Wall clock time and date at job start Mon Mar 30 2020 01:52:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 S 1.65596 * 120.00282 * 2 1 4 4 O 1.42104 * 106.40423 * 311.06441 * 3 2 1 5 5 O 1.42099 * 106.40434 * 178.13913 * 3 2 1 6 6 C 1.76205 * 107.21630 * 64.60226 * 3 2 1 7 7 C 1.38640 * 119.75455 * 243.95933 * 6 3 2 8 8 C 1.37605 * 120.26178 * 180.29392 * 7 6 3 9 9 C 1.40743 * 119.76975 * 359.73283 * 8 7 6 10 10 C 1.41399 * 120.23644 * 180.02562 * 9 8 7 11 11 H 1.07999 * 120.00010 * 28.43039 * 10 9 8 12 12 C 1.39939 * 119.99499 * 208.43552 * 10 9 8 13 13 N 1.30821 * 120.00621 * 11.54620 * 12 10 9 14 14 Si 1.86809 * 119.99747 * 191.54615 * 12 10 9 15 15 H 1.48499 * 109.46871 * 89.99984 * 14 12 10 16 16 H 1.48500 * 109.46776 * 209.99978 * 14 12 10 17 17 H 1.48493 * 109.46703 * 329.99920 * 14 12 10 18 18 C 1.40679 * 119.52361 * 359.97438 * 9 8 7 19 19 C 1.37751 * 119.73395 * 0.02562 * 18 9 8 20 20 Cl 1.73598 * 119.88989 * 179.97438 * 19 18 9 21 21 H 1.09003 * 109.47221 * 175.09839 * 1 2 3 22 22 H 1.09003 * 109.47171 * 295.09795 * 1 2 3 23 23 H 1.09004 * 109.47421 * 55.09234 * 1 2 3 24 24 H 0.97001 * 119.99933 * 179.97438 * 2 1 3 25 25 H 1.07998 * 119.87450 * 0.02562 * 7 6 3 26 26 H 1.07992 * 120.11821 * 179.70172 * 8 7 6 27 27 H 0.97005 * 120.00705 * 179.97438 * 13 12 10 28 28 H 1.07998 * 120.13061 * 180.02562 * 18 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2930 1.4341 0.0000 4 8 1.7182 2.2294 -1.0278 5 8 3.6736 1.1003 0.0443 6 6 1.9287 2.2467 1.5204 7 6 1.2509 3.4560 1.5090 8 6 0.9662 4.1026 2.6899 9 6 1.3608 3.5293 3.9132 10 6 1.0729 4.1850 5.1325 11 1 0.2097 4.8296 5.2083 12 6 1.9066 3.9985 6.2409 13 7 3.0652 3.4085 6.0962 14 14 1.3650 4.5922 7.9273 15 1 0.6201 3.5089 8.6177 16 1 2.5592 4.9609 8.7293 17 1 0.4853 5.7788 7.7752 18 6 2.0426 2.2988 3.9142 19 6 2.3172 1.6689 2.7203 20 17 3.1590 0.1507 2.7168 21 1 -0.3634 -1.0239 -0.0878 22 1 -0.3634 0.4359 0.9307 23 1 -0.3634 0.5881 -0.8428 24 1 1.9500 -0.8401 0.0004 25 1 0.9488 3.8946 0.5694 26 1 0.4424 5.0469 2.6780 27 1 3.6432 3.2796 6.8645 28 1 2.3495 1.8499 4.8473 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001659372239.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:39 Heat of formation + Delta-G solvation = -93.023520 kcal Electronic energy + Delta-G solvation = -17129.078947 eV Core-core repulsion = 14103.392114 eV Total energy + Delta-G solvation = -3025.686833 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 275.017 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.61053 -38.14924 -37.34371 -36.76261 -35.79220 -35.73985 -32.05786 -31.23640 -27.75485 -26.73898 -23.50788 -23.07505 -20.42802 -19.56417 -18.73086 -18.28901 -17.46715 -17.02737 -16.19079 -15.91234 -15.44130 -15.06458 -14.63772 -14.47071 -14.26697 -13.93413 -13.64467 -13.32861 -13.06154 -13.03618 -12.91166 -12.75175 -12.44737 -12.29557 -12.05414 -11.98533 -11.83187 -11.38047 -11.24504 -10.37710 -9.84689 -9.49703 -8.87302 -6.73526 -0.31177 0.29500 0.84541 1.23625 1.37605 1.43201 1.53168 2.10886 2.24513 2.48715 2.89269 3.36514 3.67436 4.23045 4.34970 4.65037 4.73814 4.81595 4.91792 5.01347 5.02284 5.08671 5.23905 5.40663 5.53967 5.81500 6.01329 6.21741 6.33061 6.59768 6.63943 8.06051 Molecular weight = 275.02amu Principal moments of inertia in cm(-1) A = 0.031112 B = 0.006191 C = 0.005715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.765469 B = 4521.454065 C = 4898.607214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -1.113 6.113 3 S 2.721 3.279 4 O -0.998 6.998 5 O -0.994 6.994 6 C -0.800 4.800 7 C 0.003 3.997 8 C -0.245 4.245 9 C 0.116 3.884 10 C -0.453 4.453 11 H 0.101 0.899 12 C 0.031 3.969 13 N -0.801 5.801 14 Si 0.996 3.004 15 H -0.258 1.258 16 H -0.268 1.268 17 H -0.251 1.251 18 C -0.187 4.187 19 C 0.067 3.933 20 Cl -0.085 7.085 21 H 0.112 0.888 22 H 0.052 0.948 23 H 0.068 0.932 24 H 0.423 0.577 25 H 0.137 0.863 26 H 0.123 0.877 27 H 0.299 0.701 28 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.196 -5.037 -2.452 7.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.874 5.874 3 S 2.813 3.187 4 O -0.988 6.988 5 O -0.985 6.985 6 C -0.892 4.892 7 C -0.016 4.016 8 C -0.265 4.265 9 C 0.112 3.888 10 C -0.479 4.479 11 H 0.119 0.881 12 C -0.188 4.188 13 N -0.424 5.424 14 Si 0.815 3.185 15 H -0.183 1.183 16 H -0.193 1.193 17 H -0.174 1.174 18 C -0.208 4.208 19 C 0.039 3.961 20 Cl -0.056 7.056 21 H 0.130 0.870 22 H 0.071 0.929 23 H 0.086 0.914 24 H 0.258 0.742 25 H 0.155 0.845 26 H 0.141 0.859 27 H 0.111 0.889 28 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -4.477 -4.794 -3.022 7.222 hybrid contribution 0.138 -0.154 1.470 1.485 sum -4.339 -4.947 -1.552 6.761 Atomic orbital electron populations 1.21635 0.77293 1.05718 1.01825 1.55041 1.16892 1.23425 1.92053 1.00524 0.72275 0.72683 0.73197 1.93452 1.79544 1.69982 1.55853 1.93514 1.33077 1.83953 1.87925 1.29575 1.29490 1.13704 1.16454 1.20501 0.91437 0.91138 0.98569 1.21385 1.11236 1.01972 0.91957 1.18126 0.87279 0.89635 0.93797 1.20282 1.09865 1.23212 0.94567 0.88083 1.27069 0.93346 0.92929 1.05482 1.69827 1.07825 1.29550 1.35186 0.84968 0.79125 0.79862 0.74540 1.18254 1.19266 1.17398 1.21306 1.07092 0.96719 0.95637 1.20207 0.94763 0.86585 0.94593 1.98304 1.76944 1.31574 1.98760 0.86962 0.92891 0.91375 0.74164 0.84512 0.85874 0.88949 0.86041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.85 11.17 127.77 1.43 3.27 15 2 N -1.11 -31.38 5.85 -206.53 -1.21 -32.59 15 3 S 2.72 103.45 5.04 -56.49 -0.28 103.16 15 4 O -1.00 -40.48 16.59 -128.00 -2.12 -42.61 15 5 O -0.99 -42.70 16.57 -128.00 -2.12 -44.82 15 6 C -0.80 -34.69 5.89 22.48 0.13 -34.56 15 7 C 0.00 0.15 9.52 22.22 0.21 0.36 15 8 C -0.25 -11.09 9.80 22.73 0.22 -10.86 15 9 C 0.12 5.72 5.55 -21.29 -0.12 5.61 15 10 C -0.45 -21.38 9.06 23.46 0.21 -21.17 15 11 H 0.10 4.41 7.87 -2.91 -0.02 4.38 15 12 C 0.03 1.37 5.24 85.26 0.45 1.82 15 13 N -0.80 -38.09 10.86 21.82 0.24 -37.85 15 14 Si 1.00 33.19 29.58 68.60 2.03 35.22 15 15 H -0.26 -8.35 7.11 99.48 0.71 -7.64 15 16 H -0.27 -8.67 7.11 99.48 0.71 -7.96 15 17 H -0.25 -8.01 7.11 99.48 0.71 -7.30 15 18 C -0.19 -9.29 8.44 22.75 0.19 -9.09 15 19 C 0.07 3.07 6.29 22.27 0.14 3.21 15 20 Cl -0.08 -3.41 26.39 -2.72 -0.07 -3.48 15 21 H 0.11 1.70 8.14 -2.39 -0.02 1.68 15 22 H 0.05 1.30 8.14 -2.39 -0.02 1.28 15 23 H 0.07 1.51 7.99 -2.39 -0.02 1.49 15 24 H 0.42 10.04 8.96 -96.75 -0.87 9.17 15 25 H 0.14 5.24 7.31 -2.91 -0.02 5.21 15 26 H 0.12 4.99 8.06 -2.91 -0.02 4.97 15 27 H 0.30 12.75 8.30 -92.70 -0.77 11.98 15 28 H 0.12 6.26 6.23 -2.91 -0.02 6.24 15 Total: -1.00 -60.54 274.16 -0.34 -60.87 By element: Atomic # 1 Polarization: 23.17 SS G_CDS: 0.34 Total: 23.51 kcal Atomic # 6 Polarization: -64.29 SS G_CDS: 2.87 Total: -61.42 kcal Atomic # 7 Polarization: -69.47 SS G_CDS: -0.97 Total: -70.44 kcal Atomic # 8 Polarization: -83.18 SS G_CDS: -4.24 Total: -87.42 kcal Atomic # 14 Polarization: 33.19 SS G_CDS: 2.03 Total: 35.22 kcal Atomic # 16 Polarization: 103.45 SS G_CDS: -0.28 Total: 103.16 kcal Atomic # 17 Polarization: -3.41 SS G_CDS: -0.07 Total: -3.48 kcal Total: -60.54 -0.34 -60.87 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001659372239.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.149 kcal (2) G-P(sol) polarization free energy of solvation -60.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds