Wall clock time and date at job start Mon Mar 30 2020 02:39:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47371 * 2 1 4 4 N 1.46498 * 109.47416 * 181.36876 * 3 2 1 5 5 C 1.37103 * 120.00096 * 277.55617 * 4 3 2 6 6 H 1.07998 * 120.00180 * 139.32076 * 5 4 3 7 7 C 1.38950 * 119.99651 * 319.32093 * 5 4 3 8 8 N 1.31410 * 120.00174 * 161.03383 * 7 5 4 9 9 Si 1.86798 * 120.00078 * 341.03573 * 7 5 4 10 10 H 1.48507 * 109.47112 * 89.38734 * 9 7 5 11 11 H 1.48499 * 109.47202 * 209.38743 * 9 7 5 12 12 H 1.48495 * 109.47315 * 329.39176 * 9 7 5 13 13 C 1.34774 * 120.00286 * 97.54845 * 4 3 2 14 14 O 1.21290 * 120.00356 * 185.83638 * 13 4 3 15 15 C 1.50705 * 119.99673 * 5.84585 * 13 4 3 16 16 H 1.08993 * 110.01526 * 58.23703 * 15 13 4 17 17 C 1.53876 * 110.02523 * 296.80118 * 15 13 4 18 18 C 1.54161 * 108.70671 * 193.53070 * 17 15 13 19 19 S 1.82919 * 105.08512 * 27.91202 * 18 17 15 20 20 O 1.42105 * 109.35351 * 244.48070 * 19 18 17 21 21 O 1.42095 * 109.35398 * 111.27490 * 19 18 17 22 22 C 1.55055 * 110.02450 * 179.61774 * 15 13 4 23 23 H 1.09002 * 109.46878 * 304.80309 * 1 2 3 24 24 H 1.08997 * 109.47358 * 64.80708 * 1 2 3 25 25 H 1.09000 * 109.47441 * 184.80639 * 1 2 3 26 26 H 1.09004 * 109.46802 * 239.99752 * 2 1 3 27 27 H 1.09004 * 109.47381 * 120.00573 * 2 1 3 28 28 H 1.09004 * 109.47105 * 301.36940 * 3 2 1 29 29 H 1.09001 * 109.46858 * 61.36484 * 3 2 1 30 30 H 0.96993 * 120.00263 * 180.02562 * 8 7 5 31 31 H 1.09001 * 109.65016 * 313.38454 * 17 15 13 32 32 H 1.09008 * 109.64539 * 73.67951 * 17 15 13 33 33 H 1.09001 * 110.31839 * 269.00982 * 18 17 15 34 34 H 1.08999 * 110.40622 * 146.85882 * 18 17 15 35 35 H 1.09003 * 110.78687 * 279.98645 * 22 15 13 36 36 H 1.08998 * 110.79124 * 43.45484 * 22 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5046 1.4426 -0.0330 5 6 4.2165 1.2771 1.1270 6 1 5.1012 0.6578 1.1340 7 6 3.7996 1.9064 2.2936 8 7 4.2272 1.4781 3.4601 9 14 2.6313 3.3611 2.2039 10 1 1.2292 2.8733 2.2454 11 1 2.8756 4.2640 3.3573 12 1 2.8601 4.1025 0.9378 13 6 4.1524 1.6052 -1.2037 14 8 5.3599 1.4999 -1.2484 15 6 3.3763 1.9180 -2.4570 16 1 2.8051 2.8366 -2.3227 17 6 2.4302 0.7526 -2.7957 18 6 1.9118 0.9390 -4.2355 19 16 3.2278 1.8717 -5.0983 20 8 2.7280 3.1455 -5.4818 21 8 3.8452 1.0313 -6.0634 22 6 4.3452 2.0661 -3.6585 23 1 -0.3633 0.5866 0.8439 24 1 -0.3634 0.4374 -0.9299 25 1 -0.3634 -1.0240 0.0861 26 1 1.8933 -0.5139 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 1.6568 1.9633 -0.8775 29 1 1.6968 1.9491 0.9020 30 1 3.9359 1.9170 4.2744 31 1 2.9698 -0.1914 -2.7198 32 1 1.5899 0.7491 -2.1012 33 1 0.9831 1.5097 -4.2325 34 1 1.7590 -0.0290 -4.7127 35 1 4.8110 3.0516 -3.6606 36 1 5.1002 1.2800 -3.6458 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000060541853.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:22 Heat of formation + Delta-G solvation = -90.811197 kcal Electronic energy + Delta-G solvation = -20639.049894 eV Core-core repulsion = 17444.416019 eV Total energy + Delta-G solvation = -3194.633875 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 275.102 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -39.64374 -37.04380 -36.08869 -35.84231 -35.60390 -32.89037 -31.71052 -29.98999 -26.74342 -25.88649 -24.25846 -22.14514 -21.43126 -18.95998 -18.86011 -17.24627 -17.10698 -16.74608 -16.09671 -15.67291 -15.39345 -14.76137 -14.41337 -14.09687 -13.95240 -13.49470 -13.27828 -12.79891 -12.58632 -12.33368 -12.24949 -12.15152 -12.03594 -11.94199 -11.70904 -11.61906 -11.14139 -11.01899 -10.94657 -10.68734 -10.64295 -10.22885 -10.13365 -9.92329 -9.14652 -8.68003 -7.86135 -6.48138 -4.11271 0.03524 2.48396 2.91680 3.12650 3.15507 3.43942 3.55513 3.92253 4.04373 4.20922 4.32055 4.61037 4.69437 4.79589 4.84828 4.95762 5.23205 5.32260 5.36495 5.52166 5.54610 5.58017 5.62316 5.75785 5.87547 5.97508 6.01312 6.07783 6.19944 6.44690 6.73269 7.44832 8.17406 8.37093 8.82551 9.19129 9.59522 10.63498 Molecular weight = 275.10amu Principal moments of inertia in cm(-1) A = 0.024847 B = 0.006415 C = 0.005867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.629217 B = 4363.656773 C = 4771.493657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.144 4.144 3 C 0.078 3.922 4 N -0.462 5.462 5 C -0.317 4.317 6 H 0.106 0.894 7 C 0.064 3.936 8 N -0.863 5.863 9 Si 0.876 3.124 10 H -0.271 1.271 11 H -0.287 1.287 12 H -0.264 1.264 13 C 0.481 3.519 14 O -0.552 6.552 15 C -0.113 4.113 16 H 0.109 0.891 17 C -0.125 4.125 18 C -0.590 4.590 19 S 2.380 3.620 20 O -0.943 6.943 21 O -0.944 6.944 22 C -0.554 4.554 23 H 0.054 0.946 24 H 0.050 0.950 25 H 0.055 0.945 26 H 0.067 0.933 27 H 0.080 0.920 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.275 0.725 31 H 0.092 0.908 32 H 0.113 0.887 33 H 0.136 0.864 34 H 0.139 0.861 35 H 0.140 0.860 36 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.596 -0.803 -10.635 14.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.183 4.183 3 C -0.045 4.045 4 N -0.183 5.183 5 C -0.444 4.444 6 H 0.123 0.877 7 C -0.142 4.142 8 N -0.498 5.498 9 Si 0.704 3.296 10 H -0.198 1.198 11 H -0.213 1.213 12 H -0.189 1.189 13 C 0.267 3.733 14 O -0.433 6.433 15 C -0.137 4.137 16 H 0.127 0.873 17 C -0.164 4.164 18 C -0.719 4.719 19 S 2.565 3.435 20 O -0.940 6.940 21 O -0.941 6.941 22 C -0.685 4.685 23 H 0.073 0.927 24 H 0.069 0.931 25 H 0.074 0.926 26 H 0.086 0.914 27 H 0.098 0.902 28 H 0.086 0.914 29 H 0.089 0.911 30 H 0.085 0.915 31 H 0.110 0.890 32 H 0.131 0.869 33 H 0.155 0.845 34 H 0.157 0.843 35 H 0.158 0.842 36 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -8.879 -0.537 -11.393 14.454 hybrid contribution -0.832 0.584 1.058 1.468 sum -9.712 0.047 -10.335 14.182 Atomic orbital electron populations 1.21765 0.96123 1.01630 1.01452 1.22048 0.94865 0.97600 1.03768 1.22146 0.83297 0.97203 1.01867 1.43674 1.03698 1.64166 1.06791 1.19003 1.11802 1.29831 0.83804 0.87671 1.25363 0.97141 0.96811 0.94933 1.69711 1.43747 1.38822 0.97567 0.87038 0.80309 0.83672 0.78611 1.19823 1.21348 1.18879 1.19687 0.87735 0.81833 0.84012 1.90576 1.14044 1.53395 1.85258 1.22059 0.95763 1.00490 0.95342 0.87296 1.22500 1.00569 0.99598 0.93693 1.30480 1.17226 1.15235 1.08989 1.09280 0.79515 0.76377 0.78376 1.93604 1.79292 1.39431 1.81652 1.93597 1.74899 1.68332 1.57234 1.30473 1.12007 1.12889 1.13135 0.92674 0.93083 0.92625 0.91416 0.90162 0.91370 0.91102 0.91467 0.88951 0.86904 0.84531 0.84323 0.84201 0.83342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 9.86 37.16 0.37 -1.43 16 2 C -0.14 -2.19 5.24 -26.73 -0.14 -2.33 16 3 C 0.08 1.39 3.87 -4.04 -0.02 1.37 16 4 N -0.46 -10.19 2.15 -114.81 -0.25 -10.44 16 5 C -0.32 -8.46 9.30 -14.93 -0.14 -8.60 16 6 H 0.11 3.19 7.92 -52.49 -0.42 2.77 16 7 C 0.06 1.68 5.37 -17.47 -0.09 1.59 16 8 N -0.86 -24.00 13.96 55.50 0.77 -23.23 16 9 Si 0.88 19.55 25.20 -169.99 -4.28 15.27 16 10 H -0.27 -5.53 6.46 56.52 0.37 -5.17 16 11 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 12 H -0.26 -5.83 7.11 56.52 0.40 -5.43 16 13 C 0.48 10.10 7.02 -10.98 -0.08 10.02 16 14 O -0.55 -13.78 15.66 5.55 0.09 -13.69 16 15 C -0.11 -1.67 2.09 -90.23 -0.19 -1.86 16 16 H 0.11 1.40 7.59 -51.93 -0.39 1.00 16 17 C -0.13 -1.43 4.04 -25.67 -0.10 -1.54 16 18 C -0.59 -5.15 7.26 37.76 0.27 -4.88 16 19 S 2.38 27.62 6.11 -107.50 -0.66 26.97 16 20 O -0.94 -13.61 18.15 -57.71 -1.05 -14.66 16 21 O -0.94 -13.86 18.14 -57.71 -1.05 -14.91 16 22 C -0.55 -7.32 6.20 38.24 0.24 -7.08 16 23 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.05 0.50 7.87 -51.93 -0.41 0.09 16 25 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 26 H 0.07 0.92 5.79 -51.93 -0.30 0.62 16 27 H 0.08 1.43 8.14 -51.93 -0.42 1.00 16 28 H 0.07 0.97 5.00 -51.93 -0.26 0.71 16 29 H 0.07 1.37 2.94 -51.93 -0.15 1.22 16 30 H 0.27 7.10 8.31 -40.82 -0.34 6.77 16 31 H 0.09 1.05 7.82 -51.93 -0.41 0.65 16 32 H 0.11 1.20 3.62 -51.92 -0.19 1.01 16 33 H 0.14 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.14 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.14 1.73 8.14 -51.93 -0.42 1.31 16 36 H 0.15 2.04 7.63 -51.93 -0.40 1.65 16 LS Contribution 293.62 15.07 4.42 4.42 Total: -1.00 -34.93 293.62 -6.50 -41.43 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: -4.63 Total: 3.56 kcal Atomic # 6 Polarization: -14.85 SS G_CDS: 0.12 Total: -14.73 kcal Atomic # 7 Polarization: -34.20 SS G_CDS: 0.53 Total: -33.67 kcal Atomic # 8 Polarization: -41.25 SS G_CDS: -2.01 Total: -43.26 kcal Atomic # 14 Polarization: 19.55 SS G_CDS: -4.28 Total: 15.27 kcal Atomic # 16 Polarization: 27.62 SS G_CDS: -0.66 Total: 26.97 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -34.93 -6.50 -41.43 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060541853.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.381 kcal (2) G-P(sol) polarization free energy of solvation -34.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds