Wall clock time and date at job start Mon Mar 30 2020 01:33:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39757 * 120.09007 * 260.27845 * 3 2 1 5 5 C 1.37733 * 119.90124 * 179.73976 * 4 3 2 6 6 C 1.38971 * 120.09390 * 0.53731 * 5 4 3 7 7 O 1.35754 * 119.90662 * 179.69492 * 6 5 4 8 8 C 1.42904 * 117.00050 * 0.02562 * 7 6 5 9 9 C 1.50695 * 109.47444 * 179.97438 * 8 7 6 10 10 O 1.20827 * 119.99929 * 359.97438 * 9 8 7 11 11 O 1.34226 * 120.00338 * 180.02562 * 9 8 7 12 12 C 1.45198 * 117.00202 * 180.02562 * 11 9 8 13 13 C 1.52999 * 109.47265 * 179.97438 * 12 11 9 14 14 C 1.50697 * 109.47318 * 179.97438 * 13 12 11 15 15 H 1.08011 * 120.00101 * 359.97438 * 14 13 12 16 16 C 1.37870 * 120.00319 * 180.02562 * 14 13 12 17 17 N 1.31522 * 119.99987 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00430 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47198 * 89.99309 * 18 16 14 20 20 H 1.48503 * 109.47523 * 209.99571 * 18 16 14 21 21 H 1.48505 * 109.47208 * 329.99712 * 18 16 14 22 22 C 1.38962 * 120.18650 * 359.71703 * 6 5 4 23 23 C 1.37732 * 120.09997 * 0.02562 * 22 6 5 24 24 H 1.08001 * 120.05457 * 0.02562 * 4 3 2 25 25 H 1.08003 * 119.95573 * 180.25420 * 5 4 3 26 26 H 1.09004 * 109.47351 * 300.00064 * 8 7 6 27 27 H 1.09005 * 109.46933 * 59.99727 * 8 7 6 28 28 H 1.09001 * 109.47169 * 299.99668 * 12 11 9 29 29 H 1.08993 * 109.47339 * 59.99692 * 12 11 9 30 30 H 1.08990 * 109.47311 * 299.99826 * 13 12 11 31 31 H 1.09001 * 109.46966 * 59.99930 * 13 12 11 32 32 H 0.97002 * 119.99785 * 180.02562 * 17 16 14 33 33 H 1.08003 * 119.94957 * 179.97438 * 22 6 5 34 34 H 1.07996 * 120.04713 * 179.97438 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2686 0.2051 1.1919 5 6 4.6459 0.1996 1.1883 6 6 5.3389 0.0023 0.0000 7 8 6.6964 0.0038 -0.0002 8 6 7.3451 0.2133 1.2558 9 6 8.8391 0.1820 1.0611 10 8 9.3010 -0.0016 -0.0402 11 8 9.6567 0.3568 2.1111 12 6 11.0842 0.3149 1.8493 13 6 11.8491 0.5329 3.1563 14 6 13.3308 0.4888 2.8846 15 1 13.6909 0.3214 1.8802 16 6 14.2266 0.6609 3.9184 17 7 13.7881 0.8642 5.1416 18 14 16.0632 0.6069 3.5816 19 1 16.5485 1.9738 3.2633 20 1 16.7721 0.0971 4.7828 21 1 16.3292 -0.2932 2.4307 22 6 4.6461 -0.1962 -1.1882 23 6 3.2688 -0.1974 -1.1928 24 1 2.7309 0.3627 2.1152 25 1 5.1882 0.3535 2.1096 26 1 7.0512 1.1823 1.6594 27 1 7.0531 -0.5736 1.9513 28 1 11.3485 -0.6564 1.4310 29 1 11.3467 1.0996 1.1398 30 1 11.5849 1.5042 3.5742 31 1 11.5867 -0.2516 3.8661 32 1 14.4185 0.9857 5.8688 33 1 5.1885 -0.3488 -2.1096 34 1 2.7313 -0.3513 -2.1167 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000021976887.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:30 Heat of formation + Delta-G solvation = -92.398683 kcal Electronic energy + Delta-G solvation = -18929.120874 eV Core-core repulsion = 15598.974209 eV Total energy + Delta-G solvation = -3330.146665 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.099 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.78481 -40.98097 -39.01830 -37.68895 -37.11569 -35.44618 -32.59449 -32.22345 -31.62386 -29.82816 -26.95841 -24.47114 -24.11188 -23.02135 -22.01393 -19.92768 -19.50133 -18.80142 -18.11905 -18.03373 -17.68292 -16.68803 -16.63930 -16.33617 -15.56335 -15.13722 -15.08069 -14.86468 -14.62876 -14.50058 -14.36682 -13.98164 -13.56352 -13.44629 -13.10974 -13.09533 -13.00660 -12.60722 -12.57369 -12.08209 -12.01477 -11.78361 -11.51122 -11.48856 -11.31979 -10.59690 -10.08759 -9.31876 -8.26161 -6.38679 -0.17356 0.33873 1.07623 1.08774 1.43683 1.43937 1.55605 1.65657 1.92952 2.36397 2.51981 2.88406 2.93437 3.08705 3.49540 3.78532 3.92316 4.02882 4.05486 4.18326 4.24310 4.26137 4.44978 4.57855 4.70708 5.00117 5.02794 5.22439 5.24872 5.34591 5.49146 5.51396 5.56775 5.75341 6.07654 6.19170 6.49585 6.65802 6.75304 7.31063 8.86066 Molecular weight = 275.10amu Principal moments of inertia in cm(-1) A = 0.063090 B = 0.002331 C = 0.002252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 443.704311 B =12011.230902 C =12429.186386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C 0.285 3.715 3 C -0.083 4.083 4 C -0.019 4.019 5 C -0.209 4.209 6 C 0.151 3.849 7 O -0.313 6.313 8 C 0.072 3.928 9 C 0.455 3.545 10 O -0.533 6.533 11 O -0.355 6.355 12 C 0.092 3.908 13 C 0.030 3.970 14 C -0.550 4.550 15 H 0.064 0.936 16 C 0.007 3.993 17 N -0.925 5.925 18 Si 0.971 3.029 19 H -0.271 1.271 20 H -0.279 1.279 21 H -0.264 1.264 22 C -0.158 4.158 23 C -0.020 4.020 24 H 0.158 0.842 25 H 0.166 0.834 26 H 0.144 0.856 27 H 0.144 0.856 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.010 0.990 31 H 0.010 0.990 32 H 0.268 0.732 33 H 0.148 0.852 34 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.660 -1.352 -8.133 21.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.152 5.152 2 C -0.029 4.029 3 C -0.087 4.087 4 C -0.039 4.039 5 C -0.228 4.228 6 C 0.104 3.896 7 O -0.226 6.226 8 C -0.003 4.003 9 C 0.298 3.702 10 O -0.422 6.422 11 O -0.272 6.272 12 C 0.019 3.981 13 C -0.007 4.007 14 C -0.588 4.588 15 H 0.082 0.918 16 C -0.192 4.192 17 N -0.564 5.564 18 Si 0.795 3.205 19 H -0.196 1.196 20 H -0.205 1.205 21 H -0.188 1.188 22 C -0.176 4.176 23 C -0.040 4.040 24 H 0.175 0.825 25 H 0.184 0.816 26 H 0.162 0.838 27 H 0.161 0.839 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.029 0.971 31 H 0.029 0.971 32 H 0.076 0.924 33 H 0.166 0.834 34 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -21.040 -1.404 -8.426 22.708 hybrid contribution 1.545 0.023 0.087 1.547 sum -19.495 -1.381 -8.340 21.249 Atomic orbital electron populations 1.81298 1.13551 1.11474 1.08856 1.25845 0.92667 0.91970 0.92373 1.16033 0.83370 1.13021 0.96254 1.21198 0.93253 0.92213 0.97263 1.21498 0.95046 1.08084 0.98135 1.19549 0.80945 0.93570 0.95489 1.86049 1.17713 1.86623 1.32258 1.22223 0.83930 1.08275 0.85896 1.23776 0.91310 0.72673 0.82410 1.90678 1.78693 1.45355 1.27458 1.86456 1.20606 1.81956 1.38198 1.23221 0.73640 1.01214 1.00069 1.18995 0.93477 0.96888 0.91369 1.21379 0.91431 1.50838 0.95177 0.91765 1.25918 1.04444 0.94197 0.94642 1.70082 1.36651 1.49013 1.00640 0.85360 0.78367 0.78795 0.78007 1.19644 1.20480 1.18848 1.20527 0.93481 1.06312 0.97328 1.21125 0.92511 0.92946 0.97453 0.82455 0.81636 0.83837 0.83850 0.92039 0.92022 0.97136 0.97140 0.92352 0.83447 0.82356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -10.28 18.54 19.00 0.35 -9.93 16 2 C 0.29 4.51 15.33 88.33 1.35 5.87 16 3 C -0.08 -0.93 5.74 -21.30 -0.12 -1.05 16 4 C -0.02 -0.16 9.75 22.52 0.22 0.06 16 5 C -0.21 -1.96 9.01 22.33 0.20 -1.76 16 6 C 0.15 2.14 6.69 22.62 0.15 2.29 16 7 O -0.31 -6.22 9.66 -71.72 -0.69 -6.91 16 8 C 0.07 1.22 5.33 71.23 0.38 1.60 16 9 C 0.45 13.57 8.03 71.23 0.57 14.14 16 10 O -0.53 -19.97 16.25 28.39 0.46 -19.51 16 11 O -0.36 -12.46 10.22 -51.37 -0.53 -12.99 16 12 C 0.09 3.84 5.40 71.98 0.39 4.22 16 13 C 0.03 1.52 5.35 29.85 0.16 1.68 16 14 C -0.55 -30.15 9.11 25.60 0.23 -29.91 16 15 H 0.06 3.38 7.74 -2.90 -0.02 3.35 16 16 C 0.01 0.40 5.46 84.65 0.46 0.86 16 17 N -0.92 -53.68 13.29 21.45 0.28 -53.39 16 18 Si 0.97 42.50 29.54 68.60 2.03 44.52 16 19 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 20 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 21 H -0.26 -11.13 7.11 99.48 0.71 -10.43 16 22 C -0.16 -1.95 9.97 22.32 0.22 -1.73 16 23 C -0.02 -0.20 9.75 22.52 0.22 0.02 16 24 H 0.16 0.72 8.06 -2.91 -0.02 0.70 16 25 H 0.17 0.76 6.28 -2.91 -0.02 0.74 16 26 H 0.14 1.49 7.65 -2.38 -0.02 1.47 16 27 H 0.14 1.49 7.65 -2.38 -0.02 1.48 16 28 H 0.06 2.56 8.13 -2.39 -0.02 2.54 16 29 H 0.06 2.57 8.13 -2.39 -0.02 2.55 16 30 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.27 14.52 8.31 -92.71 -0.77 13.74 16 33 H 0.15 1.68 8.06 -2.91 -0.02 1.66 16 34 H 0.16 0.90 8.06 -2.91 -0.02 0.88 16 Total: -1.00 -71.62 318.09 7.47 -64.15 By element: Atomic # 1 Polarization: -3.36 SS G_CDS: 1.13 Total: -2.24 kcal Atomic # 6 Polarization: -8.15 SS G_CDS: 4.44 Total: -3.70 kcal Atomic # 7 Polarization: -63.96 SS G_CDS: 0.64 Total: -63.32 kcal Atomic # 8 Polarization: -38.65 SS G_CDS: -0.76 Total: -39.41 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.52 kcal Total: -71.62 7.47 -64.15 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000021976887.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.248 kcal (2) G-P(sol) polarization free energy of solvation -71.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds