Wall clock time and date at job start Mon Mar 30 2020 01:16:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36940 * 119.99845 * 2 1 4 4 H 1.07996 * 119.99894 * 200.36656 * 3 2 1 5 5 C 1.38813 * 119.99892 * 20.37314 * 3 2 1 6 6 N 1.31619 * 120.00216 * 14.97062 * 5 3 2 7 7 Si 1.86803 * 119.99818 * 194.96747 * 5 3 2 8 8 H 1.48502 * 109.46987 * 85.00197 * 7 5 3 9 9 H 1.48504 * 109.47179 * 205.00245 * 7 5 3 10 10 H 1.48501 * 109.47057 * 325.00040 * 7 5 3 11 11 C 1.46497 * 120.00079 * 179.97438 * 2 1 3 12 12 C 1.50706 * 109.47027 * 270.00336 * 11 2 1 13 13 C 1.38170 * 120.02762 * 260.00232 * 12 11 2 14 14 C 1.38242 * 120.05446 * 180.02562 * 13 12 11 15 15 C 1.38289 * 120.11114 * 359.95169 * 14 13 12 16 16 C 1.38120 * 120.05744 * 0.02562 * 15 14 13 17 17 C 1.38710 * 120.02903 * 80.02369 * 12 11 2 18 18 O 1.35903 * 120.05210 * 359.95096 * 17 12 11 19 19 C 1.42902 * 116.99494 * 180.02562 * 18 17 12 20 20 F 1.39900 * 109.47119 * 60.00848 * 19 18 17 21 21 F 1.39904 * 109.46809 * 180.02562 * 19 18 17 22 22 F 1.39894 * 109.47667 * 300.00215 * 19 18 17 23 23 H 1.08993 * 109.47661 * 275.08262 * 1 2 3 24 24 H 1.09001 * 109.46516 * 35.08950 * 1 2 3 25 25 H 1.09007 * 109.46869 * 155.07849 * 1 2 3 26 26 H 0.97002 * 119.99770 * 180.02562 * 6 5 3 27 27 H 1.09003 * 109.47094 * 150.00913 * 11 2 1 28 28 H 1.08993 * 109.47337 * 29.99966 * 11 2 1 29 29 H 1.08003 * 119.97106 * 0.02562 * 13 12 11 30 30 H 1.07996 * 119.94561 * 179.97438 * 14 13 12 31 31 H 1.08004 * 119.97183 * 179.74312 * 15 14 13 32 32 H 1.07998 * 120.02639 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1790 1.2152 -0.3255 5 6 1.5207 2.3505 0.4185 6 7 0.3875 2.2835 1.0846 7 14 2.2827 4.0127 0.0364 8 1 1.8687 4.4464 -1.3222 9 1 1.8225 5.0098 1.0360 10 1 3.7626 3.9032 0.0916 11 6 2.1975 -1.2687 0.0006 12 6 2.4486 -1.7031 1.4216 13 6 3.6820 -1.4830 2.0043 14 6 3.9131 -1.8817 3.3076 15 6 2.9108 -2.5008 4.0318 16 6 1.6760 -2.7227 3.4541 17 6 1.4419 -2.3247 2.1457 18 8 0.2278 -2.5418 1.5749 19 6 -0.7614 -3.1865 2.3800 20 9 -1.0139 -2.4123 3.5175 21 9 -1.9414 -3.3307 1.6423 22 9 -0.2974 -4.4479 2.7679 23 1 -0.3634 0.0910 1.0235 24 1 -0.3632 0.8409 -0.5908 25 1 -0.3633 -0.9320 -0.4331 26 1 -0.0522 3.0973 1.3767 27 1 3.1500 -1.1385 -0.5132 28 1 1.6085 -2.0286 -0.5129 29 1 4.4661 -0.9990 1.4410 30 1 4.8779 -1.7092 3.7611 31 1 3.0951 -2.8152 5.0485 32 1 0.8937 -3.2066 4.0200 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000043645699.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:21 Heat of formation + Delta-G solvation = -159.128857 kcal Electronic energy + Delta-G solvation = -22250.524768 eV Core-core repulsion = 18375.627725 eV Total energy + Delta-G solvation = -3874.897043 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.087 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -51.45345 -49.16675 -49.03995 -41.24319 -38.61413 -37.32408 -33.83816 -31.88943 -31.15286 -28.04794 -27.43087 -26.88020 -23.85400 -23.58660 -22.12437 -20.54407 -20.16804 -19.88296 -18.71108 -17.64667 -17.05473 -16.75103 -16.27891 -16.09755 -15.81204 -15.65243 -15.48140 -15.35089 -15.29127 -15.20200 -14.95948 -14.88501 -14.46448 -14.10685 -13.65546 -13.08632 -13.05244 -12.75605 -12.68304 -12.42644 -12.10914 -12.04673 -11.85390 -11.79884 -10.62697 -9.81511 -9.37871 -8.82250 -7.80883 -5.26781 0.35941 0.41536 0.58170 1.47579 1.49873 1.57261 1.82711 2.51826 2.73628 2.79610 3.03362 3.33976 3.77954 3.80788 3.86448 4.19698 4.27180 4.43375 4.58711 4.69235 4.86160 4.96559 5.08727 5.26282 5.32089 5.40683 5.58406 5.64471 5.71238 5.71545 6.11018 6.31439 7.14497 7.85788 8.31624 9.22854 Molecular weight = 275.09amu Principal moments of inertia in cm(-1) A = 0.019811 B = 0.007075 C = 0.005966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.002337 B = 3956.724047 C = 4691.922978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.191 3.809 2 N -0.604 5.604 3 C -0.256 4.256 4 H 0.080 0.920 5 C -0.055 4.055 6 N -0.939 5.939 7 Si 0.968 3.032 8 H -0.287 1.287 9 H -0.300 1.300 10 H -0.264 1.264 11 C 0.184 3.816 12 C -0.110 4.110 13 C -0.086 4.086 14 C -0.135 4.135 15 C -0.095 4.095 16 C -0.203 4.203 17 C 0.089 3.911 18 O -0.315 6.315 19 C 0.605 3.395 20 F -0.171 7.171 21 F -0.133 7.133 22 F -0.161 7.161 23 H -0.003 1.003 24 H 0.015 0.985 25 H 0.022 0.978 26 H 0.246 0.754 27 H 0.071 0.929 28 H 0.058 0.942 29 H 0.140 0.860 30 H 0.156 0.844 31 H 0.159 0.841 32 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.285 -12.801 4.744 14.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.046 3.954 2 N -0.326 5.326 3 C -0.386 4.386 4 H 0.098 0.902 5 C -0.250 4.250 6 N -0.585 5.585 7 Si 0.797 3.203 8 H -0.214 1.214 9 H -0.227 1.227 10 H -0.189 1.189 11 C 0.058 3.942 12 C -0.114 4.114 13 C -0.104 4.104 14 C -0.153 4.153 15 C -0.113 4.113 16 C -0.222 4.222 17 C 0.046 3.954 18 O -0.235 6.235 19 C 0.514 3.486 20 F -0.153 7.153 21 F -0.115 7.115 22 F -0.144 7.144 23 H 0.015 0.985 24 H 0.034 0.966 25 H 0.041 0.959 26 H 0.055 0.945 27 H 0.089 0.911 28 H 0.076 0.924 29 H 0.158 0.842 30 H 0.174 0.826 31 H 0.176 0.824 32 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 3.082 -12.638 4.592 13.795 hybrid contribution -0.530 0.992 0.216 1.145 sum 2.553 -11.646 4.808 12.855 Atomic orbital electron populations 1.20396 0.82769 0.95189 0.97054 1.44288 1.01993 1.01337 1.84947 1.19598 0.97525 0.85597 1.35914 0.90225 1.25776 0.98598 1.01765 0.98857 1.70289 1.20330 1.26999 1.40902 0.85264 0.78552 0.79687 0.76831 1.21358 1.22679 1.18893 1.19968 0.96965 0.87138 0.90130 1.20557 0.92247 0.97754 1.00848 1.21160 0.95462 0.97719 0.96104 1.21501 1.00809 0.99100 0.93917 1.21221 0.91391 0.97766 1.00895 1.21610 1.01128 1.06150 0.93289 1.18757 0.82362 1.00720 0.93542 1.86468 1.21828 1.74582 1.40606 1.19312 0.78597 0.75613 0.75036 1.93282 1.94282 1.75600 1.52122 1.93282 1.45091 1.95323 1.77771 1.93273 1.88534 1.41716 1.90833 0.98514 0.96649 0.95919 0.94527 0.91055 0.92378 0.84219 0.82593 0.82369 0.84805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.19 9.96 7.97 127.77 1.02 10.98 16 2 N -0.60 -30.70 2.91 -731.30 -2.13 -32.83 16 3 C -0.26 -13.90 9.68 84.03 0.81 -13.09 16 4 H 0.08 4.08 7.86 -2.91 -0.02 4.06 16 5 C -0.06 -3.10 5.06 84.86 0.43 -2.67 16 6 N -0.94 -56.72 10.67 21.65 0.23 -56.49 16 7 Si 0.97 45.14 29.58 68.60 2.03 47.16 16 8 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 9 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 10 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 11 C 0.18 7.55 5.51 85.64 0.47 8.03 16 12 C -0.11 -4.25 5.48 -19.77 -0.11 -4.35 16 13 C -0.09 -2.82 9.67 22.25 0.22 -2.60 16 14 C -0.14 -3.67 10.04 22.28 0.22 -3.45 16 15 C -0.09 -2.53 10.04 22.25 0.22 -2.31 16 16 C -0.20 -6.47 8.26 22.36 0.18 -6.28 16 17 C 0.09 3.33 6.46 22.51 0.15 3.47 16 18 O -0.31 -11.89 8.34 -92.46 -0.77 -12.66 16 19 C 0.61 19.21 3.42 113.37 0.39 19.60 16 20 F -0.17 -5.65 15.56 44.97 0.70 -4.95 16 21 F -0.13 -4.05 17.53 44.97 0.79 -3.26 16 22 F -0.16 -4.45 15.56 44.97 0.70 -3.75 16 23 H 0.00 -0.20 7.40 -2.39 -0.02 -0.22 16 24 H 0.01 0.84 7.21 -2.39 -0.02 0.82 16 25 H 0.02 1.04 7.63 -2.38 -0.02 1.03 16 26 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 27 H 0.07 2.67 7.89 -2.39 -0.02 2.66 16 28 H 0.06 2.26 7.57 -2.39 -0.02 2.24 16 29 H 0.14 4.18 8.04 -2.91 -0.02 4.15 16 30 H 0.16 3.08 8.06 -2.91 -0.02 3.06 16 31 H 0.16 3.03 8.06 -2.91 -0.02 3.00 16 32 H 0.13 3.86 5.10 -2.91 -0.01 3.85 16 Total: -1.00 -64.64 286.19 6.71 -57.93 By element: Atomic # 1 Polarization: 0.37 SS G_CDS: 1.15 Total: 1.53 kcal Atomic # 6 Polarization: 3.32 SS G_CDS: 4.00 Total: 7.32 kcal Atomic # 7 Polarization: -87.43 SS G_CDS: -1.90 Total: -89.32 kcal Atomic # 8 Polarization: -11.89 SS G_CDS: -0.77 Total: -12.66 kcal Atomic # 9 Polarization: -14.15 SS G_CDS: 2.19 Total: -11.96 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.16 kcal Total: -64.64 6.71 -57.93 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043645699.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.199 kcal (2) G-P(sol) polarization free energy of solvation -64.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds