Wall clock time and date at job start Mon Mar 30 2020 01:49:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86804 * 119.99881 * 2 1 4 4 H 1.48497 * 109.46827 * 269.99988 * 3 2 1 5 5 H 1.48501 * 109.47281 * 29.99990 * 3 2 1 6 6 H 1.48503 * 109.47136 * 150.00291 * 3 2 1 7 7 C 1.37877 * 120.00181 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00177 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99580 * 0.02562 * 7 2 1 10 10 N 1.46501 * 109.46876 * 179.97438 * 9 7 2 11 11 C 1.46504 * 119.99988 * 263.21143 * 10 9 7 12 12 C 1.50710 * 109.46872 * 269.99515 * 11 10 9 13 13 C 1.34509 * 125.78423 * 89.71283 * 12 11 10 14 14 C 1.41385 * 106.83744 * 179.89222 * 13 12 11 15 15 C 1.34510 * 106.83988 * 0.37264 * 14 13 12 16 16 O 1.34299 * 125.78885 * 270.03026 * 12 11 10 17 17 C 1.34779 * 119.99906 * 83.20380 * 10 9 7 18 18 O 1.21699 * 119.99684 * 183.84133 * 17 10 9 19 19 C 1.46655 * 120.00040 * 3.84699 * 17 10 9 20 20 C 1.36540 * 125.98522 * 173.43745 * 19 17 10 21 21 C 1.40372 * 106.70654 * 180.02562 * 20 19 17 22 22 C 1.35137 * 107.11140 * 0.02562 * 21 20 19 23 23 O 1.33923 * 108.76731 * 359.97438 * 22 21 20 24 24 H 0.96996 * 120.00032 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.47278 * 59.99763 * 9 7 2 26 26 H 1.08994 * 109.47405 * 299.99642 * 9 7 2 27 27 H 1.08995 * 109.47459 * 29.99290 * 11 10 9 28 28 H 1.09003 * 109.47211 * 150.00263 * 11 10 9 29 29 H 1.08003 * 126.58700 * 0.03011 * 13 12 11 30 30 H 1.08000 * 126.57948 * 180.17257 * 14 13 12 31 31 H 1.08001 * 125.79138 * 179.74550 * 15 14 13 32 32 H 1.07993 * 126.65377 * 0.02562 * 20 19 17 33 33 H 1.07993 * 126.44450 * 180.02562 * 21 20 19 34 34 H 1.07995 * 125.61129 * 180.26244 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5468 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2031 -3.6126 0.0005 11 6 2.5651 -4.2668 -1.2593 12 6 1.6168 -5.4081 -1.5233 13 6 0.4561 -5.3263 -2.1981 14 6 -0.1039 -6.6245 -2.2085 15 6 0.7440 -7.4201 -1.5323 16 8 1.7845 -6.6779 -1.1195 17 6 2.7459 -4.0351 1.1596 18 8 3.5888 -4.9129 1.1523 19 6 2.3208 -3.4370 2.4294 20 6 2.6918 -3.8527 3.6759 21 6 2.0541 -3.0011 4.5917 22 6 1.3305 -2.1146 3.8729 23 8 1.4940 -2.3803 2.5705 24 1 -0.4850 0.8400 0.0004 25 1 0.6247 -2.5570 -0.8896 26 1 0.6241 -2.5567 0.8902 27 1 2.5017 -3.5460 -2.0744 28 1 3.5835 -4.6492 -1.1907 29 1 0.0341 -4.4397 -2.6479 30 1 -1.0355 -6.9198 -2.6681 31 1 0.6106 -8.4765 -1.3515 32 1 3.3485 -4.6769 3.9118 33 1 2.1278 -3.0460 5.6681 34 1 0.7244 -1.3196 4.2813 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000060625770.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:04 Heat of formation + Delta-G solvation = -10.046623 kcal Electronic energy + Delta-G solvation = -21294.730581 eV Core-core repulsion = 17968.154969 eV Total energy + Delta-G solvation = -3326.575612 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.099 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.53550 -43.41731 -40.49730 -37.09602 -34.68984 -33.93434 -33.79322 -32.19465 -30.46912 -29.17710 -27.08397 -25.16801 -23.47603 -22.65407 -22.49798 -21.54304 -20.64592 -18.91872 -18.52403 -18.07971 -17.58731 -17.30159 -16.98355 -16.51432 -16.29745 -15.94104 -15.25629 -14.70741 -14.33336 -14.06772 -13.99168 -13.86797 -13.71657 -13.57789 -13.46341 -13.06759 -12.98103 -12.64560 -12.46715 -12.13042 -11.77246 -11.33310 -10.87323 -10.84441 -10.54795 -9.85827 -9.51020 -9.39653 -8.16396 -6.28095 0.19543 0.70562 1.40916 1.43397 1.51988 1.54151 1.64460 1.99050 2.04860 2.30270 2.40786 2.52129 3.15203 3.64380 3.82486 4.08045 4.10043 4.14779 4.19236 4.34895 4.50899 4.73909 4.77262 4.90589 4.94312 5.00035 5.02190 5.17798 5.32794 5.51714 5.61189 5.65204 5.74506 6.07159 6.12222 6.22548 6.37822 6.79309 7.05195 7.40642 8.90625 Molecular weight = 275.10amu Principal moments of inertia in cm(-1) A = 0.014552 B = 0.007491 C = 0.005643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1923.680465 B = 3737.148331 C = 4960.849883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.032 3.968 3 Si 0.950 3.050 4 H -0.274 1.274 5 H -0.278 1.278 6 H -0.277 1.277 7 C -0.534 4.534 8 H 0.045 0.955 9 C 0.253 3.747 10 N -0.587 5.587 11 C 0.194 3.806 12 C -0.049 4.049 13 C -0.202 4.202 14 C -0.223 4.223 15 C -0.042 4.042 16 O -0.192 6.192 17 C 0.592 3.408 18 O -0.570 6.570 19 C -0.101 4.101 20 C -0.137 4.137 21 C -0.225 4.225 22 C -0.020 4.020 23 O -0.139 6.139 24 H 0.267 0.733 25 H 0.028 0.972 26 H 0.039 0.961 27 H 0.124 0.876 28 H 0.091 0.909 29 H 0.151 0.849 30 H 0.175 0.825 31 H 0.241 0.759 32 H 0.163 0.837 33 H 0.189 0.811 34 H 0.232 0.768 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.807 -7.936 2.294 8.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.169 4.169 3 Si 0.776 3.224 4 H -0.200 1.200 5 H -0.203 1.203 6 H -0.202 1.202 7 C -0.573 4.573 8 H 0.064 0.936 9 C 0.133 3.867 10 N -0.316 5.316 11 C 0.071 3.929 12 C -0.099 4.099 13 C -0.222 4.222 14 C -0.242 4.242 15 C -0.109 4.109 16 O -0.088 6.088 17 C 0.382 3.618 18 O -0.453 6.453 19 C -0.154 4.154 20 C -0.158 4.158 21 C -0.244 4.244 22 C -0.091 4.091 23 O -0.032 6.032 24 H 0.076 0.924 25 H 0.046 0.954 26 H 0.056 0.944 27 H 0.142 0.858 28 H 0.109 0.891 29 H 0.169 0.831 30 H 0.192 0.808 31 H 0.257 0.743 32 H 0.181 0.819 33 H 0.206 0.794 34 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -0.426 -8.182 2.144 8.469 hybrid contribution 0.108 1.026 -0.073 1.034 sum -0.318 -7.156 2.071 7.456 Atomic orbital electron populations 1.70010 1.06944 1.27915 1.50492 1.25463 0.95457 1.01606 0.94386 0.85679 0.78559 0.79756 0.78382 1.19971 1.20278 1.20249 1.21447 0.92715 0.91351 1.51774 0.93629 1.19331 0.87384 0.82212 0.97777 1.48257 1.44336 1.33472 1.05486 1.19828 0.96368 0.89542 0.87144 1.22967 1.00168 0.84191 1.02620 1.21923 0.95585 1.00011 1.04680 1.22159 1.03390 0.92521 1.06109 1.24913 0.86650 0.99095 1.00260 1.84075 1.43253 1.19413 1.62086 1.17028 0.80878 0.81175 0.82719 1.90736 1.34199 1.33430 1.86981 1.21987 1.02835 0.94565 0.95986 1.22143 1.01540 1.01847 0.90256 1.22084 1.02425 0.97787 1.02067 1.25310 1.01645 1.01619 0.80492 1.84706 1.50885 1.39798 1.27807 0.92402 0.95431 0.94376 0.85796 0.89093 0.83123 0.80751 0.74319 0.81934 0.79388 0.75189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.68 13.29 21.45 0.28 -49.40 16 2 C 0.03 1.65 5.46 84.65 0.46 2.11 16 3 Si 0.95 41.87 29.54 68.60 2.03 43.89 16 4 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 5 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 6 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 7 C -0.53 -28.23 8.39 25.60 0.21 -28.01 16 8 H 0.05 2.49 7.81 -2.91 -0.02 2.47 16 9 C 0.25 12.54 4.77 85.63 0.41 12.95 16 10 N -0.59 -26.60 2.46 -835.23 -2.05 -28.65 16 11 C 0.19 7.54 5.93 85.64 0.51 8.05 16 12 C -0.05 -1.79 6.90 24.83 0.17 -1.62 16 13 C -0.20 -6.72 10.81 22.19 0.24 -6.48 16 14 C -0.22 -6.06 10.91 22.19 0.24 -5.82 16 15 C -0.04 -1.12 12.09 66.97 0.81 -0.31 16 16 O -0.19 -6.90 10.65 -2.47 -0.03 -6.93 16 17 C 0.59 27.62 7.57 86.44 0.65 28.28 16 18 O -0.57 -27.66 16.43 -4.34 -0.07 -27.73 16 19 C -0.10 -4.39 6.74 24.07 0.16 -4.23 16 20 C -0.14 -4.88 10.63 22.39 0.24 -4.65 16 21 C -0.23 -6.52 10.88 22.07 0.24 -6.28 16 22 C -0.02 -0.65 12.08 67.11 0.81 0.16 16 23 O -0.14 -6.03 6.59 -4.94 -0.03 -6.06 16 24 H 0.27 13.71 8.31 -92.71 -0.77 12.94 16 25 H 0.03 1.42 8.02 -2.39 -0.02 1.40 16 26 H 0.04 2.04 5.43 -2.39 -0.01 2.03 16 27 H 0.12 4.42 8.07 -2.39 -0.02 4.40 16 28 H 0.09 3.51 7.37 -2.39 -0.02 3.50 16 29 H 0.15 4.84 8.06 -2.91 -0.02 4.81 16 30 H 0.18 3.55 8.06 -2.91 -0.02 3.53 16 31 H 0.24 3.89 8.06 -2.91 -0.02 3.87 16 32 H 0.16 5.24 8.06 -2.91 -0.02 5.21 16 33 H 0.19 3.75 8.06 -2.91 -0.02 3.73 16 34 H 0.23 5.59 8.06 -2.91 -0.02 5.57 16 Total: -1.00 -67.46 306.78 6.41 -61.06 By element: Atomic # 1 Polarization: 18.55 SS G_CDS: 1.12 Total: 19.67 kcal Atomic # 6 Polarization: -11.01 SS G_CDS: 5.16 Total: -5.84 kcal Atomic # 7 Polarization: -76.28 SS G_CDS: -1.77 Total: -78.05 kcal Atomic # 8 Polarization: -40.59 SS G_CDS: -0.13 Total: -40.72 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 2.03 Total: 43.89 kcal Total: -67.46 6.41 -61.06 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060625770.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.011 kcal (2) G-P(sol) polarization free energy of solvation -67.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds