Wall clock time and date at job start Mon Mar 30 2020 01:53:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86807 * 119.99862 * 2 1 4 4 H 1.48498 * 109.47097 * 270.00212 * 3 2 1 5 5 H 1.48499 * 109.46600 * 30.00212 * 3 2 1 6 6 H 1.48495 * 109.46786 * 150.00267 * 3 2 1 7 7 C 1.38808 * 120.00284 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00190 * 200.71217 * 7 2 1 9 9 N 1.36935 * 120.00179 * 20.70937 * 7 2 1 10 10 C 1.46500 * 120.00013 * 37.82654 * 9 7 2 11 11 N 1.46505 * 109.46707 * 90.00196 * 10 9 7 12 12 C 1.34945 * 126.03668 * 95.00598 * 11 10 9 13 13 C 1.35309 * 107.74749 * 180.20154 * 12 11 10 14 14 C 1.39874 * 107.92120 * 359.63887 * 13 12 11 15 15 C 1.50703 * 125.90101 * 180.13823 * 14 13 12 16 16 F 1.39899 * 109.46756 * 185.23638 * 15 14 13 17 17 F 1.39893 * 109.47270 * 305.23617 * 15 14 13 18 18 F 1.39896 * 109.46720 * 65.23677 * 15 14 13 19 19 N 1.30837 * 108.19771 * 0.36301 * 14 13 12 20 20 C 1.46504 * 120.00067 * 217.83241 * 9 7 2 21 21 C 1.52995 * 117.50001 * 14.22379 * 20 9 7 22 22 C 1.52994 * 117.49938 * 305.56280 * 20 9 7 23 23 H 0.97001 * 120.00506 * 354.95191 * 1 2 3 24 24 H 1.08999 * 109.47408 * 330.00394 * 10 9 7 25 25 H 1.09000 * 109.47257 * 210.00038 * 10 9 7 26 26 H 1.08007 * 126.12562 * 359.93813 * 12 11 10 27 27 H 1.08006 * 126.04472 * 179.76641 * 13 12 11 28 28 H 1.09002 * 115.54889 * 159.89402 * 20 9 7 29 29 H 1.09000 * 117.49800 * 359.97438 * 21 20 9 30 30 H 1.09003 * 117.49907 * 145.02410 * 21 20 9 31 31 H 1.08998 * 117.50118 * 214.98346 * 22 20 9 32 32 H 1.09008 * 117.50116 * 359.97438 * 22 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6526 0.7001 6 1 3.5476 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0379 -1.2324 0.3302 9 7 1.3920 -2.3495 -0.4204 10 6 0.4597 -2.3081 -1.5497 11 7 1.1931 -2.5383 -2.7970 12 6 1.3420 -3.7244 -3.4231 13 6 2.0856 -3.5139 -4.5338 14 6 2.3949 -2.1511 -4.5928 15 6 3.2056 -1.4747 -5.6682 16 9 3.4041 -0.1324 -5.3277 17 9 4.4445 -2.1132 -5.7893 18 9 2.5208 -1.5507 -6.8857 19 7 1.8629 -1.5658 -3.5506 20 6 1.6628 -3.6185 0.2598 21 6 2.3675 -3.5566 1.6164 22 6 3.1235 -4.0564 0.3829 23 1 -0.4851 0.8368 0.0739 24 1 -0.0229 -1.3315 -1.5869 25 1 -0.2969 -3.0828 -1.4249 26 1 0.9431 -4.6726 -3.0940 27 1 2.3854 -4.2651 -5.2496 28 1 0.9141 -4.3977 0.1166 29 1 2.6300 -2.5717 2.0026 30 1 2.0828 -4.2953 2.3656 31 1 3.3360 -5.1237 0.3210 32 1 3.8832 -3.4005 -0.0426 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000065187979.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:43 Heat of formation + Delta-G solvation = -35.660905 kcal Electronic energy + Delta-G solvation = -21719.915484 eV Core-core repulsion = 17882.665164 eV Total energy + Delta-G solvation = -3837.250320 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.094 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -51.18278 -48.70368 -48.69075 -42.07564 -38.85166 -35.66667 -33.96117 -32.00034 -30.93750 -28.59231 -26.71272 -24.98347 -23.00969 -22.17821 -22.02146 -21.61423 -19.57586 -19.32117 -18.97620 -18.50505 -17.61217 -16.80772 -16.55279 -15.85704 -15.67197 -15.55449 -15.42088 -15.12716 -14.85371 -14.84714 -14.64645 -14.52231 -14.30806 -13.71782 -13.28573 -13.15948 -12.95197 -12.83567 -12.48899 -12.24517 -12.05007 -11.73289 -11.56456 -11.08925 -10.63223 -10.54382 -9.60595 -8.76487 -8.13057 -5.68506 0.84736 1.22910 1.34896 1.43143 1.45260 1.56493 1.97189 2.34766 2.78060 3.01012 3.06535 3.31128 3.39462 3.40053 3.95023 4.10047 4.23846 4.39146 4.43774 4.61228 4.72938 4.91328 4.93749 4.99481 5.12095 5.27138 5.46800 5.50463 5.55922 6.16435 6.35612 6.68307 6.91337 7.56443 8.02082 8.89899 Molecular weight = 275.09amu Principal moments of inertia in cm(-1) A = 0.016315 B = 0.007349 C = 0.005937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1715.751847 B = 3808.907463 C = 4714.813669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C -0.004 4.004 3 Si 0.945 3.055 4 H -0.293 1.293 5 H -0.281 1.281 6 H -0.273 1.273 7 C -0.270 4.270 8 H 0.046 0.954 9 N -0.544 5.544 10 C 0.351 3.649 11 N -0.340 5.340 12 C 0.063 3.937 13 C -0.248 4.248 14 C -0.061 4.061 15 C 0.560 3.440 16 F -0.184 7.184 17 F -0.167 7.167 18 F -0.166 7.166 19 N -0.283 5.283 20 C 0.097 3.903 21 C -0.185 4.185 22 C -0.205 4.205 23 H 0.261 0.739 24 H 0.099 0.901 25 H 0.114 0.886 26 H 0.219 0.781 27 H 0.178 0.822 28 H 0.130 0.870 29 H 0.068 0.932 30 H 0.112 0.888 31 H 0.112 0.888 32 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.480 -10.216 -6.746 12.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.204 4.204 3 Si 0.773 3.227 4 H -0.220 1.220 5 H -0.207 1.207 6 H -0.198 1.198 7 C -0.400 4.400 8 H 0.063 0.937 9 N -0.259 5.259 10 C 0.146 3.854 11 N -0.130 5.130 12 C -0.084 4.084 13 C -0.278 4.278 14 C -0.226 4.226 15 C 0.504 3.496 16 F -0.165 7.165 17 F -0.149 7.149 18 F -0.148 7.148 19 N -0.110 5.110 20 C -0.010 4.010 21 C -0.224 4.224 22 C -0.245 4.245 23 H 0.071 0.929 24 H 0.116 0.884 25 H 0.132 0.868 26 H 0.236 0.764 27 H 0.195 0.805 28 H 0.148 0.852 29 H 0.087 0.913 30 H 0.130 0.870 31 H 0.131 0.869 32 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.080 -8.899 -5.978 10.775 hybrid contribution 0.922 0.765 -0.464 1.285 sum 2.003 -8.134 -6.443 10.568 Atomic orbital electron populations 1.69830 1.06190 1.27127 1.51421 1.25587 0.95718 1.00839 0.98254 0.85645 0.78859 0.80794 0.77392 1.22026 1.20664 1.19830 1.18806 0.93991 0.86007 1.41166 0.93667 1.43987 1.49871 1.03846 1.28238 1.21872 0.87071 1.04620 0.71886 1.51564 1.37648 1.04362 1.19378 1.23364 0.99061 0.92794 0.93221 1.21408 1.09172 0.93711 1.03534 1.22235 1.06165 0.96601 0.97604 1.16927 0.77285 0.75522 0.79898 1.93193 1.95245 1.35745 1.92308 1.93197 1.43768 1.81733 1.96158 1.93201 1.79601 1.96035 1.45944 1.77407 1.11571 1.17861 1.04127 1.21646 0.93669 0.89324 0.96356 1.23084 1.05658 1.01800 0.91846 1.23269 0.97291 1.00678 1.03263 0.92929 0.88355 0.86836 0.76439 0.80481 0.85228 0.91305 0.87021 0.86937 0.92835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -48.95 11.44 21.65 0.25 -48.70 16 2 C 0.00 -0.22 4.97 84.86 0.42 0.20 16 3 Si 0.94 45.37 29.61 68.60 2.03 47.40 16 4 H -0.29 -14.79 7.11 99.48 0.71 -14.09 16 5 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 6 H -0.27 -12.84 7.11 99.48 0.71 -12.14 16 7 C -0.27 -14.07 8.04 84.03 0.68 -13.39 16 8 H 0.05 2.50 7.21 -2.91 -0.02 2.48 16 9 N -0.54 -24.22 3.02 -689.70 -2.09 -26.30 16 10 C 0.35 14.53 6.64 170.96 1.14 15.67 16 11 N -0.34 -13.29 3.85 -358.17 -1.38 -14.66 16 12 C 0.06 1.85 11.48 83.54 0.96 2.81 16 13 C -0.25 -7.41 10.73 21.99 0.24 -7.17 16 14 C -0.06 -2.28 6.51 43.10 0.28 -2.00 16 15 C 0.56 19.13 3.51 71.24 0.25 19.38 16 16 F -0.18 -7.07 17.14 44.97 0.77 -6.30 16 17 F -0.17 -5.26 17.30 44.97 0.78 -4.49 16 18 F -0.17 -5.13 17.30 44.97 0.78 -4.35 16 19 N -0.28 -12.68 12.35 -47.38 -0.59 -13.26 16 20 C 0.10 3.47 6.61 44.99 0.30 3.76 16 21 C -0.19 -6.44 9.81 30.62 0.30 -6.14 16 22 C -0.20 -6.86 10.08 30.62 0.31 -6.55 16 23 H 0.26 13.81 8.32 -92.71 -0.77 13.04 16 24 H 0.10 4.90 5.51 -2.39 -0.01 4.89 16 25 H 0.11 3.76 8.02 -2.39 -0.02 3.75 16 26 H 0.22 4.06 8.06 -2.91 -0.02 4.04 16 27 H 0.18 3.95 8.06 -2.91 -0.02 3.93 16 28 H 0.13 3.68 8.10 -2.39 -0.02 3.66 16 29 H 0.07 2.86 6.96 -2.39 -0.02 2.85 16 30 H 0.11 3.12 8.14 -2.39 -0.02 3.10 16 31 H 0.11 2.97 8.14 -2.39 -0.02 2.95 16 32 H 0.05 2.14 7.99 -2.38 -0.02 2.12 16 Total: -1.00 -62.44 296.23 6.58 -55.86 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: 1.16 Total: 8.24 kcal Atomic # 6 Polarization: 1.70 SS G_CDS: 4.87 Total: 6.56 kcal Atomic # 7 Polarization: -99.13 SS G_CDS: -3.80 Total: -102.93 kcal Atomic # 9 Polarization: -17.46 SS G_CDS: 2.33 Total: -15.13 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal Total: -62.44 6.58 -55.86 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065187979.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.198 kcal (2) G-P(sol) polarization free energy of solvation -62.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds