Wall clock time and date at job start Mon Mar 30 2020 01:16:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36940 * 119.99845 * 2 1 4 4 H 1.07996 * 119.99894 * 200.36656 * 3 2 1 5 5 C 1.38813 * 119.99892 * 20.37314 * 3 2 1 6 6 N 1.31619 * 120.00216 * 14.97062 * 5 3 2 7 7 Si 1.86803 * 119.99818 * 194.96747 * 5 3 2 8 8 H 1.48502 * 109.46987 * 85.00197 * 7 5 3 9 9 H 1.48504 * 109.47179 * 205.00245 * 7 5 3 10 10 H 1.48501 * 109.47057 * 325.00040 * 7 5 3 11 11 C 1.46497 * 120.00079 * 179.97438 * 2 1 3 12 12 C 1.50706 * 109.47027 * 270.00336 * 11 2 1 13 13 C 1.38170 * 120.02762 * 260.00232 * 12 11 2 14 14 C 1.38242 * 120.05446 * 180.02562 * 13 12 11 15 15 C 1.38289 * 120.11114 * 359.95169 * 14 13 12 16 16 C 1.38120 * 120.05744 * 0.02562 * 15 14 13 17 17 C 1.38710 * 120.02903 * 80.02369 * 12 11 2 18 18 O 1.35903 * 120.05210 * 359.95096 * 17 12 11 19 19 C 1.42902 * 116.99494 * 180.02562 * 18 17 12 20 20 F 1.39900 * 109.47119 * 60.00848 * 19 18 17 21 21 F 1.39904 * 109.46809 * 180.02562 * 19 18 17 22 22 F 1.39894 * 109.47667 * 300.00215 * 19 18 17 23 23 H 1.08993 * 109.47661 * 275.08262 * 1 2 3 24 24 H 1.09001 * 109.46516 * 35.08950 * 1 2 3 25 25 H 1.09007 * 109.46869 * 155.07849 * 1 2 3 26 26 H 0.97002 * 119.99770 * 180.02562 * 6 5 3 27 27 H 1.09003 * 109.47094 * 150.00913 * 11 2 1 28 28 H 1.08993 * 109.47337 * 29.99966 * 11 2 1 29 29 H 1.08003 * 119.97106 * 0.02562 * 13 12 11 30 30 H 1.07996 * 119.94561 * 179.97438 * 14 13 12 31 31 H 1.08004 * 119.97183 * 179.74312 * 15 14 13 32 32 H 1.07998 * 120.02639 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1790 1.2152 -0.3255 5 6 1.5207 2.3505 0.4185 6 7 0.3875 2.2835 1.0846 7 14 2.2827 4.0127 0.0364 8 1 1.8687 4.4464 -1.3222 9 1 1.8225 5.0098 1.0360 10 1 3.7626 3.9032 0.0916 11 6 2.1975 -1.2687 0.0006 12 6 2.4486 -1.7031 1.4216 13 6 3.6820 -1.4830 2.0043 14 6 3.9131 -1.8817 3.3076 15 6 2.9108 -2.5008 4.0318 16 6 1.6760 -2.7227 3.4541 17 6 1.4419 -2.3247 2.1457 18 8 0.2278 -2.5418 1.5749 19 6 -0.7614 -3.1865 2.3800 20 9 -1.0139 -2.4123 3.5175 21 9 -1.9414 -3.3307 1.6423 22 9 -0.2974 -4.4479 2.7679 23 1 -0.3634 0.0910 1.0235 24 1 -0.3632 0.8409 -0.5908 25 1 -0.3633 -0.9320 -0.4331 26 1 -0.0522 3.0973 1.3767 27 1 3.1500 -1.1385 -0.5132 28 1 1.6085 -2.0286 -0.5129 29 1 4.4661 -0.9990 1.4410 30 1 4.8779 -1.7092 3.7611 31 1 3.0951 -2.8152 5.0485 32 1 0.8937 -3.2066 4.0200 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000043645699.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:22 Heat of formation + Delta-G solvation = -142.334921 kcal Electronic energy + Delta-G solvation = -22249.796528 eV Core-core repulsion = 18375.627725 eV Total energy + Delta-G solvation = -3874.168803 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.087 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -50.17616 -47.90187 -47.76068 -39.87406 -37.24148 -35.48859 -32.06469 -30.23163 -29.77766 -26.19775 -25.64164 -25.49288 -22.33537 -22.08772 -20.50343 -19.21829 -18.87881 -18.57400 -16.75731 -16.26161 -15.68747 -14.99919 -14.88965 -14.64080 -14.54059 -14.23416 -14.16744 -14.07447 -13.90902 -13.66669 -13.37450 -13.09094 -12.96502 -12.74865 -11.94452 -11.65867 -11.33511 -11.11712 -10.86964 -10.62612 -10.56821 -10.23893 -9.99658 -9.88677 -8.55683 -8.46864 -8.01488 -6.81118 -5.73867 -3.16295 1.68104 1.74521 1.88906 3.14001 3.37936 3.43731 3.45071 4.03175 4.08474 4.32725 4.51191 5.04997 5.10395 5.36880 5.41980 5.66006 5.70408 5.74982 5.93297 6.13562 6.35795 6.54420 6.65025 6.69611 6.85842 6.88859 7.09064 7.40963 7.42412 7.75309 7.82431 8.35956 9.20808 9.83909 10.32999 11.30247 Molecular weight = 275.09amu Principal moments of inertia in cm(-1) A = 0.019811 B = 0.007075 C = 0.005966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.002337 B = 3956.724047 C = 4691.922978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.168 3.832 2 N -0.587 5.587 3 C -0.255 4.255 4 H 0.071 0.929 5 C 0.003 3.997 6 N -0.901 5.901 7 Si 0.905 3.095 8 H -0.287 1.287 9 H -0.292 1.292 10 H -0.280 1.280 11 C 0.183 3.817 12 C -0.081 4.081 13 C -0.077 4.077 14 C -0.139 4.139 15 C -0.104 4.104 16 C -0.193 4.193 17 C 0.109 3.891 18 O -0.295 6.295 19 C 0.600 3.400 20 F -0.166 7.166 21 F -0.137 7.137 22 F -0.174 7.174 23 H 0.027 0.973 24 H 0.042 0.958 25 H 0.002 0.998 26 H 0.253 0.747 27 H 0.058 0.942 28 H 0.052 0.948 29 H 0.130 0.870 30 H 0.120 0.880 31 H 0.121 0.879 32 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.467 -11.967 3.817 12.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.307 5.307 3 C -0.384 4.384 4 H 0.089 0.911 5 C -0.196 4.196 6 N -0.545 5.545 7 Si 0.735 3.265 8 H -0.214 1.214 9 H -0.218 1.218 10 H -0.205 1.205 11 C 0.056 3.944 12 C -0.086 4.086 13 C -0.097 4.097 14 C -0.157 4.157 15 C -0.123 4.123 16 C -0.212 4.212 17 C 0.066 3.934 18 O -0.214 6.214 19 C 0.509 3.491 20 F -0.149 7.149 21 F -0.118 7.118 22 F -0.156 7.156 23 H 0.046 0.954 24 H 0.061 0.939 25 H 0.020 0.980 26 H 0.063 0.937 27 H 0.076 0.924 28 H 0.070 0.930 29 H 0.148 0.852 30 H 0.138 0.862 31 H 0.139 0.861 32 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 1.223 -11.754 3.667 12.373 hybrid contribution -0.027 0.924 0.464 1.034 sum 1.196 -10.830 4.130 11.652 Atomic orbital electron populations 1.20785 0.81978 0.95504 0.99388 1.44184 1.02148 1.00147 1.84211 1.19248 0.97321 0.84663 1.37204 0.91078 1.25028 0.97862 0.98489 0.98259 1.70109 1.18603 1.26904 1.38851 0.86264 0.78651 0.83926 0.77630 1.21385 1.21780 1.20504 1.19935 0.96886 0.88862 0.88762 1.20650 0.90688 0.95473 1.01771 1.20876 0.95963 0.97956 0.94867 1.21083 0.99209 1.00506 0.94896 1.20693 0.92488 0.99691 0.99402 1.21336 0.99807 1.06064 0.93969 1.18487 0.82454 0.99984 0.92495 1.86529 1.21311 1.74026 1.39528 1.19453 0.78902 0.75449 0.75312 1.93294 1.94282 1.75311 1.51965 1.93274 1.45371 1.95354 1.77831 1.93253 1.88674 1.42709 1.91010 0.95420 0.93893 0.97974 0.93669 0.92360 0.92954 0.85248 0.86210 0.86138 0.85937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.27 7.97 59.85 0.48 4.74 16 2 N -0.59 -14.83 2.91 -182.50 -0.53 -15.36 16 3 C -0.25 -6.92 9.68 -15.06 -0.15 -7.07 16 4 H 0.07 1.86 7.86 -52.49 -0.41 1.45 16 5 C 0.00 0.07 5.06 -17.43 -0.09 -0.02 16 6 N -0.90 -26.51 10.67 55.49 0.59 -25.92 16 7 Si 0.91 21.81 29.58 -169.99 -5.03 16.79 16 8 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 9 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 11 C 0.18 3.80 5.51 -5.19 -0.03 3.78 16 12 C -0.08 -1.60 5.48 -104.47 -0.57 -2.17 16 13 C -0.08 -1.36 9.67 -39.60 -0.38 -1.74 16 14 C -0.14 -2.13 10.04 -39.56 -0.40 -2.53 16 15 C -0.10 -1.59 10.04 -39.61 -0.40 -1.98 16 16 C -0.19 -3.27 8.26 -39.44 -0.33 -3.60 16 17 C 0.11 2.08 6.46 -39.22 -0.25 1.83 16 18 O -0.29 -5.58 8.34 -19.44 -0.16 -5.75 16 19 C 0.60 9.69 3.42 101.05 0.35 10.04 16 20 F -0.17 -2.79 15.56 2.25 0.04 -2.76 16 21 F -0.14 -2.10 17.53 2.25 0.04 -2.06 16 22 F -0.17 -2.52 15.56 2.25 0.04 -2.48 16 23 H 0.03 0.77 7.40 -51.93 -0.38 0.38 16 24 H 0.04 1.16 7.21 -51.93 -0.37 0.79 16 25 H 0.00 0.04 7.63 -51.92 -0.40 -0.36 16 26 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 27 H 0.06 1.12 7.89 -51.93 -0.41 0.71 16 28 H 0.05 1.03 7.57 -51.93 -0.39 0.63 16 29 H 0.13 2.08 8.04 -52.48 -0.42 1.66 16 30 H 0.12 1.49 8.06 -52.49 -0.42 1.06 16 31 H 0.12 1.46 8.06 -52.48 -0.42 1.04 16 32 H 0.12 1.90 5.10 -52.49 -0.27 1.63 16 LS Contribution 286.19 15.07 4.31 4.31 Total: -1.00 -29.90 286.19 -5.52 -35.41 By element: Atomic # 1 Polarization: -0.42 SS G_CDS: -3.04 Total: -3.46 kcal Atomic # 6 Polarization: 3.04 SS G_CDS: -1.77 Total: 1.27 kcal Atomic # 7 Polarization: -41.34 SS G_CDS: 0.06 Total: -41.28 kcal Atomic # 8 Polarization: -5.58 SS G_CDS: -0.16 Total: -5.75 kcal Atomic # 9 Polarization: -7.41 SS G_CDS: 0.11 Total: -7.30 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.03 Total: 16.79 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -29.90 -5.52 -35.41 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043645699.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.922 kcal (2) G-P(sol) polarization free energy of solvation -29.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds