Wall clock time and date at job start Mon Mar 30 2020 01:39:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31441 * 1 3 3 Si 1.86807 * 119.99936 * 2 1 4 4 H 1.48500 * 109.47097 * 269.99838 * 3 2 1 5 5 H 1.48502 * 109.47034 * 29.99884 * 3 2 1 6 6 H 1.48499 * 109.46871 * 149.99560 * 3 2 1 7 7 C 1.38752 * 119.99882 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00187 * 0.02562 * 7 2 1 9 9 O 1.34919 * 119.99770 * 180.02562 * 7 2 1 10 10 C 1.34315 * 116.99862 * 179.97438 * 9 7 2 11 11 O 1.21212 * 119.99755 * 359.97438 * 10 9 7 12 12 C 1.50703 * 120.00015 * 180.02562 * 10 9 7 13 13 H 1.08997 * 110.85765 * 303.79089 * 12 10 9 14 14 C 1.54635 * 110.96714 * 67.62177 * 12 10 9 15 15 C 1.51289 * 104.25460 * 142.70240 * 14 12 10 16 16 O 1.21284 * 124.94465 * 164.00869 * 15 14 12 17 17 N 1.34422 * 110.11145 * 344.14003 * 15 14 12 18 18 C 1.39926 * 124.34804 * 179.43870 * 17 15 14 19 19 C 1.38870 * 120.06978 * 173.92537 * 18 17 15 20 20 C 1.38114 * 119.93036 * 179.72451 * 19 18 17 21 21 C 1.38288 * 120.06818 * 0.28025 * 20 19 18 22 22 C 1.38282 * 120.13938 * 359.97438 * 21 20 19 23 23 C 1.38109 * 120.07346 * 0.02562 * 22 21 20 24 24 C 1.46765 * 111.30229 * 359.17492 * 17 15 14 25 25 H 0.97002 * 119.99847 * 0.02562 * 1 2 3 26 26 H 1.09003 * 110.48562 * 261.59032 * 14 12 10 27 27 H 1.08994 * 110.48758 * 24.10789 * 14 12 10 28 28 H 1.08000 * 120.03570 * 0.02562 * 19 18 17 29 29 H 1.07996 * 119.96639 * 180.26095 * 20 19 18 30 30 H 1.07994 * 119.92480 * 179.97438 * 21 20 19 31 31 H 1.08003 * 119.96037 * 179.97438 * 22 21 20 32 32 H 1.08000 * 120.03526 * 180.02562 * 23 22 21 33 33 H 1.09004 * 110.24292 * 136.27985 * 24 17 15 34 34 H 1.08995 * 110.24579 * 258.19023 * 24 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2484 1.6178 0.0000 4 1 2.4960 2.0465 -1.4001 5 1 1.4458 2.6527 0.7000 6 1 3.5459 1.4402 0.7001 7 6 2.0081 -1.2016 0.0005 8 1 1.4682 -2.1369 0.0005 9 8 3.3573 -1.2016 0.0011 10 6 3.9671 -2.3984 0.0021 11 8 3.3069 -3.4149 0.0030 12 6 5.4721 -2.4772 0.0033 13 1 5.8899 -1.9323 -0.8431 14 6 6.0524 -1.9566 1.3387 15 6 7.2286 -2.8674 1.6141 16 8 8.1142 -2.6370 2.4101 17 7 7.1508 -3.9678 0.8460 18 6 8.0920 -5.0032 0.8524 19 6 7.8612 -6.1579 0.1162 20 6 8.7948 -7.1757 0.1200 21 6 9.9557 -7.0483 0.8606 22 6 10.1860 -5.9019 1.5989 23 6 9.2564 -4.8805 1.5992 24 6 5.9486 -3.9467 0.0044 25 1 -0.4850 0.8401 -0.0004 26 1 6.3830 -0.9232 1.2339 27 1 5.3126 -2.0407 2.1347 28 1 6.9549 -6.2578 -0.4626 29 1 8.6179 -8.0721 -0.4556 30 1 10.6839 -7.8457 0.8622 31 1 11.0935 -5.8056 2.1765 32 1 9.4371 -3.9853 2.1757 33 1 6.1922 -4.2650 -1.0093 34 1 5.1803 -4.5935 0.4279 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000047812682.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:06 Heat of formation + Delta-G solvation = -94.588205 kcal Electronic energy + Delta-G solvation = -20463.608450 eV Core-core repulsion = 17133.366840 eV Total energy + Delta-G solvation = -3330.241610 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.099 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.44907 -41.07686 -39.53155 -38.09279 -37.14033 -34.59239 -34.27725 -31.88729 -30.36567 -29.00311 -27.85609 -25.15402 -24.08296 -22.91576 -21.29829 -20.86552 -20.15646 -19.10966 -18.72177 -17.73066 -17.36017 -16.72526 -16.50999 -16.39314 -15.98753 -15.57260 -15.13767 -14.84929 -14.68844 -14.65883 -14.34248 -14.29684 -14.02478 -13.58288 -13.26050 -12.86052 -12.64204 -12.57672 -12.37112 -12.20564 -12.09751 -11.85236 -11.32091 -11.22706 -10.83421 -10.79749 -9.91711 -8.99078 -8.54221 -6.41688 0.22598 0.43531 1.23471 1.37255 1.38785 1.48440 1.56570 1.60037 2.19898 2.29788 2.88064 2.91084 3.02138 3.21435 3.59024 3.86416 3.97433 4.05846 4.25334 4.33500 4.36180 4.41013 4.51968 4.53554 4.61187 4.70179 4.76919 5.09848 5.19084 5.41641 5.48130 5.54696 5.61792 5.87759 5.91255 6.09012 6.49776 6.79368 6.81805 7.53783 8.58159 Molecular weight = 275.10amu Principal moments of inertia in cm(-1) A = 0.038422 B = 0.004015 C = 0.003717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.576667 B = 6972.655746 C = 7530.962791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.017 3.983 3 Si 0.979 3.021 4 H -0.259 1.259 5 H -0.272 1.272 6 H -0.243 1.243 7 C -0.407 4.407 8 H 0.061 0.939 9 O -0.247 6.247 10 C 0.424 3.576 11 O -0.564 6.564 12 C -0.073 4.073 13 H 0.160 0.840 14 C -0.137 4.137 15 C 0.521 3.479 16 O -0.537 6.537 17 N -0.556 5.556 18 C 0.143 3.857 19 C -0.164 4.164 20 C -0.092 4.092 21 C -0.145 4.145 22 C -0.097 4.097 23 C -0.181 4.181 24 C 0.114 3.886 25 H 0.289 0.711 26 H 0.142 0.858 27 H 0.108 0.892 28 H 0.138 0.862 29 H 0.154 0.846 30 H 0.151 0.849 31 H 0.144 0.856 32 H 0.134 0.866 33 H 0.123 0.877 34 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.139 -8.326 -1.150 21.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.183 4.183 3 Si 0.799 3.201 4 H -0.184 1.184 5 H -0.196 1.196 6 H -0.166 1.166 7 C -0.482 4.482 8 H 0.079 0.921 9 O -0.156 6.156 10 C 0.271 3.729 11 O -0.460 6.460 12 C -0.092 4.092 13 H 0.177 0.823 14 C -0.177 4.177 15 C 0.311 3.689 16 O -0.415 6.415 17 N -0.279 5.279 18 C 0.050 3.950 19 C -0.184 4.184 20 C -0.110 4.110 21 C -0.164 4.164 22 C -0.116 4.116 23 C -0.201 4.201 24 C -0.007 4.007 25 H 0.099 0.901 26 H 0.160 0.840 27 H 0.126 0.874 28 H 0.156 0.844 29 H 0.172 0.828 30 H 0.169 0.831 31 H 0.161 0.839 32 H 0.152 0.848 33 H 0.141 0.859 34 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 20.207 -8.336 -0.730 21.871 hybrid contribution -0.765 0.432 0.116 0.886 sum 19.443 -7.904 -0.614 20.997 Atomic orbital electron populations 1.69704 1.07711 1.30266 1.47894 1.25559 0.95899 1.02769 0.94078 0.85125 0.79342 0.75767 0.79890 1.18371 1.19650 1.16586 1.20307 0.77586 0.95792 1.54550 0.92132 1.83504 1.21985 1.32309 1.77805 1.23428 0.91550 0.81618 0.76331 1.90620 1.68018 1.37134 1.50221 1.21712 0.86932 0.98446 1.02119 0.82272 1.22362 0.95910 1.02065 0.97330 1.21162 0.86613 0.82140 0.78976 1.90601 1.38548 1.76181 1.36201 1.45893 1.23031 1.18904 1.40033 1.18085 0.89409 0.88529 0.98985 1.21102 1.02144 0.92802 1.02359 1.21345 0.93022 0.98483 0.98182 1.21509 0.98535 0.98489 0.97824 1.21324 0.98828 0.92915 0.98522 1.21637 0.94019 1.02275 1.02173 1.22199 0.85394 0.95603 0.97540 0.90099 0.84000 0.87376 0.84396 0.82791 0.83092 0.83864 0.84834 0.85909 0.89481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.69 13.96 21.62 0.30 -53.39 16 2 C 0.02 0.96 5.49 84.87 0.47 1.43 16 3 Si 0.98 41.16 28.62 68.60 1.96 43.12 16 4 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 5 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 6 H -0.24 -9.51 7.11 99.48 0.71 -8.80 16 7 C -0.41 -23.56 10.10 67.94 0.69 -22.87 16 8 H 0.06 4.02 7.09 -2.91 -0.02 4.00 16 9 O -0.25 -11.93 8.58 14.85 0.13 -11.80 16 10 C 0.42 17.59 7.13 71.24 0.51 18.10 16 11 O -0.56 -27.48 14.74 20.77 0.31 -27.17 16 12 C -0.07 -1.99 3.66 -10.48 -0.04 -2.03 16 13 H 0.16 3.26 8.14 -2.39 -0.02 3.24 16 14 C -0.14 -3.62 6.41 30.59 0.20 -3.42 16 15 C 0.52 15.17 7.92 87.90 0.70 15.86 16 16 O -0.54 -18.27 14.82 -3.04 -0.05 -18.32 16 17 N -0.56 -14.78 3.14 -627.68 -1.97 -16.75 16 18 C 0.14 3.67 6.60 38.15 0.25 3.93 16 19 C -0.16 -3.40 9.41 22.39 0.21 -3.19 16 20 C -0.09 -1.52 10.04 22.25 0.22 -1.30 16 21 C -0.14 -2.32 10.04 22.29 0.22 -2.10 16 22 C -0.10 -1.92 10.04 22.25 0.22 -1.69 16 23 C -0.18 -4.69 9.28 22.39 0.21 -4.48 16 24 C 0.11 2.84 5.62 86.83 0.49 3.33 16 25 H 0.29 15.31 8.31 -92.71 -0.77 14.54 16 26 H 0.14 3.13 8.14 -2.39 -0.02 3.11 16 27 H 0.11 3.11 7.89 -2.39 -0.02 3.09 16 28 H 0.14 2.49 7.01 -2.91 -0.02 2.47 16 29 H 0.15 1.62 8.06 -2.91 -0.02 1.60 16 30 H 0.15 1.49 8.06 -2.91 -0.02 1.46 16 31 H 0.14 2.14 8.06 -2.91 -0.02 2.12 16 32 H 0.13 3.99 5.26 -2.91 -0.02 3.98 16 33 H 0.12 2.35 7.70 -2.39 -0.02 2.33 16 34 H 0.09 2.51 6.96 -2.39 -0.02 2.49 16 Total: -1.00 -73.06 297.61 6.16 -66.90 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: 1.13 Total: 15.83 kcal Atomic # 6 Polarization: -2.78 SS G_CDS: 4.34 Total: 1.57 kcal Atomic # 7 Polarization: -68.46 SS G_CDS: -1.67 Total: -70.13 kcal Atomic # 8 Polarization: -57.68 SS G_CDS: 0.39 Total: -57.29 kcal Atomic # 14 Polarization: 41.16 SS G_CDS: 1.96 Total: 43.12 kcal Total: -73.06 6.16 -66.90 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000047812682.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.684 kcal (2) G-P(sol) polarization free energy of solvation -73.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds