Wall clock time and date at job start Mon Mar 30 2020 01:53:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86807 * 119.99862 * 2 1 4 4 H 1.48498 * 109.47097 * 270.00212 * 3 2 1 5 5 H 1.48499 * 109.46600 * 30.00212 * 3 2 1 6 6 H 1.48495 * 109.46786 * 150.00267 * 3 2 1 7 7 C 1.38808 * 120.00284 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00190 * 200.71217 * 7 2 1 9 9 N 1.36935 * 120.00179 * 20.70937 * 7 2 1 10 10 C 1.46500 * 120.00013 * 37.82654 * 9 7 2 11 11 N 1.46505 * 109.46707 * 90.00196 * 10 9 7 12 12 C 1.34945 * 126.03668 * 95.00598 * 11 10 9 13 13 C 1.35309 * 107.74749 * 180.20154 * 12 11 10 14 14 C 1.39874 * 107.92120 * 359.63887 * 13 12 11 15 15 C 1.50703 * 125.90101 * 180.13823 * 14 13 12 16 16 F 1.39899 * 109.46756 * 185.23638 * 15 14 13 17 17 F 1.39893 * 109.47270 * 305.23617 * 15 14 13 18 18 F 1.39896 * 109.46720 * 65.23677 * 15 14 13 19 19 N 1.30837 * 108.19771 * 0.36301 * 14 13 12 20 20 C 1.46504 * 120.00067 * 217.83241 * 9 7 2 21 21 C 1.52995 * 117.50001 * 14.22379 * 20 9 7 22 22 C 1.52994 * 117.49938 * 305.56280 * 20 9 7 23 23 H 0.97001 * 120.00506 * 354.95191 * 1 2 3 24 24 H 1.08999 * 109.47408 * 330.00394 * 10 9 7 25 25 H 1.09000 * 109.47257 * 210.00038 * 10 9 7 26 26 H 1.08007 * 126.12562 * 359.93813 * 12 11 10 27 27 H 1.08006 * 126.04472 * 179.76641 * 13 12 11 28 28 H 1.09002 * 115.54889 * 159.89402 * 20 9 7 29 29 H 1.09000 * 117.49800 * 359.97438 * 21 20 9 30 30 H 1.09003 * 117.49907 * 145.02410 * 21 20 9 31 31 H 1.08998 * 117.50118 * 214.98346 * 22 20 9 32 32 H 1.09008 * 117.50116 * 359.97438 * 22 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6526 0.7001 6 1 3.5476 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0379 -1.2324 0.3302 9 7 1.3920 -2.3495 -0.4204 10 6 0.4597 -2.3081 -1.5497 11 7 1.1931 -2.5383 -2.7970 12 6 1.3420 -3.7244 -3.4231 13 6 2.0856 -3.5139 -4.5338 14 6 2.3949 -2.1511 -4.5928 15 6 3.2056 -1.4747 -5.6682 16 9 3.4041 -0.1324 -5.3277 17 9 4.4445 -2.1132 -5.7893 18 9 2.5208 -1.5507 -6.8857 19 7 1.8629 -1.5658 -3.5506 20 6 1.6628 -3.6185 0.2598 21 6 2.3675 -3.5566 1.6164 22 6 3.1235 -4.0564 0.3829 23 1 -0.4851 0.8368 0.0739 24 1 -0.0229 -1.3315 -1.5869 25 1 -0.2969 -3.0828 -1.4249 26 1 0.9431 -4.6726 -3.0940 27 1 2.3854 -4.2651 -5.2496 28 1 0.9141 -4.3977 0.1166 29 1 2.6300 -2.5717 2.0026 30 1 2.0828 -4.2953 2.3656 31 1 3.3360 -5.1237 0.3210 32 1 3.8832 -3.4005 -0.0426 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065187979.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:43 Heat of formation + Delta-G solvation = -20.786713 kcal Electronic energy + Delta-G solvation = -21719.270490 eV Core-core repulsion = 17882.665164 eV Total energy + Delta-G solvation = -3836.605326 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.094 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.78711 -47.34082 -47.26259 -40.63386 -37.28851 -34.04502 -32.25674 -30.35052 -29.50285 -27.01029 -24.98976 -23.42645 -21.58093 -20.77084 -20.53582 -20.03041 -18.19450 -17.89360 -17.50784 -16.86117 -15.96597 -15.29346 -14.74718 -14.30314 -14.14194 -14.10366 -13.98144 -13.73955 -13.45477 -13.44227 -13.29314 -13.00548 -12.82698 -12.14277 -11.82068 -11.36478 -11.17603 -10.98460 -10.78180 -10.75043 -10.27264 -10.17338 -9.94558 -9.65356 -9.07292 -8.70836 -8.19944 -7.00631 -6.20104 -3.74847 2.30764 2.67268 2.87291 3.26524 3.34968 3.39737 3.41869 4.16857 4.25810 4.42070 4.72322 4.77570 4.91109 5.11690 5.30529 5.45441 5.62725 5.84045 5.91383 5.94268 6.06071 6.27072 6.29426 6.35897 6.72094 6.74878 6.92845 6.97361 7.57029 7.65321 8.05057 8.21803 8.75406 9.38594 9.87845 10.86373 Molecular weight = 275.09amu Principal moments of inertia in cm(-1) A = 0.016315 B = 0.007349 C = 0.005937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1715.751847 B = 3808.907463 C = 4714.813669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.034 3.966 3 Si 0.908 3.092 4 H -0.275 1.275 5 H -0.288 1.288 6 H -0.275 1.275 7 C -0.275 4.275 8 H 0.067 0.933 9 N -0.525 5.525 10 C 0.344 3.656 11 N -0.325 5.325 12 C 0.049 3.951 13 C -0.251 4.251 14 C -0.054 4.054 15 C 0.555 3.445 16 F -0.170 7.170 17 F -0.175 7.175 18 F -0.176 7.176 19 N -0.217 5.217 20 C 0.110 3.890 21 C -0.184 4.184 22 C -0.219 4.219 23 H 0.265 0.735 24 H 0.137 0.863 25 H 0.077 0.923 26 H 0.171 0.829 27 H 0.143 0.857 28 H 0.094 0.906 29 H 0.102 0.898 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.615 -7.393 -6.264 9.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.169 4.169 3 Si 0.736 3.264 4 H -0.201 1.201 5 H -0.214 1.214 6 H -0.200 1.200 7 C -0.404 4.404 8 H 0.085 0.915 9 N -0.240 5.240 10 C 0.139 3.861 11 N -0.116 5.116 12 C -0.100 4.100 13 C -0.281 4.281 14 C -0.219 4.219 15 C 0.499 3.501 16 F -0.151 7.151 17 F -0.157 7.157 18 F -0.158 7.158 19 N -0.044 5.044 20 C 0.002 3.998 21 C -0.223 4.223 22 C -0.259 4.259 23 H 0.075 0.925 24 H 0.155 0.845 25 H 0.095 0.905 26 H 0.188 0.812 27 H 0.160 0.840 28 H 0.111 0.889 29 H 0.120 0.880 30 H 0.097 0.903 31 H 0.095 0.905 32 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 1.199 -6.067 -5.490 8.270 hybrid contribution 0.826 -0.006 -0.509 0.970 sum 2.025 -6.074 -5.998 8.773 Atomic orbital electron populations 1.69760 1.05831 1.27280 1.49783 1.25210 0.95181 0.99293 0.97212 0.86215 0.79308 0.82195 0.78635 1.20102 1.21386 1.20046 1.18921 0.94856 0.84439 1.42213 0.91533 1.43908 1.49657 1.03486 1.26899 1.22170 0.86976 1.05154 0.71828 1.52028 1.37047 1.03278 1.19222 1.22592 1.00487 0.92668 0.94226 1.20952 1.09860 0.94423 1.02880 1.21842 1.06780 0.95133 0.98131 1.17047 0.77097 0.76145 0.79814 1.93220 1.95157 1.34650 1.92119 1.93185 1.44290 1.81993 1.96194 1.93183 1.79777 1.96134 1.46704 1.77474 1.09048 1.15763 1.02124 1.21296 0.92240 0.89999 0.96265 1.23086 1.05553 1.02481 0.91157 1.23343 0.98930 0.99450 1.04222 0.92488 0.84548 0.90495 0.81177 0.83956 0.88857 0.87967 0.90282 0.90484 0.89579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.47 11.44 55.49 0.63 -22.83 16 2 C 0.03 0.87 4.97 -17.43 -0.09 0.79 16 3 Si 0.91 21.45 29.61 -169.99 -5.03 16.41 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.28 -7.04 8.04 -15.06 -0.12 -7.16 16 8 H 0.07 1.77 7.21 -52.49 -0.38 1.39 16 9 N -0.53 -11.89 3.02 -169.35 -0.51 -12.40 16 10 C 0.34 7.30 6.64 -63.74 -0.42 6.88 16 11 N -0.33 -6.60 3.85 -64.56 -0.25 -6.85 16 12 C 0.05 0.81 11.48 -17.23 -0.20 0.61 16 13 C -0.25 -4.16 10.73 -40.01 -0.43 -4.59 16 14 C -0.05 -1.04 6.51 -82.40 -0.54 -1.58 16 15 C 0.56 9.75 3.51 36.01 0.13 9.88 16 16 F -0.17 -3.25 17.14 2.25 0.04 -3.21 16 17 F -0.18 -2.89 17.30 2.25 0.04 -2.85 16 18 F -0.18 -2.85 17.30 2.25 0.04 -2.81 16 19 N -0.22 -4.87 12.35 33.67 0.42 -4.46 16 20 C 0.11 2.11 6.61 -67.93 -0.45 1.66 16 21 C -0.18 -3.37 9.81 -26.70 -0.26 -3.63 16 22 C -0.22 -3.93 10.08 -26.70 -0.27 -4.20 16 23 H 0.27 6.82 8.32 -40.82 -0.34 6.48 16 24 H 0.14 3.35 5.51 -51.93 -0.29 3.06 16 25 H 0.08 1.39 8.02 -51.93 -0.42 0.97 16 26 H 0.17 2.11 8.06 -52.48 -0.42 1.68 16 27 H 0.14 1.93 8.06 -52.48 -0.42 1.51 16 28 H 0.09 1.55 8.10 -51.93 -0.42 1.13 16 29 H 0.10 2.11 6.96 -51.93 -0.36 1.75 16 30 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 31 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 32 H 0.09 1.75 7.99 -51.92 -0.41 1.33 16 LS Contribution 296.23 15.07 4.46 4.46 Total: -1.00 -27.75 296.23 -5.92 -33.67 By element: Atomic # 1 Polarization: 5.32 SS G_CDS: -3.10 Total: 2.22 kcal Atomic # 6 Polarization: 1.30 SS G_CDS: -2.65 Total: -1.35 kcal Atomic # 7 Polarization: -46.83 SS G_CDS: 0.29 Total: -46.54 kcal Atomic # 9 Polarization: -8.99 SS G_CDS: 0.12 Total: -8.87 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.03 Total: 16.41 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -27.75 -5.92 -33.67 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065187979.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.879 kcal (2) G-P(sol) polarization free energy of solvation -27.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds