Wall clock time and date at job start Mon Mar 30 2020 01:12:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30636 * 1 3 3 Si 1.86793 * 119.99678 * 2 1 4 4 H 1.48496 * 109.47493 * 239.99887 * 3 2 1 5 5 H 1.48500 * 109.47306 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46937 * 120.00250 * 3 2 1 7 7 C 1.40317 * 119.99988 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99894 * 177.32547 * 7 2 1 9 9 C 1.40510 * 120.00207 * 357.32760 * 7 2 1 10 10 C 1.44194 * 123.71982 * 26.73371 * 9 7 2 11 11 C 1.32760 * 114.43590 * 180.28734 * 10 9 7 12 12 S 1.75473 * 111.36651 * 359.75115 * 11 10 9 13 13 C 1.39585 * 123.72203 * 206.55859 * 9 7 2 14 14 C 1.46167 * 125.22893 * 0.02562 * 13 9 7 15 15 O 1.21765 * 119.99720 * 359.71969 * 14 13 9 16 16 N 1.34779 * 119.99932 * 179.71536 * 14 13 9 17 17 C 1.39265 * 119.99591 * 184.93795 * 16 14 13 18 18 C 1.39451 * 120.14870 * 174.27431 * 17 16 14 19 19 C 1.38597 * 117.90242 * 180.26424 * 18 17 16 20 20 C 1.38790 * 118.04349 * 359.51377 * 19 18 17 21 21 N 1.31825 * 120.00040 * 0.25099 * 20 19 18 22 22 N 1.28353 * 122.28413 * 0.02562 * 21 20 19 23 23 H 0.97004 * 120.00273 * 359.97438 * 1 2 3 24 24 H 1.08002 * 122.78306 * 359.97438 * 10 9 7 25 25 H 1.07995 * 124.31516 * 179.79087 * 11 10 9 26 26 H 0.96997 * 120.00166 * 4.94826 * 16 14 13 27 27 H 1.07996 * 121.04469 * 0.04741 * 18 17 16 28 28 H 1.08011 * 120.97694 * 179.78791 * 19 18 17 29 29 H 1.07994 * 120.00188 * 180.27636 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2402 1.6177 0.0000 4 1 3.0940 1.6965 -1.2124 5 1 1.2752 2.7464 0.0006 6 1 3.0940 1.6964 1.2125 7 6 2.0079 -1.2152 -0.0005 8 1 3.0870 -1.2157 -0.0442 9 6 1.3066 -2.4314 0.0556 10 6 -0.0419 -2.6008 -0.4261 11 6 -0.5286 -3.8269 -0.2765 12 16 0.6459 -4.8940 0.4725 13 6 1.8396 -3.6098 0.5807 14 6 3.1823 -3.7517 1.1408 15 8 3.9343 -2.7945 1.1690 16 7 3.5877 -4.9420 1.6259 17 6 4.8267 -5.0530 2.2522 18 6 5.1992 -6.2515 2.8601 19 6 6.4402 -6.3087 3.4746 20 6 7.2392 -5.1745 3.4382 21 7 6.8086 -4.0838 2.8358 22 7 5.6584 -4.0222 2.2695 23 1 -0.4851 0.8401 0.0004 24 1 -0.6108 -1.7957 -0.8672 25 1 -1.5206 -4.1291 -0.5779 26 1 3.0167 -5.7212 1.5387 27 1 4.5399 -7.1068 2.8554 28 1 6.7774 -7.2109 3.9634 29 1 8.2140 -5.1855 3.9030 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001522679759.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:15 Heat of formation + Delta-G solvation = 57.893707 kcal Electronic energy + Delta-G solvation = -17888.492211 eV Core-core repulsion = 14904.075241 eV Total energy + Delta-G solvation = -2984.416971 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 275.047 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.76865 -38.40989 -36.20913 -34.38848 -33.13308 -32.79708 -30.71317 -28.99154 -26.46635 -24.51724 -23.83456 -22.15750 -20.40042 -18.89826 -18.22707 -17.22755 -16.55763 -16.32457 -15.68588 -15.35119 -14.99940 -14.22211 -13.87723 -13.67542 -13.46684 -13.02025 -12.47319 -12.24721 -11.95340 -11.58050 -11.29057 -11.13402 -10.89562 -10.65728 -10.51113 -10.24571 -10.05410 -9.63712 -9.42003 -9.27880 -8.41612 -8.22742 -7.58303 -7.22419 -7.09047 -4.65280 1.04789 1.28083 2.07193 2.98369 2.99972 3.01150 3.06215 3.39350 3.52746 3.69571 3.82000 3.91797 4.40968 4.51616 4.80689 4.82762 5.00148 5.15019 5.22753 5.75732 5.94711 6.01522 6.24486 6.46338 6.74313 7.01350 7.12275 7.13045 7.38230 7.58809 8.04343 8.29172 8.47923 8.61269 9.15307 9.40637 9.78710 Molecular weight = 275.05amu Principal moments of inertia in cm(-1) A = 0.018317 B = 0.006269 C = 0.004714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.242220 B = 4465.611742 C = 5937.857339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.779 5.779 2 C 0.067 3.933 3 Si 0.931 3.069 4 H -0.258 1.258 5 H -0.276 1.276 6 H -0.256 1.256 7 C -0.368 4.368 8 H 0.111 0.889 9 C 0.141 3.859 10 C -0.099 4.099 11 C -0.201 4.201 12 S -0.059 6.059 13 C -0.429 4.429 14 C 0.581 3.419 15 O -0.492 6.492 16 N -0.660 5.660 17 C 0.320 3.680 18 C -0.170 4.170 19 C -0.093 4.093 20 C -0.018 4.018 21 N -0.214 5.214 22 N -0.231 5.231 23 H 0.290 0.710 24 H 0.156 0.844 25 H 0.139 0.861 26 H 0.409 0.591 27 H 0.146 0.854 28 H 0.146 0.854 29 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.379 -9.045 3.318 10.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.403 5.403 2 C -0.155 4.155 3 Si 0.754 3.246 4 H -0.182 1.182 5 H -0.201 1.201 6 H -0.180 1.180 7 C -0.398 4.398 8 H 0.129 0.871 9 C 0.129 3.871 10 C -0.131 4.131 11 C -0.334 4.334 12 S 0.196 5.804 13 C -0.548 4.548 14 C 0.378 3.622 15 O -0.367 6.367 16 N -0.305 5.305 17 C 0.082 3.918 18 C -0.203 4.203 19 C -0.122 4.122 20 C -0.185 4.185 21 N -0.057 5.057 22 N -0.082 5.082 23 H 0.101 0.899 24 H 0.173 0.827 25 H 0.157 0.843 26 H 0.245 0.755 27 H 0.163 0.837 28 H 0.164 0.836 29 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 3.818 -8.044 3.222 9.470 hybrid contribution -0.544 -0.072 0.119 0.561 sum 3.274 -8.117 3.341 9.368 Atomic orbital electron populations 1.69583 1.08109 1.30621 1.32002 1.26423 0.95031 1.02832 0.91206 0.85951 0.79814 0.77782 0.81083 1.18201 1.20092 1.17960 1.20050 0.97019 0.88667 1.34113 0.87116 1.17954 0.90077 0.91658 0.87367 1.21963 0.96031 0.95647 0.99474 1.24969 1.01960 0.97821 1.08696 1.82652 1.09377 1.17469 1.70935 1.22433 0.98706 0.98695 1.34972 1.17128 0.86367 0.80944 0.77756 1.90826 1.54043 1.36750 1.55067 1.43904 1.15042 1.14081 1.57513 1.20429 0.88687 0.91676 0.91039 1.21878 0.98844 0.98319 1.01256 1.22125 0.93401 0.99832 0.96814 1.24119 1.01879 0.91247 1.01239 1.73099 1.06561 1.22883 1.03121 1.73842 0.97571 1.22626 1.14114 0.89861 0.82708 0.84295 0.75515 0.83665 0.83623 0.81797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.41 10.57 55.57 0.59 -17.83 15 2 C 0.07 1.62 5.47 -17.28 -0.09 1.53 15 3 Si 0.93 18.78 29.56 -169.99 -5.03 13.75 15 4 H -0.26 -5.14 7.11 56.52 0.40 -4.74 15 5 H -0.28 -5.22 7.11 56.52 0.40 -4.81 15 6 H -0.26 -5.38 7.11 56.52 0.40 -4.98 15 7 C -0.37 -9.83 8.45 -37.94 -0.32 -10.15 15 8 H 0.11 3.12 6.15 -52.49 -0.32 2.79 15 9 C 0.14 3.69 5.70 -106.20 -0.60 3.08 15 10 C -0.10 -2.35 9.08 -39.12 -0.36 -2.71 15 11 C -0.20 -4.21 11.07 28.86 0.32 -3.89 15 12 S -0.06 -1.20 22.26 -107.50 -2.39 -3.60 15 13 C -0.43 -10.66 6.50 -35.90 -0.23 -10.89 15 14 C 0.58 14.35 7.72 -13.08 -0.10 14.25 15 15 O -0.49 -13.78 12.79 5.13 0.07 -13.71 15 16 N -0.66 -13.09 5.38 -12.65 -0.07 -13.16 15 17 C 0.32 6.03 7.50 -154.59 -1.16 4.87 15 18 C -0.17 -2.27 10.07 -39.00 -0.39 -2.66 15 19 C -0.09 -1.04 10.20 -39.25 -0.40 -1.44 15 20 C -0.02 -0.24 11.31 -17.35 -0.20 -0.43 15 21 N -0.21 -4.05 11.49 30.57 0.35 -3.70 15 22 N -0.23 -5.06 9.08 31.27 0.28 -4.77 15 23 H 0.29 6.16 8.29 -40.82 -0.34 5.82 15 24 H 0.16 3.65 6.17 -52.49 -0.32 3.33 15 25 H 0.14 2.45 8.06 -52.49 -0.42 2.02 15 26 H 0.41 6.81 7.80 -40.82 -0.32 6.49 15 27 H 0.15 1.42 8.06 -52.49 -0.42 0.99 15 28 H 0.15 0.99 8.06 -52.48 -0.42 0.56 15 29 H 0.16 1.53 8.06 -52.49 -0.42 1.11 15 LS Contribution 276.16 15.07 4.16 4.16 Total: -1.00 -31.34 276.16 -7.37 -38.71 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: -1.79 Total: 8.60 kcal Atomic # 6 Polarization: -4.91 SS G_CDS: -3.54 Total: -8.45 kcal Atomic # 7 Polarization: -40.61 SS G_CDS: 1.15 Total: -39.46 kcal Atomic # 8 Polarization: -13.78 SS G_CDS: 0.07 Total: -13.71 kcal Atomic # 14 Polarization: 18.78 SS G_CDS: -5.03 Total: 13.75 kcal Atomic # 16 Polarization: -1.20 SS G_CDS: -2.39 Total: -3.60 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -31.34 -7.37 -38.71 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001522679759.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.599 kcal (2) G-P(sol) polarization free energy of solvation -31.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.705 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds