 * 64.99695 * 13 2 1 15 15 C 1.47162 * 111.00535 * 47.01606 * 14 13 2 16 16 C 1.52895 * 108.48941 * 52.17474 * 15 14 13 17 17 C 1.50730 * 109.95629 * 50.42099 * 16 15 14 18 18 C 1.38750 * 118.45259 * 163.20274 * 17 16 15 19 19 C 1.38079 * 120.51188 * 179.80056 * 18 17 16 20 20 C 1.38126 * 119.90461 * 359.97438 * 19 18 17 21 21 C 1.38700 * 119.78862 * 0.07748 * 20 19 18 22 22 N 1.39675 * 119.88785 * 179.97438 * 21 20 19 23 23 C 1.37692 * 121.65330 * 343.12148 * 17 16 15 24 24 C 1.46627 * 110.99817 * 170.00243 * 14 13 2 25 25 H 1.09006 * 109.47481 * 300.00126 * 1 2 3 26 26 H 1.09001 * 109.47278 * 60.00016 * 1 2 3 27 27 H 1.09007 * 109.46865 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47643 * 55.00153 * 4 2 1 29 29 H 1.09007 * 109.47259 * 175.00399 * 4 2 1 30 30 H 0.97002 * 119.99937 * 179.97438 * 8 7 5 31 31 H 1.09008 * 109.46560 * 304.99749 * 13 2 1 32 32 H 1.08994 * 109.46833 * 185.00217 * 13 2 1 33 33 H 1.08998 * 109.63746 * 292.47317 * 15 14 13 34 34 H 1.08994 * 109.62917 * 171.87101 * 15 14 13 35 35 H 1.09003 * 109.39415 * 290.27308 * 16 15 14 36 36 H 1.09007 * 109.31118 * 170.51566 * 16 15 14 37 37 H 1.08007 * 119.74199 * 359.77684 * 18 17 16 38 38 H 1.08000 * 120.04509 * 179.97438 * 19 18 17 39 39 H 1.08003 * 120.10441 * 180.02562 * 20 19 18 40 40 H 0.97001 * 119.99539 * 180.02562 * 22 21 20 41 41 H 0.97001 * 119.99887 * 0.02562 * 22 21 20 42 42 H 1.09006 * 109.26871 * 168.74546 * 24 14 13 43 43 H 1.09000 * 109.27536 * 49.27605 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6413 0.0571 2.4766 6 1 1.0799 0.9742 2.3757 7 6 1.9932 -0.4016 3.7283 8 7 2.6772 -1.5181 3.8511 9 14 1.4996 0.5635 5.2496 10 1 0.1725 0.0953 5.7238 11 1 2.5093 0.3536 6.3181 12 1 1.4246 2.0086 4.9162 13 6 2.0400 -0.7212 -1.2493 14 7 1.6514 0.0375 -2.4456 15 6 1.9517 1.4689 -2.2832 16 6 3.4143 1.6126 -1.8613 17 6 4.2979 0.8202 -2.7904 18 6 5.6581 1.0943 -2.8029 19 6 6.5072 0.3913 -3.6344 20 6 6.0023 -0.5933 -4.4611 21 6 4.6432 -0.8700 -4.4528 22 7 4.1304 -1.8649 -5.2884 23 6 3.7874 -0.1579 -3.6140 24 6 2.3182 -0.4885 -3.6409 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.6054 -1.7198 1.2952 29 1 3.1263 -0.7994 1.2056 30 1 2.9252 -1.8407 4.7317 31 1 1.6054 -1.7198 -1.2951 32 1 3.1263 -0.7994 -1.2055 33 1 1.3055 1.8939 -1.5151 34 1 1.7908 1.9864 -3.2288 35 1 3.5354 1.2423 -0.8432 36 1 3.6990 2.6641 -1.9002 37 1 6.0556 1.8636 -2.1574 38 1 7.5646 0.6111 -3.6383 39 1 6.6636 -1.1454 -5.1125 40 1 3.1801 -2.0594 -5.2841 41 1 4.7245 -2.3612 -5.8728 42 1 1.8662 -0.0463 -4.5289 43 1 2.1936 -1.5708 -3.6756 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001575941133.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:12 Heat of formation + Delta-G solvation = 15.010034 kcal Electronic energy + Delta-G solvation = -21691.892027 eV Core-core repulsion = 18735.787804 eV Total energy + Delta-G solvation = -2956.104223 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.50631 -37.81377 -34.89590 -34.52382 -32.19313 -31.18259 -30.25024 -28.08355 -26.96904 -26.22962 -24.09655 -23.37738 -22.20996 -21.43440 -19.47758 -18.59078 -17.21685 -16.60009 -16.29323 -15.77028 -14.96571 -14.94693 -14.59890 -14.34400 -13.86131 -13.59666 -13.49215 -13.16409 -12.61709 -12.31890 -12.08088 -12.02890 -11.71053 -11.55835 -11.38127 -11.15171 -11.10446 -10.80802 -10.73577 -10.52673 -10.35946 -10.24129 -10.12487 -9.57949 -9.11625 -8.90544 -8.42004 -8.29600 -7.95233 -7.44985 -5.94524 -3.95683 1.50168 1.71249 3.34733 3.41105 3.44055 3.82461 3.92329 4.29779 4.51012 4.84211 4.93799 5.10958 5.24747 5.37030 5.41285 5.44192 5.53929 5.60177 5.72173 5.78635 5.90147 5.91061 5.97318 6.06725 6.17013 6.20821 6.34349 6.37309 6.50066 6.60726 6.64402 6.70702 6.83581 6.95957 7.06298 7.15407 7.23568 7.40619 7.48057 7.49597 7.69665 7.73597 7.89050 8.05968 8.49555 9.10838 9.67603 11.16978 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.023407 B = 0.004521 C = 0.004270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.947517 B = 6192.040952 C = 6555.079324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.089 4.089 3 H 0.062 0.938 4 C 0.028 3.972 5 C -0.511 4.511 6 H 0.056 0.944 7 C 0.056 3.944 8 N -0.897 5.897 9 Si 0.888 3.112 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.274 1.274 13 C 0.055 3.945 14 N -0.522 5.522 15 C 0.053 3.947 16 C -0.128 4.128 17 C -0.019 4.019 18 C -0.178 4.178 19 C -0.073 4.073 20 C -0.209 4.209 21 C 0.220 3.780 22 N -0.879 5.879 23 C -0.187 4.187 24 C 0.100 3.900 25 H 0.054 0.946 26 H 0.040 0.960 27 H 0.040 0.960 28 H 0.015 0.985 29 H 0.012 0.988 30 H 0.259 0.741 31 H 0.066 0.934 32 H 0.037 0.963 33 H 0.089 0.911 34 H 0.067 0.933 35 H 0.097 0.903 36 H 0.076 0.924 37 H 0.116 0.884 38 H 0.117 0.883 39 H 0.115 0.885 40 H 0.397 0.603 41 H 0.395 0.605 42 H 0.076 0.924 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.330 2.760 -18.583 19.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.108 4.108 3 H 0.080 0.920 4 C -0.010 4.010 5 C -0.550 4.550 6 H 0.074 0.926 7 C -0.145 4.145 8 N -0.536 5.536 9 Si 0.716 3.284 10 H -0.207 1.207 11 H -0.214 1.214 12 H -0.199 1.199 13 C -0.072 4.072 14 N -0.243 5.243 15 C -0.075 4.075 16 C -0.166 4.166 17 C -0.020 4.020 18 C -0.198 4.198 19 C -0.092 4.092 20 C -0.232 4.232 21 C 0.115 3.885 22 N -0.419 5.419 23 C -0.193 4.193 24 C -0.029 4.029 25 H 0.073 0.927 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.033 0.967 29 H 0.030 0.970 30 H 0.069 0.931 31 H 0.085 0.915 32 H 0.055 0.945 33 H 0.107 0.893 34 H 0.086 0.914 35 H 0.115 0.885 36 H 0.095 0.905 37 H 0.134 0.866 38 H 0.135 0.865 39 H 0.133 0.867 40 H 0.226 0.774 41 H 0.223 0.777 42 H 0.094 0.906 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.869 2.611 -18.482 18.884 hybrid contribution 0.809 0.120 0.825 1.162 sum 3.678 2.731 -17.657 18.242 Atomic orbital electron populations 1.21630 0.95827 1.00713 1.00050 1.21401 0.95903 0.99386 0.94114 0.91964 1.19109 0.95885 0.95543 0.90414 1.21225 1.34496 1.08267 0.90972 0.92609 1.25013 0.95343 0.95086 0.99047 1.69970 1.39034 1.21318 1.23303 0.86656 0.78205 0.80453 0.83052 1.20748 1.21358 1.19912 1.22370 0.98350 0.97245 0.89209 1.62752 1.55450 1.02827 1.03222 1.22217 0.93934 0.89807 1.01587 1.21310 0.95833 0.99693 0.99794 1.19377 0.94000 0.94185 0.94463 1.20866 0.92974 1.03305 1.02609 1.20754 0.99032 0.94671 0.94759 1.20436 0.93244 1.03789 1.05749 1.17657 0.92167 0.88479 0.90154 1.42514 1.11354 1.41287 1.46775 1.19828 0.97026 1.00873 1.01567 1.20873 0.87641 0.99792 0.94561 0.92732 0.94051 0.94052 0.96682 0.96976 0.93140 0.91529 0.94511 0.89259 0.91412 0.88513 0.90515 0.86557 0.86471 0.86724 0.77378 0.77716 0.90563 0.90850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.41 8.72 37.16 0.32 -2.08 16 2 C -0.09 -1.82 1.45 -90.62 -0.13 -1.95 16 3 H 0.06 1.25 4.89 -51.93 -0.25 1.00 16 4 C 0.03 0.72 4.45 -27.88 -0.12 0.60 16 5 C -0.51 -14.29 8.41 -34.44 -0.29 -14.58 16 6 H 0.06 1.52 7.05 -52.49 -0.37 1.15 16 7 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 8 N -0.90 -27.17 13.29 55.43 0.74 -26.43 16 9 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 10 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 12 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 13 C 0.06 0.99 3.85 -3.83 -0.01 0.98 16 14 N -0.52 -7.87 4.62 -236.20 -1.09 -8.96 16 15 C 0.05 0.75 5.29 -3.73 -0.02 0.73 16 16 C -0.13 -1.87 4.95 -27.92 -0.14 -2.01 16 17 C -0.02 -0.29 5.07 -104.62 -0.53 -0.82 16 18 C -0.18 -2.47 9.65 -39.45 -0.38 -2.85 16 19 C -0.07 -0.92 10.04 -39.68 -0.40 -1.32 16 20 C -0.21 -2.55 9.89 -39.45 -0.39 -2.94 16 21 C 0.22 2.76 6.73 -83.68 -0.56 2.20 16 22 N -0.88 -8.12 8.97 32.47 0.29 -7.83 16 23 C -0.19 -2.61 5.17 -104.43 -0.54 -3.15 16 24 C 0.10 1.31 4.74 -5.17 -0.02 1.29 16 25 H 0.05 1.12 6.95 -51.93 -0.36 0.76 16 26 H 0.04 0.70 7.24 -51.93 -0.38 0.33 16 27 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 31 H 0.07 1.22 8.14 -51.92 -0.42 0.80 16 32 H 0.04 0.71 6.04 -51.93 -0.31 0.40 16 33 H 0.09 1.31 6.06 -51.93 -0.31 1.00 16 34 H 0.07 0.86 8.05 -51.93 -0.42 0.45 16 35 H 0.10 1.66 5.70 -51.93 -0.30 1.36 16 36 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.12 1.47 8.06 -52.48 -0.42 1.05 16 38 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 39 H 0.11 1.14 8.06 -52.48 -0.42 0.72 16 40 H 0.40 3.26 6.94 -40.82 -0.28 2.98 16 41 H 0.40 2.79 8.84 -40.82 -0.36 2.43 16 42 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.07 0.91 6.99 -51.93 -0.36 0.55 16 LS Contribution 327.67 15.07 4.94 4.94 Total: -1.00 -30.87 327.67 -10.11 -40.98 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: -6.65 Total: 4.95 kcal Atomic # 6 Polarization: -21.08 SS G_CDS: -3.32 Total: -24.39 kcal Atomic # 7 Polarization: -43.16 SS G_CDS: -0.06 Total: -43.22 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -30.87 -10.11 -40.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001575941133.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.994 kcal (2) G-P(sol) polarization free energy of solvation -30.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.984 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds