Wall clock time and date at job start Mon Mar 30 2020 01:07:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.46865 * 2 1 4 4 C 1.52992 * 109.47117 * 119.99888 * 2 1 3 5 5 C 1.50706 * 109.47218 * 295.00109 * 4 2 1 6 6 H 1.07991 * 119.99876 * 0.02562 * 5 4 2 7 7 C 1.37880 * 119.99833 * 180.02562 * 5 4 2 8 8 N 1.31511 * 120.00201 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99700 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.47081 * 90.00123 * 9 7 5 11 11 H 1.48504 * 109.46945 * 209.99846 * 9 7 5 12 12 H 1.48497 * 109.47237 * 330.00276 * 9 7 5 13 13 C 1.53001 * 109.47230 * 240.00241 * 2 1 3 14 14 N 1.46897 * 109.47138 * 64.99695 * 13 2 1 15 15 C 1.47162 * 111.00535 * 47.01606 * 14 13 2 16 16 C 1.52895 * 108.48941 * 52.17474 * 15 14 13 17 17 C 1.50730 * 109.95629 * 50.42099 * 16 15 14 18 18 C 1.38750 * 118.45259 * 163.20274 * 17 16 15 19 19 C 1.38079 * 120.51188 * 179.80056 * 18 17 16 20 20 C 1.38126 * 119.90461 * 359.97438 * 19 18 17 21 21 C 1.38700 * 119.78862 * 0.07748 * 20 19 18 22 22 N 1.39675 * 119.88785 * 179.97438 * 21 20 19 23 23 C 1.37692 * 121.65330 * 343.12148 * 17 16 15 24 24 C 1.46627 * 110.99817 * 170.00243 * 14 13 2 25 25 H 1.09006 * 109.47481 * 300.00126 * 1 2 3 26 26 H 1.09001 * 109.47278 * 60.00016 * 1 2 3 27 27 H 1.09007 * 109.46865 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47643 * 55.00153 * 4 2 1 29 29 H 1.09007 * 109.47259 * 175.00399 * 4 2 1 30 30 H 0.97002 * 119.99937 * 179.97438 * 8 7 5 31 31 H 1.09008 * 109.46560 * 304.99749 * 13 2 1 32 32 H 1.08994 * 109.46833 * 185.00217 * 13 2 1 33 33 H 1.08998 * 109.63746 * 292.47317 * 15 14 13 34 34 H 1.08994 * 109.62917 * 171.87101 * 15 14 13 35 35 H 1.09003 * 109.39415 * 290.27308 * 16 15 14 36 36 H 1.09007 * 109.31118 * 170.51566 * 16 15 14 37 37 H 1.08007 * 119.74199 * 359.77684 * 18 17 16 38 38 H 1.08000 * 120.04509 * 179.97438 * 19 18 17 39 39 H 1.08003 * 120.10441 * 180.02562 * 20 19 18 40 40 H 0.97001 * 119.99539 * 180.02562 * 22 21 20 41 41 H 0.97001 * 119.99887 * 0.02562 * 22 21 20 42 42 H 1.09006 * 109.26871 * 168.74546 * 24 14 13 43 43 H 1.09000 * 109.27536 * 49.27605 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6413 0.0571 2.4766 6 1 1.0799 0.9742 2.3757 7 6 1.9932 -0.4016 3.7283 8 7 2.6772 -1.5181 3.8511 9 14 1.4996 0.5635 5.2496 10 1 0.1725 0.0953 5.7238 11 1 2.5093 0.3536 6.3181 12 1 1.4246 2.0086 4.9162 13 6 2.0400 -0.7212 -1.2493 14 7 1.6514 0.0375 -2.4456 15 6 1.9517 1.4689 -2.2832 16 6 3.4143 1.6126 -1.8613 17 6 4.2979 0.8202 -2.7904 18 6 5.6581 1.0943 -2.8029 19 6 6.5072 0.3913 -3.6344 20 6 6.0023 -0.5933 -4.4611 21 6 4.6432 -0.8700 -4.4528 22 7 4.1304 -1.8649 -5.2884 23 6 3.7874 -0.1579 -3.6140 24 6 2.3182 -0.4885 -3.6409 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.6054 -1.7198 1.2952 29 1 3.1263 -0.7994 1.2056 30 1 2.9252 -1.8407 4.7317 31 1 1.6054 -1.7198 -1.2951 32 1 3.1263 -0.7994 -1.2055 33 1 1.3055 1.8939 -1.5151 34 1 1.7908 1.9864 -3.2288 35 1 3.5354 1.2423 -0.8432 36 1 3.6990 2.6641 -1.9002 37 1 6.0556 1.8636 -2.1574 38 1 7.5646 0.6111 -3.6383 39 1 6.6636 -1.1454 -5.1125 40 1 3.1801 -2.0594 -5.2841 41 1 4.7245 -2.3612 -5.8728 42 1 1.8662 -0.0463 -4.5289 43 1 2.1936 -1.5708 -3.6756 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001575941133.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:12 Heat of formation + Delta-G solvation = -4.239371 kcal Electronic energy + Delta-G solvation = -21692.726743 eV Core-core repulsion = 18735.787804 eV Total energy + Delta-G solvation = -2956.938939 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.59659 -39.00838 -36.31875 -35.73738 -34.16861 -32.30296 -31.39013 -29.16305 -28.83172 -27.66210 -25.54059 -24.74700 -23.68837 -22.41291 -20.87891 -20.02707 -18.46620 -18.10720 -17.46473 -17.06420 -16.49701 -16.15600 -15.98541 -15.71592 -15.06771 -14.83232 -14.63319 -14.39140 -14.19611 -14.04501 -13.43416 -13.36433 -13.12709 -12.93521 -12.72753 -12.66522 -12.61556 -12.33315 -12.19895 -12.16045 -11.83995 -11.66914 -11.39151 -11.27542 -11.01078 -10.86342 -10.52089 -9.45067 -9.20538 -8.34747 -8.16006 -6.25283 0.49810 0.71803 1.40653 1.41761 1.52580 2.42837 2.92342 3.02120 3.09927 3.17565 3.80050 3.93375 4.07118 4.12982 4.21953 4.30202 4.38571 4.42924 4.54898 4.60980 4.64382 4.71827 4.82260 4.85706 4.94022 4.99748 5.02188 5.05746 5.10129 5.25861 5.30759 5.40059 5.49615 5.52168 5.56987 5.65642 5.81382 5.83158 5.90541 6.02491 6.12072 6.19782 6.33071 6.62228 6.90903 7.01739 7.43117 8.96255 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.023407 B = 0.004521 C = 0.004270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.947517 B = 6192.040952 C = 6555.079324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.078 4.078 3 H 0.065 0.935 4 C 0.035 3.965 5 C -0.525 4.525 6 H 0.063 0.937 7 C -0.002 4.002 8 N -0.937 5.937 9 Si 0.960 3.040 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.262 1.262 13 C 0.072 3.928 14 N -0.518 5.518 15 C 0.054 3.946 16 C -0.123 4.123 17 C -0.040 4.040 18 C -0.200 4.200 19 C -0.077 4.077 20 C -0.216 4.216 21 C 0.217 3.783 22 N -0.867 5.867 23 C -0.205 4.205 24 C 0.102 3.898 25 H 0.040 0.960 26 H 0.068 0.932 27 H 0.035 0.965 28 H -0.014 1.014 29 H -0.021 1.021 30 H 0.261 0.739 31 H 0.060 0.940 32 H 0.017 0.983 33 H 0.083 0.917 34 H 0.090 0.910 35 H 0.063 0.937 36 H 0.090 0.910 37 H 0.118 0.882 38 H 0.139 0.861 39 H 0.139 0.861 40 H 0.403 0.597 41 H 0.407 0.593 42 H 0.097 0.903 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.843 3.576 -20.085 20.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.097 4.097 3 H 0.084 0.916 4 C -0.002 4.002 5 C -0.563 4.563 6 H 0.081 0.919 7 C -0.199 4.199 8 N -0.578 5.578 9 Si 0.785 3.215 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.186 1.186 13 C -0.055 4.055 14 N -0.239 5.239 15 C -0.074 4.074 16 C -0.161 4.161 17 C -0.041 4.041 18 C -0.220 4.220 19 C -0.096 4.096 20 C -0.239 4.239 21 C 0.111 3.889 22 N -0.407 5.407 23 C -0.211 4.211 24 C -0.026 4.026 25 H 0.059 0.941 26 H 0.087 0.913 27 H 0.054 0.946 28 H 0.004 0.996 29 H -0.003 1.003 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.035 0.965 33 H 0.102 0.898 34 H 0.108 0.892 35 H 0.081 0.919 36 H 0.108 0.892 37 H 0.136 0.864 38 H 0.157 0.843 39 H 0.157 0.843 40 H 0.234 0.766 41 H 0.237 0.763 42 H 0.115 0.885 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 2.368 3.419 -20.020 20.448 hybrid contribution 1.025 -0.181 1.217 1.601 sum 3.392 3.238 -18.803 19.379 Atomic orbital electron populations 1.21531 0.94528 1.00538 1.00656 1.21196 0.96743 0.98957 0.92772 0.91643 1.18979 0.93657 0.94604 0.92984 1.21619 1.34226 1.08554 0.91902 0.91902 1.25954 0.95248 0.96076 1.02667 1.70115 1.40353 1.23141 1.24186 0.85520 0.77960 0.79393 0.78634 1.19858 1.21096 1.18578 1.22018 0.96849 0.97006 0.89667 1.62726 1.55571 1.03099 1.02514 1.22262 0.93383 0.89272 1.02509 1.21209 0.96468 1.00460 0.98009 1.19500 0.94480 0.95026 0.95122 1.21047 0.93137 1.04232 1.03582 1.21067 1.00056 0.94304 0.94129 1.20774 0.93561 1.03715 1.05844 1.17789 0.92356 0.88709 0.90093 1.42478 1.12022 1.40260 1.45971 1.19945 0.97611 1.01276 1.02282 1.20953 0.87362 1.00303 0.94018 0.94128 0.91280 0.94596 0.99552 1.00261 0.93033 0.92129 0.96478 0.89825 0.89209 0.91877 0.89176 0.86358 0.84303 0.84341 0.76647 0.76274 0.88503 0.90231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.39 8.72 71.98 0.63 -3.76 16 2 C -0.08 -3.23 1.45 -10.80 -0.02 -3.25 16 3 H 0.07 2.68 4.89 -2.38 -0.01 2.67 16 4 C 0.04 1.90 4.45 29.85 0.13 2.04 16 5 C -0.52 -29.96 8.41 25.60 0.22 -29.74 16 6 H 0.06 3.43 7.05 -2.92 -0.02 3.41 16 7 C 0.00 -0.14 5.46 84.66 0.46 0.32 16 8 N -0.94 -58.32 13.29 21.45 0.28 -58.04 16 9 Si 0.96 44.91 29.54 68.60 2.03 46.94 16 10 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 11 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 12 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 13 C 0.07 2.64 3.85 86.30 0.33 2.97 16 14 N -0.52 -15.02 4.62 -901.21 -4.16 -19.18 16 15 C 0.05 1.45 5.29 86.22 0.46 1.91 16 16 C -0.12 -3.61 4.95 29.82 0.15 -3.47 16 17 C -0.04 -1.18 5.07 -19.86 -0.10 -1.28 16 18 C -0.20 -5.52 9.65 22.35 0.22 -5.31 16 19 C -0.08 -1.84 10.04 22.21 0.22 -1.61 16 20 C -0.22 -4.84 9.89 22.35 0.22 -4.62 16 21 C 0.22 5.05 6.73 38.28 0.26 5.31 16 22 N -0.87 -13.88 8.97 -51.20 -0.46 -14.34 16 23 C -0.20 -5.50 5.17 -19.74 -0.10 -5.60 16 24 C 0.10 2.49 4.74 85.58 0.41 2.90 16 25 H 0.04 1.64 6.95 -2.38 -0.02 1.62 16 26 H 0.07 2.24 7.24 -2.39 -0.02 2.22 16 27 H 0.03 1.38 8.14 -2.38 -0.02 1.36 16 28 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 29 H -0.02 -1.25 8.14 -2.38 -0.02 -1.27 16 30 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 31 H 0.06 2.25 8.14 -2.38 -0.02 2.23 16 32 H 0.02 0.69 6.04 -2.39 -0.01 0.67 16 33 H 0.08 2.35 6.06 -2.39 -0.01 2.34 16 34 H 0.09 2.07 8.05 -2.39 -0.02 2.05 16 35 H 0.06 2.27 5.70 -2.39 -0.01 2.25 16 36 H 0.09 2.30 8.14 -2.38 -0.02 2.28 16 37 H 0.12 3.06 8.06 -2.91 -0.02 3.03 16 38 H 0.14 2.57 8.06 -2.91 -0.02 2.55 16 39 H 0.14 2.35 8.06 -2.91 -0.02 2.33 16 40 H 0.40 5.60 6.94 -92.71 -0.64 4.96 16 41 H 0.41 4.62 8.84 -92.71 -0.82 3.80 16 42 H 0.10 1.99 8.14 -2.38 -0.02 1.98 16 43 H 0.08 1.83 6.99 -2.39 -0.02 1.82 16 Total: -1.00 -67.56 327.67 0.72 -66.84 By element: Atomic # 1 Polarization: 21.42 SS G_CDS: -0.44 Total: 20.98 kcal Atomic # 6 Polarization: -46.68 SS G_CDS: 3.48 Total: -43.20 kcal Atomic # 7 Polarization: -87.22 SS G_CDS: -4.34 Total: -91.56 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Total: -67.56 0.72 -66.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001575941133.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.602 kcal (2) G-P(sol) polarization free energy of solvation -67.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds