Wall clock time and date at job start Mon Mar 30 2020 01:12:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30636 * 1 3 3 Si 1.86793 * 119.99678 * 2 1 4 4 H 1.48496 * 109.47493 * 239.99887 * 3 2 1 5 5 H 1.48500 * 109.47306 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46937 * 120.00250 * 3 2 1 7 7 C 1.40317 * 119.99988 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99894 * 177.32547 * 7 2 1 9 9 C 1.40510 * 120.00207 * 357.32760 * 7 2 1 10 10 C 1.44194 * 123.71982 * 26.73371 * 9 7 2 11 11 C 1.32760 * 114.43590 * 180.28734 * 10 9 7 12 12 S 1.75473 * 111.36651 * 359.75115 * 11 10 9 13 13 C 1.39585 * 123.72203 * 206.55859 * 9 7 2 14 14 C 1.46167 * 125.22893 * 0.02562 * 13 9 7 15 15 O 1.21765 * 119.99720 * 359.71969 * 14 13 9 16 16 N 1.34779 * 119.99932 * 179.71536 * 14 13 9 17 17 C 1.39265 * 119.99591 * 184.93795 * 16 14 13 18 18 C 1.39451 * 120.14870 * 174.27431 * 17 16 14 19 19 C 1.38597 * 117.90242 * 180.26424 * 18 17 16 20 20 C 1.38790 * 118.04349 * 359.51377 * 19 18 17 21 21 N 1.31825 * 120.00040 * 0.25099 * 20 19 18 22 22 N 1.28353 * 122.28413 * 0.02562 * 21 20 19 23 23 H 0.97004 * 120.00273 * 359.97438 * 1 2 3 24 24 H 1.08002 * 122.78306 * 359.97438 * 10 9 7 25 25 H 1.07995 * 124.31516 * 179.79087 * 11 10 9 26 26 H 0.96997 * 120.00166 * 4.94826 * 16 14 13 27 27 H 1.07996 * 121.04469 * 0.04741 * 18 17 16 28 28 H 1.08011 * 120.97694 * 179.78791 * 19 18 17 29 29 H 1.07994 * 120.00188 * 180.27636 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2402 1.6177 0.0000 4 1 3.0940 1.6965 -1.2124 5 1 1.2752 2.7464 0.0006 6 1 3.0940 1.6964 1.2125 7 6 2.0079 -1.2152 -0.0005 8 1 3.0870 -1.2157 -0.0442 9 6 1.3066 -2.4314 0.0556 10 6 -0.0419 -2.6008 -0.4261 11 6 -0.5286 -3.8269 -0.2765 12 16 0.6459 -4.8940 0.4725 13 6 1.8396 -3.6098 0.5807 14 6 3.1823 -3.7517 1.1408 15 8 3.9343 -2.7945 1.1690 16 7 3.5877 -4.9420 1.6259 17 6 4.8267 -5.0530 2.2522 18 6 5.1992 -6.2515 2.8601 19 6 6.4402 -6.3087 3.4746 20 6 7.2392 -5.1745 3.4382 21 7 6.8086 -4.0838 2.8358 22 7 5.6584 -4.0222 2.2695 23 1 -0.4851 0.8401 0.0004 24 1 -0.6108 -1.7957 -0.8672 25 1 -1.5206 -4.1291 -0.5779 26 1 3.0167 -5.7212 1.5387 27 1 4.5399 -7.1068 2.8554 28 1 6.7774 -7.2109 3.9634 29 1 8.2140 -5.1855 3.9030 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001522679759.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:14 Heat of formation + Delta-G solvation = 36.226154 kcal Electronic energy + Delta-G solvation = -17889.431787 eV Core-core repulsion = 14904.075241 eV Total energy + Delta-G solvation = -2985.356546 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 275.047 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.06308 -40.10871 -37.97495 -36.03127 -34.94455 -33.93669 -32.15471 -30.75280 -28.25424 -25.78153 -25.21434 -23.80803 -22.04935 -20.69274 -19.84734 -18.70757 -17.90890 -17.51295 -17.37201 -17.04761 -16.45470 -15.92713 -15.46233 -15.12930 -14.88263 -14.21846 -14.07219 -13.97058 -13.75639 -13.31359 -13.04159 -12.81873 -12.25715 -12.20851 -12.11641 -12.06025 -11.39464 -11.18217 -11.13300 -10.66385 -10.10923 -9.74762 -9.37888 -8.96650 -8.86302 -6.53463 -0.04155 0.01925 0.36027 1.30948 1.32107 1.35192 1.42276 1.67948 1.95469 1.99418 2.14889 2.40370 2.82762 3.24549 3.35552 3.66075 3.90259 4.01918 4.26522 4.35117 4.60776 4.86593 4.94168 5.02427 5.21635 5.28112 5.36620 5.54097 5.63019 5.79928 6.32908 6.43545 6.59635 6.77097 7.53378 7.99857 8.02762 Molecular weight = 275.05amu Principal moments of inertia in cm(-1) A = 0.018317 B = 0.006269 C = 0.004714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.242220 B = 4465.611742 C = 5937.857339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.790 5.790 2 C 0.038 3.962 3 Si 0.988 3.012 4 H -0.257 1.257 5 H -0.245 1.245 6 H -0.276 1.276 7 C -0.412 4.412 8 H 0.079 0.921 9 C 0.114 3.886 10 C -0.132 4.132 11 C -0.186 4.186 12 S 0.016 5.984 13 C -0.465 4.465 14 C 0.575 3.425 15 O -0.539 6.539 16 N -0.653 5.653 17 C 0.286 3.714 18 C -0.155 4.155 19 C -0.070 4.070 20 C -0.004 4.004 21 N -0.270 5.270 22 N -0.301 5.301 23 H 0.302 0.698 24 H 0.151 0.849 25 H 0.180 0.820 26 H 0.422 0.578 27 H 0.189 0.811 28 H 0.209 0.791 29 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.230 -12.013 4.579 13.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C -0.182 4.182 3 Si 0.808 3.192 4 H -0.181 1.181 5 H -0.168 1.168 6 H -0.201 1.201 7 C -0.443 4.443 8 H 0.097 0.903 9 C 0.102 3.898 10 C -0.164 4.164 11 C -0.320 4.320 12 S 0.271 5.729 13 C -0.584 4.584 14 C 0.372 3.628 15 O -0.418 6.418 16 N -0.300 5.300 17 C 0.046 3.954 18 C -0.187 4.187 19 C -0.099 4.099 20 C -0.172 4.172 21 N -0.110 5.110 22 N -0.149 5.149 23 H 0.114 0.886 24 H 0.168 0.832 25 H 0.198 0.802 26 H 0.261 0.739 27 H 0.206 0.794 28 H 0.226 0.774 29 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 3.670 -11.052 4.492 12.482 hybrid contribution -0.353 0.545 -0.124 0.661 sum 3.317 -10.507 4.368 11.853 Atomic orbital electron populations 1.69558 1.08463 1.31951 1.31530 1.26985 0.95908 1.04629 0.90715 0.85161 0.78923 0.75231 0.79927 1.18143 1.16829 1.20090 1.19974 0.95844 0.90734 1.37740 0.90308 1.18403 0.91659 0.92138 0.87570 1.21819 0.95527 0.97034 1.02016 1.25510 1.03460 0.96875 1.06119 1.82175 1.06670 1.14478 1.69560 1.22932 1.00195 1.00601 1.34641 1.17337 0.86216 0.81818 0.77462 1.90790 1.55367 1.38815 1.56804 1.43406 1.16114 1.12878 1.57627 1.20738 0.88127 0.93601 0.92897 1.22380 1.00180 0.97088 0.99054 1.22818 0.91505 1.00881 0.94647 1.24973 1.03432 0.90480 0.98354 1.72971 1.06251 1.26076 1.05663 1.73620 0.99317 1.25460 1.16529 0.88619 0.83184 0.80229 0.73889 0.79416 0.77428 0.77532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -38.32 10.57 21.89 0.23 -38.09 15 2 C 0.04 1.92 5.47 85.38 0.47 2.38 15 3 Si 0.99 40.20 29.56 68.60 2.03 42.23 15 4 H -0.26 -10.31 7.11 99.48 0.71 -9.60 15 5 H -0.25 -8.67 7.11 99.48 0.71 -7.96 15 6 H -0.28 -11.99 7.11 99.48 0.71 -11.29 15 7 C -0.41 -23.64 8.45 23.33 0.20 -23.44 15 8 H 0.08 4.90 6.15 -2.91 -0.02 4.88 15 9 C 0.11 6.25 5.70 -20.89 -0.12 6.13 15 10 C -0.13 -6.34 9.08 22.61 0.21 -6.14 15 11 C -0.19 -7.48 11.07 66.64 0.74 -6.74 15 12 S 0.02 0.62 22.26 -56.49 -1.26 -0.63 15 13 C -0.47 -23.84 6.50 24.66 0.16 -23.67 15 14 C 0.57 29.90 7.72 86.30 0.67 30.57 15 15 O -0.54 -32.71 12.79 -4.56 -0.06 -32.77 15 16 N -0.65 -26.29 5.38 -312.11 -1.68 -27.97 15 17 C 0.29 10.76 7.50 133.03 1.00 11.76 15 18 C -0.16 -3.61 10.07 22.65 0.23 -3.38 15 19 C -0.07 -1.22 10.20 22.49 0.23 -0.99 15 20 C 0.00 -0.09 11.31 84.83 0.96 0.87 15 21 N -0.27 -10.35 11.49 -57.20 -0.66 -11.01 15 22 N -0.30 -13.79 9.08 -54.99 -0.50 -14.28 15 23 H 0.30 12.90 8.29 -92.71 -0.77 12.13 15 24 H 0.15 7.24 6.17 -2.91 -0.02 7.23 15 25 H 0.18 5.66 8.06 -2.91 -0.02 5.64 15 26 H 0.42 13.69 7.80 -92.71 -0.72 12.97 15 27 H 0.19 2.65 8.06 -2.91 -0.02 2.63 15 28 H 0.21 1.11 8.06 -2.90 -0.02 1.09 15 29 H 0.21 2.94 8.06 -2.91 -0.02 2.91 15 Total: -1.00 -77.89 276.16 3.34 -74.55 By element: Atomic # 1 Polarization: 20.12 SS G_CDS: 0.50 Total: 20.61 kcal Atomic # 6 Polarization: -17.38 SS G_CDS: 4.73 Total: -12.65 kcal Atomic # 7 Polarization: -88.74 SS G_CDS: -2.60 Total: -91.35 kcal Atomic # 8 Polarization: -32.71 SS G_CDS: -0.06 Total: -32.77 kcal Atomic # 14 Polarization: 40.20 SS G_CDS: 2.03 Total: 42.23 kcal Atomic # 16 Polarization: 0.62 SS G_CDS: -1.26 Total: -0.63 kcal Total: -77.89 3.34 -74.55 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001522679759.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.781 kcal (2) G-P(sol) polarization free energy of solvation -77.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.555 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds