Wall clock time and date at job start Mon Mar 30 2020 01:16:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.36936 * 119.99994 * 2 1 4 4 H 1.08006 * 119.99716 * 154.60423 * 3 2 1 5 5 C 1.38815 * 120.00095 * 334.60346 * 3 2 1 6 6 N 1.31622 * 119.99508 * 3.91403 * 5 3 2 7 7 Si 1.86797 * 120.00036 * 183.91118 * 5 3 2 8 8 H 1.48502 * 109.46887 * 85.00282 * 7 5 3 9 9 H 1.48494 * 109.47106 * 205.00158 * 7 5 3 10 10 H 1.48498 * 109.47139 * 325.00161 * 7 5 3 11 11 C 1.46501 * 120.00115 * 180.02562 * 2 1 3 12 12 C 1.50699 * 109.47517 * 89.99961 * 11 2 1 13 13 C 1.38270 * 119.94426 * 269.73358 * 12 11 2 14 14 C 1.38144 * 120.05326 * 179.72722 * 13 12 11 15 15 C 1.38730 * 119.94744 * 0.55851 * 14 13 12 16 16 O 1.35897 * 120.05813 * 179.68670 * 15 14 13 17 17 C 1.42900 * 117.00179 * 0.02562 * 16 15 14 18 18 F 1.39906 * 109.46959 * 59.99678 * 17 16 15 19 19 F 1.39899 * 109.47190 * 179.97438 * 17 16 15 20 20 F 1.39902 * 109.46750 * 299.99851 * 17 16 15 21 21 C 1.38736 * 119.88516 * 359.71048 * 15 14 13 22 22 C 1.38142 * 119.94703 * 359.97438 * 21 15 14 23 23 H 1.09009 * 109.47449 * 84.46912 * 1 2 3 24 24 H 1.09007 * 109.47424 * 204.45889 * 1 2 3 25 25 H 1.08995 * 109.47685 * 324.46728 * 1 2 3 26 26 H 0.97000 * 119.99193 * 179.97438 * 6 5 3 27 27 H 1.08997 * 109.47352 * 210.00200 * 11 2 1 28 28 H 1.09000 * 109.47139 * 330.00022 * 11 2 1 29 29 H 1.08000 * 119.97227 * 359.96604 * 13 12 11 30 30 H 1.08001 * 120.02469 * 180.25033 * 14 13 12 31 31 H 1.08000 * 120.02685 * 179.97438 * 21 15 14 32 32 H 1.07999 * 119.97506 * 179.97438 * 22 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1514 1.2310 0.4012 5 6 1.5562 2.3300 -0.5156 6 7 0.3086 2.2929 -0.9336 7 14 2.5280 3.9221 -0.6161 8 1 3.3208 3.9396 -1.8716 9 1 1.5921 5.0748 -0.6055 10 1 3.4438 4.0173 0.5490 11 6 2.1975 -1.2687 -0.0006 12 6 2.4487 -1.7032 -1.4215 13 6 1.5288 -2.5058 -2.0707 14 6 1.7541 -2.9008 -3.3752 15 6 2.9099 -2.5011 -4.0300 16 8 3.1369 -2.8936 -5.3111 17 6 2.1423 -3.7171 -5.9232 18 9 0.9223 -3.0329 -5.9501 19 9 2.5325 -4.0256 -7.2308 20 9 1.9983 -4.8987 -5.1879 21 6 3.8341 -1.7003 -3.3745 22 6 3.6011 -1.3027 -2.0723 23 1 -0.3634 0.0991 -1.0229 24 1 -0.3634 -0.9355 0.4255 25 1 -0.3634 0.8362 0.5972 26 1 -0.1061 3.0925 -1.2935 27 1 3.1498 -1.1387 0.5133 28 1 1.6084 -2.0286 0.5129 29 1 0.6315 -2.8210 -1.5588 30 1 1.0333 -3.5244 -3.8832 31 1 4.7349 -1.3882 -3.8819 32 1 4.3203 -0.6797 -1.5614 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044316945.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:24 Heat of formation + Delta-G solvation = -158.783531 kcal Electronic energy + Delta-G solvation = -21355.714792 eV Core-core repulsion = 17480.832724 eV Total energy + Delta-G solvation = -3874.882069 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.087 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -51.48463 -49.20299 -49.07450 -41.20513 -39.06290 -37.05810 -33.60751 -32.03715 -31.41136 -28.01998 -27.72978 -26.40550 -23.89293 -23.64890 -22.13318 -20.65423 -20.19740 -20.01227 -18.73302 -17.72516 -17.10221 -16.54397 -16.25770 -16.19952 -15.84863 -15.56247 -15.49175 -15.40793 -15.35579 -15.17276 -15.03569 -14.93786 -14.35550 -14.19954 -13.96780 -13.17192 -12.98848 -12.73330 -12.55499 -12.45508 -12.18195 -11.98295 -11.93017 -11.68958 -10.59676 -9.97315 -9.37318 -8.75402 -7.82152 -5.29254 0.28891 0.38432 0.46508 1.48081 1.49349 1.56639 1.78724 2.50010 2.68718 2.75279 2.97768 3.36313 3.69717 3.78219 3.92143 4.16562 4.18275 4.46971 4.49134 4.73117 4.89491 5.01135 5.09073 5.11687 5.29523 5.43913 5.49686 5.67022 5.79792 5.81449 6.03279 6.36720 7.18742 7.88451 8.32990 9.21286 Molecular weight = 275.09amu Principal moments of inertia in cm(-1) A = 0.025326 B = 0.004807 C = 0.004605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.300767 B = 5823.973380 C = 6078.330585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.181 3.819 2 N -0.611 5.611 3 C -0.255 4.255 4 H 0.078 0.922 5 C -0.049 4.049 6 N -0.938 5.938 7 Si 0.962 3.038 8 H -0.286 1.286 9 H -0.298 1.298 10 H -0.266 1.266 11 C 0.181 3.819 12 C -0.108 4.108 13 C -0.083 4.083 14 C -0.193 4.193 15 C 0.073 3.927 16 O -0.318 6.318 17 C 0.607 3.393 18 F -0.169 7.169 19 F -0.129 7.129 20 F -0.163 7.163 21 C -0.127 4.127 22 C -0.077 4.077 23 H -0.004 1.004 24 H 0.026 0.974 25 H 0.025 0.975 26 H 0.246 0.754 27 H 0.065 0.935 28 H 0.070 0.930 29 H 0.135 0.865 30 H 0.137 0.863 31 H 0.151 0.849 32 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.831 -13.274 -6.891 15.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.333 5.333 3 C -0.385 4.385 4 H 0.095 0.905 5 C -0.244 4.244 6 N -0.585 5.585 7 Si 0.790 3.210 8 H -0.213 1.213 9 H -0.225 1.225 10 H -0.190 1.190 11 C 0.055 3.945 12 C -0.112 4.112 13 C -0.102 4.102 14 C -0.212 4.212 15 C 0.031 3.969 16 O -0.238 6.238 17 C 0.517 3.483 18 F -0.151 7.151 19 F -0.110 7.110 20 F -0.145 7.145 21 C -0.146 4.146 22 C -0.096 4.096 23 H 0.014 0.986 24 H 0.045 0.955 25 H 0.043 0.957 26 H 0.055 0.945 27 H 0.084 0.916 28 H 0.088 0.912 29 H 0.153 0.847 30 H 0.155 0.845 31 H 0.169 0.831 32 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 4.835 -13.113 -7.025 15.642 hybrid contribution -0.207 0.963 -0.581 1.144 sum 4.628 -12.150 -7.606 15.064 Atomic orbital electron populations 1.20600 0.82598 0.95879 0.97339 1.44235 1.02131 1.01373 1.85571 1.19541 0.99586 0.86979 1.32427 0.90459 1.25889 0.97346 1.01953 0.99204 1.70269 1.12680 1.28285 1.47284 0.85358 0.77960 0.79410 0.78229 1.21322 1.22520 1.19045 1.20089 0.97050 0.87204 0.90143 1.21218 0.93953 0.95198 1.00799 1.20965 0.98964 0.96634 0.93586 1.21521 0.97237 1.05126 0.97302 1.18725 0.97138 1.00063 0.80930 1.86342 1.44141 1.65000 1.28316 1.19262 0.75975 0.76404 0.76678 1.93307 1.45701 1.79922 1.96210 1.93299 1.91200 1.92358 1.34184 1.93293 1.95252 1.48682 1.77301 1.20585 0.99952 0.99213 0.94829 1.21051 0.97624 0.97502 0.93408 0.98563 0.95513 0.95661 0.94490 0.91624 0.91174 0.84687 0.84494 0.83142 0.84345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.78 8.99 127.77 1.15 9.93 16 2 N -0.61 -29.24 2.91 -731.31 -2.13 -31.37 16 3 C -0.26 -13.35 9.67 84.03 0.81 -12.54 16 4 H 0.08 3.84 7.83 -2.91 -0.02 3.82 16 5 C -0.05 -2.69 5.38 84.86 0.46 -2.23 16 6 N -0.94 -54.98 10.13 21.65 0.22 -54.76 16 7 Si 0.96 44.18 29.56 68.60 2.03 46.21 16 8 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 9 H -0.30 -13.98 7.11 99.48 0.71 -13.28 16 10 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 11 C 0.18 6.75 5.83 85.63 0.50 7.25 16 12 C -0.11 -3.87 5.46 -19.85 -0.11 -3.98 16 13 C -0.08 -2.74 9.69 22.25 0.22 -2.53 16 14 C -0.19 -6.04 8.26 22.36 0.18 -5.86 16 15 C 0.07 2.30 6.48 22.51 0.15 2.44 16 16 O -0.32 -9.01 10.37 -92.39 -0.96 -9.97 16 17 C 0.61 14.94 3.42 113.37 0.39 15.33 16 18 F -0.17 -4.46 15.56 44.97 0.70 -3.76 16 19 F -0.13 -2.85 17.53 44.97 0.79 -2.06 16 20 F -0.16 -3.82 15.56 44.97 0.70 -3.12 16 21 C -0.13 -3.94 9.99 22.37 0.22 -3.72 16 22 C -0.08 -2.60 9.69 22.25 0.22 -2.38 16 23 H 0.00 -0.22 7.43 -2.38 -0.02 -0.24 16 24 H 0.03 1.08 7.83 -2.38 -0.02 1.07 16 25 H 0.02 1.34 7.04 -2.39 -0.02 1.32 16 26 H 0.25 14.14 8.31 -92.71 -0.77 13.37 16 27 H 0.07 2.30 7.98 -2.39 -0.02 2.28 16 28 H 0.07 2.29 7.80 -2.39 -0.02 2.27 16 29 H 0.14 4.06 8.06 -2.91 -0.02 4.04 16 30 H 0.14 3.81 5.10 -2.91 -0.01 3.80 16 31 H 0.15 3.88 8.06 -2.91 -0.02 3.86 16 32 H 0.14 4.40 8.06 -2.91 -0.02 4.38 16 Total: -1.00 -60.22 289.31 6.68 -53.54 By element: Atomic # 1 Polarization: 2.43 SS G_CDS: 1.15 Total: 3.58 kcal Atomic # 6 Polarization: -2.46 SS G_CDS: 4.18 Total: 1.72 kcal Atomic # 7 Polarization: -84.22 SS G_CDS: -1.91 Total: -86.13 kcal Atomic # 8 Polarization: -9.01 SS G_CDS: -0.96 Total: -9.97 kcal Atomic # 9 Polarization: -11.13 SS G_CDS: 2.19 Total: -8.95 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Total: -60.22 6.68 -53.54 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044316945.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.239 kcal (2) G-P(sol) polarization free energy of solvation -60.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds