Wall clock time and date at job start Mon Mar 30 2020 01:38:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86803 * 120.00102 * 2 1 4 4 H 1.48506 * 109.47061 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47211 * 300.00682 * 3 2 1 6 6 H 1.48502 * 109.47001 * 60.00488 * 3 2 1 7 7 C 1.38816 * 119.99974 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99700 * 179.97438 * 7 2 1 9 9 O 1.34850 * 119.99887 * 359.97438 * 7 2 1 10 10 C 1.34738 * 116.99762 * 180.02562 * 9 7 2 11 11 O 1.21507 * 119.99860 * 359.97438 * 10 9 7 12 12 C 1.47674 * 119.99889 * 180.02562 * 10 9 7 13 13 C 1.39710 * 120.12006 * 359.97113 * 12 10 9 14 14 C 1.37952 * 119.98780 * 180.02562 * 13 12 10 15 15 C 1.38269 * 120.23092 * 359.72331 * 14 13 12 16 16 C 1.38964 * 120.23990 * 0.55221 * 15 14 13 17 17 N 1.39960 * 119.99638 * 179.72564 * 16 15 14 18 18 C 1.46766 * 124.34877 * 354.01651 * 17 16 15 19 19 C 1.54483 * 105.47247 * 162.98449 * 18 17 16 20 20 C 1.54623 * 101.76338 * 25.41403 * 19 18 17 21 21 C 1.34419 * 124.34969 * 174.01411 * 17 16 15 22 22 O 1.21284 * 124.94264 * 0.68003 * 21 17 16 23 23 C 1.38610 * 120.01102 * 359.44922 * 16 15 14 24 24 H 0.97004 * 120.00172 * 359.97438 * 1 2 3 25 25 H 1.08001 * 120.00508 * 0.02562 * 13 12 10 26 26 H 1.08003 * 119.88389 * 180.02562 * 14 13 12 27 27 H 1.08002 * 119.88333 * 180.30205 * 15 14 13 28 28 H 1.08998 * 110.24466 * 43.98411 * 18 17 16 29 29 H 1.09002 * 110.24583 * 281.98708 * 18 17 16 30 30 H 1.09005 * 110.96820 * 267.29571 * 19 18 17 31 31 H 1.08995 * 110.99681 * 143.55096 * 19 18 17 32 32 H 1.08996 * 110.48759 * 216.52092 * 20 19 18 33 33 H 1.09006 * 110.48289 * 93.88347 * 20 19 18 34 34 H 1.07994 * 120.11800 * 180.24810 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7082 1.3463 -0.0006 5 1 1.8893 2.3965 -1.2124 6 1 1.8894 2.3964 1.2126 7 6 2.0081 -1.2022 -0.0005 8 1 3.0881 -1.2021 -0.0010 9 8 1.3339 -2.3700 -0.0005 10 6 2.0677 -3.5000 -0.0005 11 8 3.2811 -3.4364 -0.0010 12 6 1.3973 -4.8158 -0.0011 13 6 0.0023 -4.8918 -0.0010 14 6 -0.6212 -6.1224 -0.0010 15 6 0.1299 -7.2833 -0.0069 16 6 1.5180 -7.2189 -0.0012 17 7 2.2732 -8.3972 -0.0014 18 6 1.7049 -9.7450 0.1191 19 6 2.8160 -10.7052 -0.3606 20 6 4.0909 -9.8747 -0.0851 21 6 3.6122 -8.4399 -0.1119 22 8 4.3322 -7.4692 -0.2130 23 6 2.1548 -5.9877 -0.0012 24 1 -0.4850 0.8401 0.0004 25 1 -0.5879 -3.9873 -0.0010 26 1 -1.6997 -6.1793 -0.0014 27 1 -0.3641 -8.2438 -0.0118 28 1 0.8237 -9.8409 -0.5152 29 1 1.4477 -9.9545 1.1574 30 1 2.7130 -10.9205 -1.4242 31 1 2.8160 -11.6254 0.2235 32 1 4.8326 -10.0441 -0.8656 33 1 4.5026 -10.1213 0.8936 34 1 3.2335 -5.9356 -0.0009 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000007620095.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:56 Heat of formation + Delta-G solvation = -103.376660 kcal Electronic energy + Delta-G solvation = -20388.242470 eV Core-core repulsion = 17057.619764 eV Total energy + Delta-G solvation = -3330.622706 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.099 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.14138 -41.15995 -39.44188 -37.75176 -37.27849 -34.48095 -34.11544 -32.28366 -30.16805 -28.69772 -27.76150 -25.26795 -24.19491 -23.06632 -21.54011 -20.91238 -19.95695 -19.10883 -17.92728 -17.72840 -17.41681 -16.70759 -16.66145 -16.47284 -16.22633 -15.58343 -15.01324 -14.80956 -14.61331 -14.51288 -14.44012 -13.74918 -13.67308 -13.55630 -13.18095 -12.81109 -12.70882 -12.48021 -12.27648 -12.23454 -12.07140 -11.99770 -11.23971 -11.18827 -10.77080 -10.74770 -10.09934 -9.03958 -8.63634 -6.41266 -0.30438 0.19774 1.29071 1.29659 1.43318 1.48608 1.72408 1.79750 2.07393 2.62877 2.73510 2.97165 3.29524 3.56630 3.89776 3.98826 4.05878 4.10561 4.20945 4.25061 4.32246 4.61507 4.64742 4.73167 4.82995 4.92194 5.02807 5.10185 5.11195 5.22224 5.34226 5.43325 5.47104 5.73670 5.92915 6.03856 6.50969 6.80186 6.95068 7.62721 8.57197 Molecular weight = 275.10amu Principal moments of inertia in cm(-1) A = 0.035089 B = 0.004056 C = 0.003651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.771192 B = 6902.382241 C = 7667.670703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.001 3.999 3 Si 1.022 2.978 4 H -0.269 1.269 5 H -0.254 1.254 6 H -0.253 1.253 7 C -0.427 4.427 8 H 0.077 0.923 9 O -0.225 6.225 10 C 0.425 3.575 11 O -0.587 6.587 12 C -0.098 4.098 13 C -0.104 4.104 14 C -0.084 4.084 15 C -0.110 4.110 16 C 0.149 3.851 17 N -0.562 5.562 18 C 0.083 3.917 19 C -0.114 4.114 20 C -0.143 4.143 21 C 0.485 3.515 22 O -0.569 6.569 23 C -0.135 4.135 24 H 0.283 0.717 25 H 0.125 0.875 26 H 0.181 0.819 27 H 0.186 0.814 28 H 0.113 0.887 29 H 0.103 0.897 30 H 0.095 0.905 31 H 0.132 0.868 32 H 0.113 0.887 33 H 0.126 0.874 34 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.840 -25.533 0.317 25.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.200 4.200 3 Si 0.839 3.161 4 H -0.194 1.194 5 H -0.178 1.178 6 H -0.177 1.177 7 C -0.503 4.503 8 H 0.095 0.905 9 O -0.133 6.133 10 C 0.275 3.725 11 O -0.487 6.487 12 C -0.100 4.100 13 C -0.124 4.124 14 C -0.102 4.102 15 C -0.130 4.130 16 C 0.054 3.946 17 N -0.285 5.285 18 C -0.036 4.036 19 C -0.152 4.152 20 C -0.183 4.183 21 C 0.277 3.723 22 O -0.448 6.448 23 C -0.156 4.156 24 H 0.093 0.907 25 H 0.143 0.857 26 H 0.198 0.802 27 H 0.204 0.796 28 H 0.131 0.869 29 H 0.121 0.879 30 H 0.114 0.886 31 H 0.151 0.849 32 H 0.131 0.869 33 H 0.144 0.856 34 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -3.360 -24.897 0.265 25.124 hybrid contribution 0.951 1.576 -0.009 1.841 sum -2.408 -23.321 0.256 23.446 Atomic orbital electron populations 1.70042 1.07546 1.29750 1.45468 1.26609 0.97036 1.02140 0.94218 0.84541 0.77513 0.74272 0.79742 1.19373 1.17761 1.17716 1.21561 0.92273 0.81183 1.55260 0.90545 1.83908 1.39564 1.13747 1.76037 1.21900 0.85879 0.86845 0.77830 1.90586 1.16977 1.88553 1.52576 1.19087 0.95079 0.88905 1.06935 1.21599 0.91881 1.00626 0.98261 1.21381 1.02135 0.89477 0.97215 1.21433 0.89462 1.01308 1.00764 1.17670 0.92098 0.84211 1.00584 1.46138 1.07262 1.06869 1.68244 1.22788 0.99144 0.76930 1.04746 1.22701 0.89723 0.98208 1.04528 1.22423 1.01158 0.87827 1.06869 1.22465 0.81882 0.93844 0.74119 1.90716 1.60501 1.43283 1.50330 1.21457 1.01571 0.90862 1.01726 0.90705 0.85707 0.80206 0.79645 0.86888 0.87897 0.88608 0.84946 0.86866 0.85606 0.85550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -53.92 13.67 21.63 0.30 -53.63 16 2 C 0.00 0.08 5.50 84.89 0.47 0.55 16 3 Si 1.02 45.53 29.55 68.60 2.03 47.55 16 4 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 5 H -0.25 -10.38 7.11 99.48 0.71 -9.67 16 6 H -0.25 -10.34 7.11 99.48 0.71 -9.63 16 7 C -0.43 -28.20 9.65 67.96 0.66 -27.55 16 8 H 0.08 5.21 6.86 -2.91 -0.02 5.19 16 9 O -0.22 -14.68 8.99 11.32 0.10 -14.58 16 10 C 0.43 25.98 7.84 70.32 0.55 26.53 16 11 O -0.59 -39.32 15.59 19.81 0.31 -39.01 16 12 C -0.10 -4.77 5.87 -20.11 -0.12 -4.88 16 13 C -0.10 -4.06 9.61 22.56 0.22 -3.84 16 14 C -0.08 -2.14 10.02 22.21 0.22 -1.92 16 15 C -0.11 -2.40 9.41 22.45 0.21 -2.19 16 16 C 0.15 4.59 6.59 38.11 0.25 4.84 16 17 N -0.56 -13.26 3.14 -627.81 -1.97 -15.23 16 18 C 0.08 0.73 6.51 86.83 0.57 1.29 16 19 C -0.11 -0.52 7.18 31.65 0.23 -0.29 16 20 C -0.14 -1.87 6.86 30.58 0.21 -1.66 16 21 C 0.49 13.67 7.92 87.90 0.70 14.36 16 22 O -0.57 -23.94 14.81 -3.04 -0.05 -23.99 16 23 C -0.14 -6.00 8.83 22.67 0.20 -5.80 16 24 H 0.28 15.28 8.31 -92.71 -0.77 14.51 16 25 H 0.12 5.25 7.61 -2.91 -0.02 5.23 16 26 H 0.18 2.89 8.06 -2.91 -0.02 2.87 16 27 H 0.19 1.89 6.72 -2.91 -0.02 1.87 16 28 H 0.11 0.45 7.22 -2.39 -0.02 0.44 16 29 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.10 0.31 8.14 -2.38 -0.02 0.29 16 31 H 0.13 -0.26 8.14 -2.39 -0.02 -0.28 16 32 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.13 1.22 8.14 -2.38 -0.02 1.20 16 34 H 0.13 6.64 4.83 -2.91 -0.01 6.63 16 Total: -1.00 -96.59 299.18 6.21 -90.38 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: 1.14 Total: 9.07 kcal Atomic # 6 Polarization: -4.92 SS G_CDS: 4.36 Total: -0.56 kcal Atomic # 7 Polarization: -67.19 SS G_CDS: -1.67 Total: -68.86 kcal Atomic # 8 Polarization: -77.94 SS G_CDS: 0.37 Total: -77.57 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.55 kcal Total: -96.59 6.21 -90.38 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007620095.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.001 kcal (2) G-P(sol) polarization free energy of solvation -96.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds