Wall clock time and date at job start Mon Mar 30 2020 01:09:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30744 * 1 3 3 Si 1.86794 * 120.00483 * 2 1 4 4 H 1.48496 * 109.47341 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99736 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99549 * 3 2 1 7 7 C 1.40037 * 119.99612 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99630 * 179.97438 * 7 2 1 9 9 C 1.41435 * 119.99820 * 0.27902 * 7 2 1 10 10 C 1.40453 * 119.77320 * 179.45025 * 9 7 2 11 11 C 1.39363 * 118.82744 * 179.73356 * 10 9 7 12 12 C 1.48292 * 120.82402 * 180.25613 * 11 10 9 13 13 C 1.39357 * 120.14734 * 310.00393 * 12 11 10 14 14 C 1.37973 * 119.95425 * 179.70029 * 13 12 11 15 15 C 1.38406 * 120.24770 * 0.59922 * 14 13 12 16 16 C 1.38244 * 120.30065 * 359.67621 * 15 14 13 17 17 Cl 1.73605 * 119.98098 * 180.02562 * 16 15 14 18 18 C 1.38715 * 120.04420 * 0.02562 * 16 15 14 19 19 O 1.35840 * 120.12819 * 180.02562 * 18 16 15 20 20 C 1.40083 * 118.34869 * 0.52797 * 11 10 9 21 21 C 1.38467 * 119.41889 * 359.73324 * 20 11 10 22 22 N 1.31498 * 121.15341 * 359.97438 * 21 20 11 23 23 H 0.97000 * 119.99125 * 0.02562 * 1 2 3 24 24 H 1.07998 * 120.58177 * 359.97438 * 10 9 7 25 25 H 1.08001 * 120.02138 * 359.97438 * 13 12 11 26 26 H 1.07990 * 119.87513 * 180.29788 * 14 13 12 27 27 H 1.07999 * 119.84926 * 179.69910 * 15 14 13 28 28 H 0.96697 * 114.00641 * 269.97747 * 19 18 16 29 29 H 1.07999 * 120.28728 * 179.70798 * 20 11 10 30 30 H 1.08007 * 119.42354 * 180.02562 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6176 0.0000 4 1 3.7015 1.3462 -0.0006 5 1 1.8829 2.3963 -1.2126 6 1 1.8828 2.3965 1.2124 7 6 2.0075 -1.2128 0.0005 8 1 3.0876 -1.2128 0.0001 9 6 1.3003 -2.4376 -0.0049 10 6 2.0072 -3.6512 -0.0160 11 6 1.2905 -4.8464 -0.0155 12 6 1.9919 -6.1530 -0.0213 13 6 3.0015 -6.4012 -0.9493 14 6 3.6556 -7.6160 -0.9471 15 6 3.3047 -8.5952 -0.0341 16 6 2.3008 -8.3622 0.8874 17 17 1.8678 -9.5961 2.0293 18 6 1.6392 -7.1430 0.9002 19 8 0.6529 -6.9120 1.8052 20 6 -0.1089 -4.7828 -0.0152 21 6 -0.7336 -3.5471 -0.0099 22 7 -0.0362 -2.4323 -0.0045 23 1 -0.4849 0.8401 -0.0004 24 1 3.0872 -3.6579 -0.0209 25 1 3.2747 -5.6416 -1.6667 26 1 4.4411 -7.8053 -1.6636 27 1 3.8177 -9.5456 -0.0413 28 1 -0.2292 -7.1625 1.4983 29 1 -0.6953 -5.6897 -0.0196 30 1 -1.8125 -3.4980 -0.0092 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242365708.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:44 Heat of formation + Delta-G solvation = -12.612086 kcal Electronic energy + Delta-G solvation = -17778.781468 eV Core-core repulsion = 14756.970680 eV Total energy + Delta-G solvation = -3021.810789 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 275.045 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.09904 -39.65841 -37.69800 -37.44390 -35.56318 -33.79789 -31.91628 -30.91774 -30.05205 -27.62757 -24.78170 -23.75030 -22.96308 -22.23936 -19.65363 -19.04614 -17.68224 -17.28122 -16.83994 -16.45458 -16.16560 -15.88814 -15.60973 -15.20758 -14.45046 -14.19075 -14.03652 -13.88723 -13.20846 -13.13163 -12.89458 -12.76445 -12.73801 -12.47259 -12.17775 -12.02046 -11.74991 -11.47307 -11.24562 -10.44360 -9.64357 -9.60501 -9.51448 -9.34011 -8.30137 -6.53262 -0.04331 0.08629 0.88918 1.03719 1.21481 1.40551 1.52647 1.56033 2.22687 2.52686 2.85184 3.14148 3.63891 3.88159 4.03982 4.19589 4.22860 4.29412 4.59262 4.63935 4.70428 4.83474 4.95853 5.07086 5.18620 5.26245 5.40155 5.47121 5.56383 5.72997 5.82584 6.11065 6.26681 6.70061 6.72058 6.94123 8.17988 8.44907 Molecular weight = 275.05amu Principal moments of inertia in cm(-1) A = 0.033036 B = 0.004300 C = 0.004038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.369178 B = 6509.771910 C = 6932.039243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.757 5.757 2 C 0.024 3.976 3 Si 0.987 3.013 4 H -0.254 1.254 5 H -0.264 1.264 6 H -0.267 1.267 7 C -0.471 4.471 8 H 0.087 0.913 9 C 0.225 3.775 10 C -0.273 4.273 11 C 0.011 3.989 12 C -0.067 4.067 13 C -0.097 4.097 14 C -0.104 4.104 15 C -0.096 4.096 16 C -0.071 4.071 17 Cl -0.058 7.058 18 C 0.115 3.885 19 O -0.493 6.493 20 C -0.285 4.285 21 C 0.105 3.895 22 N -0.520 5.520 23 H 0.279 0.721 24 H 0.105 0.895 25 H 0.133 0.867 26 H 0.172 0.828 27 H 0.167 0.833 28 H 0.401 0.599 29 H 0.124 0.876 30 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.875 -14.278 -1.631 15.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.379 5.379 2 C -0.197 4.197 3 Si 0.807 3.193 4 H -0.177 1.177 5 H -0.189 1.189 6 H -0.192 1.192 7 C -0.502 4.502 8 H 0.106 0.894 9 C 0.100 3.900 10 C -0.295 4.295 11 C 0.005 3.995 12 C -0.067 4.067 13 C -0.115 4.115 14 C -0.122 4.122 15 C -0.114 4.114 16 C -0.098 4.098 17 Cl -0.029 7.029 18 C 0.069 3.931 19 O -0.305 6.305 20 C -0.308 4.308 21 C -0.059 4.059 22 N -0.234 5.234 23 H 0.090 0.910 24 H 0.123 0.877 25 H 0.151 0.849 26 H 0.190 0.810 27 H 0.184 0.816 28 H 0.260 0.740 29 H 0.142 0.858 30 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 4.676 -13.235 -1.166 14.085 hybrid contribution -0.117 -0.157 0.006 0.196 sum 4.559 -13.391 -1.160 14.194 Atomic orbital electron populations 1.70240 1.08900 1.29038 1.29738 1.26991 0.95733 1.04539 0.92445 0.85089 0.79388 0.75948 0.78851 1.17737 1.18907 1.19160 1.20010 0.94710 0.90466 1.44999 0.89446 1.18959 0.88864 0.93024 0.89183 1.21894 0.98804 0.92705 1.16134 1.18686 0.93427 0.91021 0.96368 1.19309 0.98272 0.92992 0.96164 1.21484 0.94037 0.98543 0.97481 1.21405 1.00093 0.91493 0.99167 1.21366 0.95248 1.01510 0.93277 1.21401 1.01845 0.89758 0.96831 1.98351 1.92670 1.52204 1.59658 1.18282 0.93364 0.90889 0.90591 1.84792 1.18813 1.86981 1.39898 1.21478 0.93420 0.98153 1.17707 1.22903 0.99882 0.88930 0.94194 1.68661 1.07737 1.28666 1.18314 0.91050 0.87714 0.84894 0.81038 0.81579 0.73988 0.85850 0.84269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -41.51 11.46 21.84 0.25 -41.26 16 2 C 0.02 1.26 5.50 85.29 0.47 1.73 16 3 Si 0.99 38.53 29.56 68.60 2.03 40.56 16 4 H -0.25 -9.51 7.11 99.48 0.71 -8.81 16 5 H -0.26 -9.86 7.11 99.48 0.71 -9.15 16 6 H -0.27 -10.06 7.11 99.48 0.71 -9.35 16 7 C -0.47 -26.03 9.14 23.49 0.21 -25.81 16 8 H 0.09 4.53 7.85 -2.91 -0.02 4.51 16 9 C 0.22 12.70 6.55 40.19 0.26 12.96 16 10 C -0.27 -13.64 9.37 23.08 0.22 -13.43 16 11 C 0.01 0.50 5.29 -19.88 -0.11 0.40 16 12 C -0.07 -2.35 5.52 -19.96 -0.11 -2.46 16 13 C -0.10 -2.80 9.54 22.48 0.21 -2.59 16 14 C -0.10 -2.16 10.03 22.25 0.22 -1.94 16 15 C -0.10 -1.98 9.81 22.31 0.22 -1.76 16 16 C -0.07 -1.86 6.33 22.39 0.14 -1.72 16 17 Cl -0.06 -1.36 28.50 -2.72 -0.08 -1.43 16 18 C 0.11 3.66 6.63 22.76 0.15 3.81 16 19 O -0.49 -15.91 11.60 -91.75 -1.06 -16.97 16 20 C -0.28 -12.23 8.91 22.77 0.20 -12.02 16 21 C 0.10 5.07 11.17 84.80 0.95 6.02 16 22 N -0.52 -29.52 7.85 -189.39 -1.49 -31.01 16 23 H 0.28 13.74 8.29 -92.71 -0.77 12.97 16 24 H 0.10 4.94 8.06 -2.91 -0.02 4.92 16 25 H 0.13 3.79 8.05 -2.91 -0.02 3.77 16 26 H 0.17 2.23 8.06 -2.92 -0.02 2.21 16 27 H 0.17 2.33 8.06 -2.91 -0.02 2.31 16 28 H 0.40 9.76 8.30 -74.06 -0.61 9.14 16 29 H 0.12 4.35 7.20 -2.91 -0.02 4.33 16 30 H 0.14 5.91 8.06 -2.91 -0.02 5.89 16 Total: -1.00 -67.47 286.00 3.27 -64.20 By element: Atomic # 1 Polarization: 22.16 SS G_CDS: 0.58 Total: 22.74 kcal Atomic # 6 Polarization: -39.86 SS G_CDS: 3.05 Total: -36.82 kcal Atomic # 7 Polarization: -71.04 SS G_CDS: -1.24 Total: -72.27 kcal Atomic # 8 Polarization: -15.91 SS G_CDS: -1.06 Total: -16.97 kcal Atomic # 14 Polarization: 38.53 SS G_CDS: 2.03 Total: 40.56 kcal Atomic # 17 Polarization: -1.36 SS G_CDS: -0.08 Total: -1.43 kcal Total: -67.47 3.27 -64.20 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242365708.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.590 kcal (2) G-P(sol) polarization free energy of solvation -67.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds