Wall clock time and date at job start Mon Mar 30 2020 01:15:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36573 * 127.17231 * 2 1 4 4 S 1.76191 * 126.38289 * 359.97438 * 3 2 1 5 5 C 1.81005 * 100.00127 * 180.29053 * 4 3 2 6 6 C 1.50693 * 109.47279 * 179.97438 * 5 4 3 7 7 H 1.08005 * 119.99948 * 359.97438 * 6 5 4 8 8 C 1.37881 * 120.00074 * 179.97438 * 6 5 4 9 9 N 1.31516 * 120.00139 * 180.02562 * 8 6 5 10 10 Si 1.86796 * 119.99683 * 0.02562 * 8 6 5 11 11 H 1.48501 * 109.47165 * 90.00341 * 10 8 6 12 12 H 1.48509 * 109.47000 * 210.00058 * 10 8 6 13 13 H 1.48499 * 109.47355 * 329.99959 * 10 8 6 14 14 N 1.31443 * 107.22973 * 180.25902 * 3 2 1 15 15 N 1.28505 * 110.08436 * 359.72913 * 14 3 2 16 16 C 1.31263 * 109.96049 * 0.02562 * 15 14 3 17 17 C 1.47841 * 126.46586 * 179.97438 * 16 15 14 18 18 C 1.39580 * 120.14512 * 160.83842 * 17 16 15 19 19 C 1.37950 * 119.85444 * 179.97438 * 18 17 16 20 20 C 1.38366 * 120.14647 * 359.97246 * 19 18 17 21 21 C 1.38361 * 120.28999 * 0.04949 * 20 19 18 22 22 C 1.37957 * 120.14358 * 359.95262 * 21 20 19 23 23 H 1.08992 * 109.47622 * 263.82059 * 1 2 3 24 24 H 1.09003 * 109.46815 * 23.82113 * 1 2 3 25 25 H 1.08998 * 109.46856 * 143.81529 * 1 2 3 26 26 H 1.09001 * 109.46726 * 299.99905 * 5 4 3 27 27 H 1.09000 * 109.46948 * 59.99771 * 5 4 3 28 28 H 0.96991 * 119.99688 * 179.97438 * 9 8 6 29 29 H 1.07997 * 120.07026 * 359.70038 * 18 17 16 30 30 H 1.07997 * 119.92930 * 179.97438 * 19 18 17 31 31 H 1.07999 * 119.85411 * 180.02562 * 20 19 18 32 32 H 1.07999 * 119.92412 * 179.97438 * 21 20 19 33 33 H 1.08001 * 120.07092 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2902 1.0882 0.0000 4 16 1.7914 2.7781 -0.0006 5 6 3.4120 3.5842 -0.0093 6 6 3.2291 5.0800 -0.0117 7 1 2.2351 5.5024 -0.0087 8 6 4.3306 5.9093 -0.0176 9 7 4.1709 7.2147 -0.0192 10 14 6.0497 5.1785 -0.0235 11 1 6.4995 4.9826 -1.4251 12 1 6.9825 6.1020 0.6712 13 1 6.0339 3.8702 0.6788 14 7 3.5258 0.6399 -0.0057 15 7 3.5290 -0.6451 -0.0035 16 6 2.2963 -1.0963 0.0032 17 6 1.8798 -2.5148 0.0070 18 6 0.5904 -2.8656 0.4100 19 6 0.2079 -4.1911 0.4108 20 6 1.0992 -5.1717 0.0128 21 6 2.3790 -4.8308 -0.3874 22 6 2.7741 -3.5090 -0.3928 23 1 -0.3634 -0.1106 1.0216 24 1 -0.3633 0.9402 -0.4151 25 1 -0.3633 -0.8294 -0.6067 26 1 3.9701 3.2874 0.8787 27 1 3.9621 3.2844 -0.9013 28 1 4.9458 7.7980 -0.0230 29 1 -0.1049 -2.1015 0.7247 30 1 -0.7894 -4.4639 0.7228 31 1 0.7946 -6.2079 0.0148 32 1 3.0700 -5.6010 -0.6966 33 1 3.7733 -3.2441 -0.7058 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004857504.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:40 Heat of formation + Delta-G solvation = 101.030938 kcal Electronic energy + Delta-G solvation = -17678.524787 eV Core-core repulsion = 14831.811481 eV Total energy + Delta-G solvation = -2846.713305 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 275.079 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.58021 -39.20512 -35.02458 -33.12263 -32.52211 -31.21724 -29.67042 -28.97553 -27.72658 -23.78600 -23.27303 -22.56842 -21.78296 -20.79815 -17.90445 -17.12003 -16.73906 -16.30175 -16.13982 -15.69258 -14.85310 -14.33005 -14.00762 -13.87731 -13.57591 -13.50993 -13.19161 -12.92679 -12.76344 -12.45138 -11.65987 -11.50552 -11.30839 -10.92079 -10.83229 -10.42202 -10.23960 -10.19280 -10.12249 -9.83381 -9.37102 -9.25510 -8.82003 -8.68650 -7.03474 -6.24704 -4.30173 0.65081 1.10295 1.61080 2.01972 2.67876 2.99139 3.12903 3.28346 3.36237 3.43554 3.61771 4.11080 4.31891 4.45600 4.61879 4.65525 4.81503 4.91104 5.06143 5.08779 5.15719 5.21750 5.39454 5.53857 5.69864 5.81464 6.01092 6.15586 6.21542 6.28887 6.61632 6.64143 6.67921 6.79823 7.31227 8.17404 8.70851 8.82658 9.30646 10.86257 Molecular weight = 275.08amu Principal moments of inertia in cm(-1) A = 0.039323 B = 0.003938 C = 0.003601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.888270 B = 7108.855006 C = 7774.657448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.467 5.467 3 C 0.177 3.823 4 S -0.012 6.012 5 C 0.034 3.966 6 C -0.527 4.527 7 H 0.084 0.916 8 C 0.088 3.912 9 N -0.887 5.887 10 Si 0.874 3.126 11 H -0.271 1.271 12 H -0.282 1.282 13 H -0.257 1.257 14 N -0.294 5.294 15 N -0.268 5.268 16 C 0.195 3.805 17 C -0.001 4.001 18 C -0.118 4.118 19 C -0.117 4.117 20 C -0.114 4.114 21 C -0.117 4.117 22 C -0.080 4.080 23 H 0.084 0.916 24 H 0.099 0.901 25 H 0.092 0.908 26 H 0.053 0.947 27 H 0.048 0.952 28 H 0.270 0.730 29 H 0.127 0.873 30 H 0.127 0.873 31 H 0.125 0.875 32 H 0.129 0.871 33 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.848 -22.816 -0.059 24.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.162 5.162 3 C -0.195 4.195 4 S 0.218 5.782 5 C -0.115 4.115 6 C -0.567 4.567 7 H 0.102 0.898 8 C -0.118 4.118 9 N -0.524 5.524 10 Si 0.700 3.300 11 H -0.196 1.196 12 H -0.207 1.207 13 H -0.181 1.181 14 N -0.139 5.139 15 N -0.109 5.109 16 C -0.071 4.071 17 C -0.004 4.004 18 C -0.138 4.138 19 C -0.135 4.135 20 C -0.133 4.133 21 C -0.135 4.135 22 C -0.100 4.100 23 H 0.103 0.897 24 H 0.117 0.883 25 H 0.111 0.889 26 H 0.072 0.928 27 H 0.067 0.933 28 H 0.080 0.920 29 H 0.145 0.855 30 H 0.145 0.855 31 H 0.143 0.857 32 H 0.147 0.853 33 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -9.333 -22.069 -0.064 23.961 hybrid contribution 0.695 -0.722 0.017 1.003 sum -8.638 -22.791 -0.047 24.373 Atomic orbital electron populations 1.22285 0.75481 1.05611 1.03938 1.46310 1.08350 1.04889 1.56632 1.27631 0.89622 0.97181 1.05099 1.85533 1.18267 0.83528 1.90881 1.21707 0.88879 0.99173 1.01702 1.20357 0.95916 0.85962 1.54438 0.89794 1.24764 0.99052 0.94510 0.93482 1.69849 1.31233 1.02621 1.48701 0.86835 0.83843 0.80024 0.79327 1.19628 1.20737 1.18132 1.74800 1.15849 1.02256 1.21014 1.74230 1.16507 1.03581 1.16560 1.22812 0.87076 0.88890 1.08365 1.17489 0.94454 0.86820 1.01607 1.21421 0.95146 0.97192 1.00008 1.21027 0.99934 0.92317 1.00218 1.21295 0.93835 0.99538 0.98644 1.21132 0.96498 0.95891 0.99950 1.21253 0.99655 0.91808 0.97272 0.89749 0.88260 0.88908 0.92833 0.93327 0.91993 0.85475 0.85510 0.85746 0.85329 0.84625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.71 9.31 59.85 0.56 1.27 16 2 N -0.47 -7.40 3.24 -121.46 -0.39 -7.79 16 3 C 0.18 3.50 8.07 -88.17 -0.71 2.78 16 4 S -0.01 -0.24 21.59 -107.50 -2.32 -2.56 16 5 C 0.03 0.83 4.05 36.00 0.15 0.98 16 6 C -0.53 -14.67 9.68 -34.44 -0.33 -15.00 16 7 H 0.08 2.48 7.95 -52.48 -0.42 2.06 16 8 C 0.09 2.49 5.47 -17.82 -0.10 2.39 16 9 N -0.89 -26.39 13.96 55.43 0.77 -25.61 16 10 Si 0.87 21.47 27.47 -169.99 -4.67 16.80 16 11 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 12 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 13 H -0.26 -6.28 6.54 56.52 0.37 -5.92 16 14 N -0.29 -6.51 11.59 30.71 0.36 -6.15 16 15 N -0.27 -5.36 12.02 32.59 0.39 -4.97 16 16 C 0.19 3.21 7.69 -153.75 -1.18 2.02 16 17 C 0.00 -0.01 5.87 -104.97 -0.62 -0.63 16 18 C -0.12 -1.15 8.72 -39.19 -0.34 -1.49 16 19 C -0.12 -0.92 10.03 -39.64 -0.40 -1.32 16 20 C -0.11 -0.87 10.04 -39.49 -0.40 -1.27 16 21 C -0.12 -1.02 10.03 -39.64 -0.40 -1.41 16 22 C -0.08 -0.91 9.70 -39.19 -0.38 -1.30 16 23 H 0.08 0.69 7.72 -51.93 -0.40 0.29 16 24 H 0.10 0.98 7.68 -51.93 -0.40 0.58 16 25 H 0.09 0.72 6.64 -51.93 -0.34 0.38 16 26 H 0.05 1.35 7.20 -51.92 -0.37 0.98 16 27 H 0.05 1.21 7.57 -51.92 -0.39 0.82 16 28 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 29 H 0.13 1.03 5.04 -52.49 -0.26 0.76 16 30 H 0.13 0.67 8.06 -52.49 -0.42 0.24 16 31 H 0.12 0.63 8.06 -52.49 -0.42 0.21 16 32 H 0.13 0.82 8.06 -52.49 -0.42 0.39 16 33 H 0.14 1.61 7.98 -52.49 -0.42 1.19 16 LS Contribution 299.54 15.07 4.51 4.51 Total: -1.00 -33.19 299.54 -8.95 -42.14 By element: Atomic # 1 Polarization: 0.04 SS G_CDS: -3.45 Total: -3.40 kcal Atomic # 6 Polarization: -8.82 SS G_CDS: -4.15 Total: -12.97 kcal Atomic # 7 Polarization: -45.65 SS G_CDS: 1.13 Total: -44.52 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.67 Total: 16.80 kcal Atomic # 16 Polarization: -0.24 SS G_CDS: -2.32 Total: -2.56 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -33.19 -8.95 -42.14 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004857504.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.171 kcal (2) G-P(sol) polarization free energy of solvation -33.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.140 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds