Wall clock time and date at job start Mon Mar 30 2020 01:47:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 120.00111 * 2 1 4 4 H 1.48499 * 109.47104 * 270.00228 * 3 2 1 5 5 H 1.48500 * 109.46876 * 30.00451 * 3 2 1 6 6 H 1.48506 * 109.46930 * 150.00366 * 3 2 1 7 7 C 1.37873 * 119.99909 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00177 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00217 * 359.97438 * 7 2 1 10 10 S 1.81399 * 109.47410 * 180.02562 * 9 7 2 11 11 O 1.42098 * 108.57930 * 294.48552 * 10 9 7 12 12 O 1.42100 * 108.57478 * 65.51668 * 10 9 7 13 13 C 1.81404 * 101.91985 * 179.97438 * 10 9 7 14 14 C 1.50703 * 109.46895 * 179.97438 * 13 10 9 15 15 O 1.21287 * 119.99969 * 0.02562 * 14 13 10 16 16 N 1.34780 * 119.99930 * 179.97438 * 14 13 10 17 17 C 1.46923 * 120.62645 * 359.72225 * 16 14 13 18 18 C 1.53635 * 108.53994 * 126.36857 * 17 16 14 19 19 C 1.53042 * 109.23848 * 54.85307 * 18 17 16 20 20 C 1.53040 * 109.54172 * 298.51116 * 19 18 17 21 21 C 1.46926 * 120.63021 * 180.02562 * 16 14 13 22 22 H 0.97002 * 119.99804 * 359.97438 * 1 2 3 23 23 H 1.09004 * 109.46923 * 60.00061 * 9 7 2 24 24 H 1.09004 * 109.46818 * 300.00611 * 9 7 2 25 25 H 1.08997 * 109.47476 * 300.00325 * 13 10 9 26 26 H 1.08995 * 109.46830 * 60.00457 * 13 10 9 27 27 H 1.09000 * 109.58851 * 246.19925 * 17 16 14 28 28 H 1.08999 * 109.59088 * 6.62905 * 17 16 14 29 29 H 1.08997 * 109.63385 * 294.86265 * 18 17 16 30 30 H 1.08993 * 109.45840 * 174.73871 * 18 17 16 31 31 H 1.09002 * 109.45568 * 178.49267 * 19 18 17 32 32 H 1.08998 * 109.46021 * 58.53576 * 19 18 17 33 33 H 1.08998 * 109.49358 * 301.41885 * 20 19 18 34 34 H 1.08996 * 109.49639 * 181.32113 * 20 19 18 35 35 H 1.09000 * 109.58686 * 353.37189 * 21 16 14 36 36 H 1.09001 * 109.58523 * 113.79797 * 21 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 16 2.4298 -3.8780 -0.0005 11 8 3.1483 -3.8593 -1.2263 12 8 3.1482 -3.8593 1.2253 13 6 1.3241 -5.3161 0.0003 14 6 2.1444 -6.5803 -0.0003 15 8 3.3557 -6.5173 -0.0007 16 7 1.5321 -7.7810 0.0007 17 6 0.0658 -7.8734 0.0084 18 6 -0.3738 -8.7638 -1.1639 19 6 0.3413 -10.1135 -1.0677 20 6 1.8535 -9.8998 -1.1663 21 6 2.3182 -9.0223 0.0007 22 1 -0.4850 0.8401 0.0004 23 1 0.6240 -2.5567 -0.8903 24 1 0.6246 -2.5570 0.8897 25 1 0.6956 -5.2908 0.8904 26 1 0.6951 -5.2913 -0.8895 27 1 -0.2678 -8.3117 0.9489 28 1 -0.3637 -6.8781 -0.1059 29 1 -0.1158 -8.2818 -2.1068 30 1 -1.4516 -8.9190 -1.1177 31 1 0.0117 -10.7579 -1.8827 32 1 0.1024 -10.5838 -0.1139 33 1 2.0905 -9.4070 -2.1091 34 1 2.3607 -10.8634 -1.1212 35 1 3.3754 -8.7852 -0.1186 36 1 2.1642 -9.5522 0.9407 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058256783.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:26 Heat of formation + Delta-G solvation = -117.191179 kcal Electronic energy + Delta-G solvation = -19722.337770 eV Core-core repulsion = 16526.559973 eV Total energy + Delta-G solvation = -3195.777797 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 275.102 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.25031 -37.54100 -35.92547 -34.94313 -33.36676 -33.23741 -31.66748 -29.83749 -28.98076 -25.45085 -23.64370 -23.34058 -21.29888 -19.31737 -17.93463 -17.46119 -16.94291 -16.06115 -15.95386 -15.45338 -14.95202 -14.85398 -14.71112 -14.34429 -14.08104 -14.03778 -13.37949 -13.24414 -12.62544 -12.48351 -12.33725 -12.13344 -11.57689 -11.37727 -11.27077 -11.03495 -11.01839 -10.98258 -10.87975 -10.86069 -10.60376 -10.27978 -10.04704 -9.77742 -9.08742 -8.83406 -8.70457 -6.33416 -4.42290 0.88104 2.51139 2.81429 3.23891 3.28958 3.36397 3.79188 4.16410 4.28772 4.45169 4.55332 4.60489 4.68226 4.79135 4.93180 5.00458 5.03765 5.16623 5.23276 5.36590 5.44916 5.47564 5.52134 5.56270 5.64582 5.75344 5.80918 6.02576 6.32287 6.62248 6.66180 7.14639 7.49634 7.74647 7.99152 8.59869 9.24880 10.78595 Molecular weight = 275.10amu Principal moments of inertia in cm(-1) A = 0.040011 B = 0.004303 C = 0.004047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.647295 B = 6505.805526 C = 6916.462305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.075 3.925 3 Si 0.906 3.094 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.266 1.266 7 C -0.528 4.528 8 H 0.074 0.926 9 C -0.406 4.406 10 S 2.423 3.577 11 O -0.942 6.942 12 O -0.942 6.942 13 C -0.675 4.675 14 C 0.547 3.453 15 O -0.527 6.527 16 N -0.609 5.609 17 C 0.101 3.899 18 C -0.138 4.138 19 C -0.120 4.120 20 C -0.136 4.136 21 C 0.108 3.892 22 H 0.268 0.732 23 H 0.085 0.915 24 H 0.086 0.914 25 H 0.154 0.846 26 H 0.153 0.847 27 H 0.072 0.928 28 H 0.092 0.908 29 H 0.070 0.930 30 H 0.077 0.923 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.068 0.932 34 H 0.075 0.925 35 H 0.096 0.904 36 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.341 -18.472 -0.981 19.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.131 4.131 3 Si 0.732 3.268 4 H -0.199 1.199 5 H -0.207 1.207 6 H -0.190 1.190 7 C -0.567 4.567 8 H 0.092 0.908 9 C -0.541 4.541 10 S 2.603 3.397 11 O -0.939 6.939 12 O -0.939 6.939 13 C -0.798 4.798 14 C 0.334 3.666 15 O -0.404 6.404 16 N -0.344 5.344 17 C -0.022 4.022 18 C -0.176 4.176 19 C -0.158 4.158 20 C -0.174 4.174 21 C -0.014 4.014 22 H 0.078 0.922 23 H 0.103 0.897 24 H 0.104 0.896 25 H 0.172 0.828 26 H 0.171 0.829 27 H 0.091 0.909 28 H 0.110 0.890 29 H 0.089 0.911 30 H 0.095 0.905 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.094 0.906 35 H 0.114 0.886 36 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.935 -18.434 -0.975 18.875 hybrid contribution -0.912 0.627 -0.019 1.107 sum -4.847 -17.808 -0.993 18.482 Atomic orbital electron populations 1.69945 1.06246 1.27716 1.48052 1.24927 0.95047 0.99593 0.93520 0.86336 0.80076 0.81583 0.78783 1.19886 1.20660 1.18981 1.20376 0.93100 0.88320 1.54931 0.90841 1.27614 1.09963 1.09863 1.06664 1.08524 0.78847 0.77022 0.75335 1.93464 1.69060 1.85437 1.45978 1.93465 1.69068 1.85432 1.45963 1.31162 1.19403 1.16862 1.12353 1.19453 0.87568 0.83999 0.75587 1.90833 1.13573 1.86548 1.49400 1.47968 1.07127 1.05475 1.73802 1.21942 0.79489 1.01800 0.98925 1.22022 1.00462 0.96123 0.98990 1.21523 0.95101 0.96957 1.02186 1.21941 0.96295 0.99971 0.99217 1.21661 0.97484 0.84001 0.98266 0.92229 0.89652 0.89640 0.82843 0.82875 0.90933 0.88971 0.91144 0.90468 0.91610 0.91720 0.91276 0.90614 0.88598 0.91347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.60 13.29 55.43 0.74 -23.86 16 2 C 0.07 2.06 5.46 -17.82 -0.10 1.96 16 3 Si 0.91 21.11 29.54 -169.99 -5.02 16.09 16 4 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 5 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 6 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 7 C -0.53 -14.69 9.13 -34.44 -0.31 -15.00 16 8 H 0.07 2.05 7.71 -52.48 -0.40 1.65 16 9 C -0.41 -9.53 5.56 36.01 0.20 -9.33 16 10 S 2.42 52.89 3.88 -107.50 -0.42 52.47 16 11 O -0.94 -23.61 17.95 -59.53 -1.07 -24.68 16 12 O -0.94 -23.64 17.95 -59.52 -1.07 -24.71 16 13 C -0.68 -10.32 4.63 36.01 0.17 -10.15 16 14 C 0.55 9.29 7.72 -10.98 -0.08 9.20 16 15 O -0.53 -11.23 15.04 2.55 0.04 -11.20 16 16 N -0.61 -7.74 2.97 -172.47 -0.51 -8.25 16 17 C 0.10 0.91 6.37 -3.48 -0.02 0.89 16 18 C -0.14 -1.03 6.10 -26.38 -0.16 -1.19 16 19 C -0.12 -0.84 5.88 -26.69 -0.16 -1.00 16 20 C -0.14 -1.15 6.08 -26.59 -0.16 -1.31 16 21 C 0.11 1.18 6.43 -3.69 -0.02 1.16 16 22 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 23 H 0.09 1.91 8.14 -51.92 -0.42 1.49 16 24 H 0.09 1.91 8.14 -51.92 -0.42 1.49 16 25 H 0.15 1.81 7.93 -51.93 -0.41 1.39 16 26 H 0.15 1.81 7.70 -51.93 -0.40 1.41 16 27 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.09 0.76 5.93 -51.93 -0.31 0.45 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.10 1.23 7.01 -51.93 -0.36 0.87 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 311.30 15.07 4.69 4.69 Total: -1.00 -37.01 311.30 -8.53 -45.53 By element: Atomic # 1 Polarization: 3.93 SS G_CDS: -5.25 Total: -1.32 kcal Atomic # 6 Polarization: -24.11 SS G_CDS: -0.65 Total: -24.77 kcal Atomic # 7 Polarization: -32.34 SS G_CDS: 0.22 Total: -32.12 kcal Atomic # 8 Polarization: -58.48 SS G_CDS: -2.10 Total: -60.58 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Atomic # 16 Polarization: 52.89 SS G_CDS: -0.42 Total: 52.47 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -37.01 -8.53 -45.53 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058256783.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.657 kcal (2) G-P(sol) polarization free energy of solvation -37.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds