Wall clock time and date at job start Mon Mar 30 2020 02:39:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47371 * 2 1 4 4 N 1.46498 * 109.47416 * 181.36876 * 3 2 1 5 5 C 1.37103 * 120.00096 * 277.55617 * 4 3 2 6 6 H 1.07998 * 120.00180 * 139.32076 * 5 4 3 7 7 C 1.38950 * 119.99651 * 319.32093 * 5 4 3 8 8 N 1.31410 * 120.00174 * 161.03383 * 7 5 4 9 9 Si 1.86798 * 120.00078 * 341.03573 * 7 5 4 10 10 H 1.48507 * 109.47112 * 89.38734 * 9 7 5 11 11 H 1.48499 * 109.47202 * 209.38743 * 9 7 5 12 12 H 1.48495 * 109.47315 * 329.39176 * 9 7 5 13 13 C 1.34774 * 120.00286 * 97.54845 * 4 3 2 14 14 O 1.21290 * 120.00356 * 185.83638 * 13 4 3 15 15 C 1.50705 * 119.99673 * 5.84585 * 13 4 3 16 16 H 1.08993 * 110.01526 * 58.23703 * 15 13 4 17 17 C 1.53876 * 110.02523 * 296.80118 * 15 13 4 18 18 C 1.54161 * 108.70671 * 193.53070 * 17 15 13 19 19 S 1.82919 * 105.08512 * 27.91202 * 18 17 15 20 20 O 1.42105 * 109.35351 * 244.48070 * 19 18 17 21 21 O 1.42095 * 109.35398 * 111.27490 * 19 18 17 22 22 C 1.55055 * 110.02450 * 179.61774 * 15 13 4 23 23 H 1.09002 * 109.46878 * 304.80309 * 1 2 3 24 24 H 1.08997 * 109.47358 * 64.80708 * 1 2 3 25 25 H 1.09000 * 109.47441 * 184.80639 * 1 2 3 26 26 H 1.09004 * 109.46802 * 239.99752 * 2 1 3 27 27 H 1.09004 * 109.47381 * 120.00573 * 2 1 3 28 28 H 1.09004 * 109.47105 * 301.36940 * 3 2 1 29 29 H 1.09001 * 109.46858 * 61.36484 * 3 2 1 30 30 H 0.96993 * 120.00263 * 180.02562 * 8 7 5 31 31 H 1.09001 * 109.65016 * 313.38454 * 17 15 13 32 32 H 1.09008 * 109.64539 * 73.67951 * 17 15 13 33 33 H 1.09001 * 110.31839 * 269.00982 * 18 17 15 34 34 H 1.08999 * 110.40622 * 146.85882 * 18 17 15 35 35 H 1.09003 * 110.78687 * 279.98645 * 22 15 13 36 36 H 1.08998 * 110.79124 * 43.45484 * 22 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5046 1.4426 -0.0330 5 6 4.2165 1.2771 1.1270 6 1 5.1012 0.6578 1.1340 7 6 3.7996 1.9064 2.2936 8 7 4.2272 1.4781 3.4601 9 14 2.6313 3.3611 2.2039 10 1 1.2292 2.8733 2.2454 11 1 2.8756 4.2640 3.3573 12 1 2.8601 4.1025 0.9378 13 6 4.1524 1.6052 -1.2037 14 8 5.3599 1.4999 -1.2484 15 6 3.3763 1.9180 -2.4570 16 1 2.8051 2.8366 -2.3227 17 6 2.4302 0.7526 -2.7957 18 6 1.9118 0.9390 -4.2355 19 16 3.2278 1.8717 -5.0983 20 8 2.7280 3.1455 -5.4818 21 8 3.8452 1.0313 -6.0634 22 6 4.3452 2.0661 -3.6585 23 1 -0.3633 0.5866 0.8439 24 1 -0.3634 0.4374 -0.9299 25 1 -0.3634 -1.0240 0.0861 26 1 1.8933 -0.5139 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 1.6568 1.9633 -0.8775 29 1 1.6968 1.9491 0.9020 30 1 3.9359 1.9170 4.2744 31 1 2.9698 -0.1914 -2.7198 32 1 1.5899 0.7491 -2.1012 33 1 0.9831 1.5097 -4.2325 34 1 1.7590 -0.0290 -4.7127 35 1 4.8110 3.0516 -3.6606 36 1 5.1002 1.2800 -3.6458 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000060541853.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:21 Heat of formation + Delta-G solvation = -118.991877 kcal Electronic energy + Delta-G solvation = -20640.271900 eV Core-core repulsion = 17444.416019 eV Total energy + Delta-G solvation = -3195.855881 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 275.102 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.17751 -38.07982 -37.45413 -37.15110 -36.79203 -34.53954 -33.36039 -30.94744 -28.25638 -27.15969 -25.68799 -23.33800 -22.62904 -20.50303 -19.81039 -18.91722 -18.48458 -17.84318 -17.65681 -16.70981 -16.64222 -16.08848 -15.76444 -15.55128 -15.03010 -14.83170 -14.57710 -14.31703 -14.12101 -13.53770 -13.34452 -13.23566 -13.16409 -13.11136 -13.03014 -12.76717 -12.50739 -12.28424 -12.09751 -11.97936 -11.88220 -11.74523 -11.43264 -11.17101 -10.94671 -10.40085 -9.69177 -8.50746 -6.18568 -0.88952 1.16425 1.30950 1.41810 1.56966 1.85539 2.16406 2.57727 2.65058 2.91125 3.11163 3.28979 3.65115 3.67104 3.85024 3.97018 4.04269 4.16089 4.20199 4.42601 4.54370 4.65608 4.67017 4.72934 4.86846 4.97074 5.02350 5.04256 5.23659 5.37395 5.51778 5.61773 6.04711 6.54825 6.92229 7.27745 7.81530 8.66177 Molecular weight = 275.10amu Principal moments of inertia in cm(-1) A = 0.024847 B = 0.006415 C = 0.005867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.629217 B = 4363.656773 C = 4771.493657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.142 4.142 3 C 0.068 3.932 4 N -0.473 5.473 5 C -0.330 4.330 6 H 0.041 0.959 7 C 0.014 3.986 8 N -0.914 5.914 9 Si 0.943 3.057 10 H -0.230 1.230 11 H -0.293 1.293 12 H -0.255 1.255 13 C 0.474 3.526 14 O -0.608 6.608 15 C -0.112 4.112 16 H 0.139 0.861 17 C -0.129 4.129 18 C -0.554 4.554 19 S 2.406 3.594 20 O -0.967 6.967 21 O -0.976 6.976 22 C -0.570 4.570 23 H 0.048 0.952 24 H 0.086 0.914 25 H 0.067 0.933 26 H 0.084 0.916 27 H 0.039 0.961 28 H 0.116 0.884 29 H 0.058 0.942 30 H 0.279 0.721 31 H 0.089 0.911 32 H 0.131 0.869 33 H 0.176 0.824 34 H 0.170 0.830 35 H 0.139 0.861 36 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.030 -0.038 -12.797 18.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.180 4.180 3 C -0.054 4.054 4 N -0.194 5.194 5 C -0.458 4.458 6 H 0.059 0.941 7 C -0.188 4.188 8 N -0.551 5.551 9 Si 0.766 3.234 10 H -0.155 1.155 11 H -0.220 1.220 12 H -0.179 1.179 13 C 0.263 3.737 14 O -0.491 6.491 15 C -0.134 4.134 16 H 0.157 0.843 17 C -0.167 4.167 18 C -0.686 4.686 19 S 2.593 3.407 20 O -0.964 6.964 21 O -0.974 6.974 22 C -0.699 4.699 23 H 0.068 0.932 24 H 0.105 0.895 25 H 0.086 0.914 26 H 0.102 0.898 27 H 0.058 0.942 28 H 0.134 0.866 29 H 0.076 0.924 30 H 0.088 0.912 31 H 0.108 0.892 32 H 0.149 0.851 33 H 0.194 0.806 34 H 0.188 0.812 35 H 0.157 0.843 36 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -13.313 0.230 -13.576 19.016 hybrid contribution 0.654 0.239 1.720 1.856 sum -12.659 0.469 -11.855 17.350 Atomic orbital electron populations 1.21758 0.92686 1.02869 1.03119 1.22027 0.97716 0.95622 1.02677 1.22492 0.80169 0.99337 1.03353 1.43797 1.05619 1.64432 1.05597 1.18571 1.11028 1.29771 0.86447 0.94068 1.26154 0.99448 0.99330 0.93910 1.69846 1.46248 1.40506 0.98531 0.85973 0.79927 0.78989 0.78494 1.15533 1.22038 1.17916 1.20776 0.87664 0.79710 0.85595 1.90545 1.16950 1.55172 1.86472 1.22105 0.96227 1.03196 0.91906 0.84304 1.22546 1.00281 0.97909 0.95947 1.30324 1.16162 1.16551 1.05593 1.08485 0.79367 0.75715 0.77173 1.93570 1.79415 1.41418 1.82038 1.93555 1.76406 1.68828 1.58579 1.30585 1.12562 1.12515 1.14211 0.93242 0.89531 0.91364 0.89807 0.94244 0.86615 0.92423 0.91167 0.89204 0.85079 0.80606 0.81175 0.84291 0.84900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.75 9.86 71.98 0.71 -2.04 16 2 C -0.14 -3.95 5.24 30.59 0.16 -3.79 16 3 C 0.07 2.22 3.87 86.38 0.33 2.55 16 4 N -0.47 -20.96 2.15 -635.54 -1.36 -22.33 16 5 C -0.33 -18.63 9.30 84.04 0.78 -17.84 16 6 H 0.04 2.77 7.92 -2.91 -0.02 2.75 16 7 C 0.01 0.74 5.37 84.93 0.46 1.20 16 8 N -0.91 -53.49 13.96 21.66 0.30 -53.19 16 9 Si 0.94 39.85 25.20 68.60 1.73 41.58 16 10 H -0.23 -8.25 6.46 99.48 0.64 -7.60 16 11 H -0.29 -12.62 7.11 99.48 0.71 -11.91 16 12 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 13 C 0.47 20.02 7.02 87.66 0.62 20.63 16 14 O -0.61 -32.01 15.66 -3.06 -0.05 -32.06 16 15 C -0.11 -2.99 2.09 -10.54 -0.02 -3.01 16 16 H 0.14 2.90 7.59 -2.39 -0.02 2.88 16 17 C -0.13 -2.32 4.04 31.28 0.13 -2.19 16 18 C -0.55 -6.13 7.26 72.38 0.53 -5.60 16 19 S 2.41 48.48 6.11 -56.49 -0.34 48.13 16 20 O -0.97 -24.80 18.15 -127.49 -2.31 -27.11 16 21 O -0.98 -26.76 18.14 -127.49 -2.31 -29.07 16 22 C -0.57 -14.49 6.20 72.69 0.45 -14.04 16 23 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 24 H 0.09 1.05 7.87 -2.39 -0.02 1.03 16 25 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 26 H 0.08 2.02 5.79 -2.38 -0.01 2.01 16 27 H 0.04 1.40 8.14 -2.38 -0.02 1.38 16 28 H 0.12 2.62 5.00 -2.38 -0.01 2.61 16 29 H 0.06 2.04 2.94 -2.39 -0.01 2.03 16 30 H 0.28 15.01 8.31 -92.71 -0.77 14.24 16 31 H 0.09 1.73 7.82 -2.39 -0.02 1.72 16 32 H 0.13 1.93 3.62 -2.38 -0.01 1.93 16 33 H 0.18 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.17 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.14 3.43 8.14 -2.39 -0.02 3.41 16 36 H 0.13 3.78 7.63 -2.39 -0.02 3.77 16 Total: -1.00 -84.39 293.62 0.82 -83.58 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: 1.03 Total: 14.60 kcal Atomic # 6 Polarization: -28.27 SS G_CDS: 4.14 Total: -24.13 kcal Atomic # 7 Polarization: -74.46 SS G_CDS: -1.06 Total: -75.52 kcal Atomic # 8 Polarization: -83.57 SS G_CDS: -4.67 Total: -88.24 kcal Atomic # 14 Polarization: 39.85 SS G_CDS: 1.73 Total: 41.58 kcal Atomic # 16 Polarization: 48.48 SS G_CDS: -0.34 Total: 48.13 kcal Total: -84.39 0.82 -83.58 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060541853.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.416 kcal (2) G-P(sol) polarization free energy of solvation -84.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds